Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47231 * 2 1 4 4 C 1.46500 * 120.00326 * 81.98168 * 3 2 1 5 5 C 1.52999 * 109.46967 * 65.26253 * 4 3 2 6 6 C 1.53010 * 109.47000 * 54.17422 * 5 4 3 7 7 C 1.53002 * 109.47251 * 174.17338 * 5 4 3 8 8 O 1.42904 * 109.47505 * 294.17826 * 5 4 3 9 9 S 1.65606 * 119.99957 * 262.26229 * 3 2 1 10 10 O 1.42100 * 106.39820 * 29.90701 * 9 3 2 11 11 O 1.42093 * 106.40271 * 162.82440 * 9 3 2 12 12 C 1.76204 * 107.21439 * 276.36808 * 9 3 2 13 13 C 1.38233 * 119.99544 * 263.15567 * 12 9 3 14 14 C 1.38237 * 119.99536 * 179.76891 * 13 12 9 15 15 C 1.38236 * 120.00048 * 0.50660 * 14 13 12 16 16 C 1.50701 * 119.99866 * 179.72206 * 15 14 13 17 17 C 1.50699 * 109.47408 * 270.02293 * 16 15 14 18 18 H 1.08000 * 120.00157 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00286 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00370 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99676 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47123 * 89.99943 * 21 19 17 23 23 H 1.48497 * 109.46796 * 209.99688 * 21 19 17 24 24 H 1.48496 * 109.46919 * 329.99647 * 21 19 17 25 25 C 1.38236 * 120.00165 * 359.74976 * 15 14 13 26 26 C 1.38232 * 120.00208 * 83.43567 * 12 9 3 27 27 H 1.08998 * 109.47400 * 300.00466 * 1 2 3 28 28 H 1.09003 * 109.47147 * 60.00330 * 1 2 3 29 29 H 1.09004 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47400 * 239.99534 * 2 1 3 31 31 H 1.09000 * 109.46646 * 119.99563 * 2 1 3 32 32 H 1.08999 * 109.47484 * 185.26064 * 4 3 2 33 33 H 1.09001 * 109.46967 * 305.26436 * 4 3 2 34 34 H 1.09005 * 109.46623 * 62.66445 * 6 5 4 35 35 H 1.09000 * 109.46681 * 182.66108 * 6 5 4 36 36 H 1.09000 * 109.47197 * 302.66376 * 6 5 4 37 37 H 1.08998 * 109.46856 * 60.00231 * 7 5 4 38 38 H 1.09000 * 109.47115 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.47292 * 300.00088 * 7 5 4 40 40 H 0.96697 * 113.99328 * 300.00168 * 8 5 4 41 41 H 1.08001 * 120.00208 * 0.02562 * 13 12 9 42 42 H 1.08008 * 119.99846 * 180.23132 * 14 13 12 43 43 H 1.08998 * 109.47309 * 30.02734 * 16 15 14 44 44 H 1.09004 * 109.46798 * 150.02357 * 16 15 14 45 45 H 0.96992 * 119.99952 * 180.02562 * 20 19 17 46 46 H 1.07997 * 120.00066 * 179.97438 * 25 15 14 47 47 H 1.08006 * 119.99631 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0957 2.1309 1.2563 5 6 3.1318 1.4805 2.1752 6 6 4.4655 1.3597 1.4351 7 6 3.3183 2.3435 3.4248 8 8 2.6798 0.1799 2.5577 9 16 2.4764 2.0975 -1.4211 10 8 1.6863 1.5042 -2.4423 11 8 2.5046 3.4966 -1.1744 12 6 4.1413 1.6139 -1.7359 13 6 5.1830 2.4485 -1.3766 14 6 6.4894 2.0670 -1.6192 15 6 6.7535 0.8556 -2.2306 16 6 8.1774 0.4426 -2.5007 17 6 8.5934 0.9347 -3.8630 18 1 7.8966 1.4913 -4.4721 19 6 9.8640 0.6753 -4.3313 20 7 10.2272 1.1052 -5.5200 21 14 11.0695 -0.2869 -3.2775 22 1 10.9345 -1.7367 -3.5693 23 1 12.4546 0.1527 -3.5833 24 1 10.7777 -0.0415 -1.8423 25 6 5.7115 0.0234 -2.5947 26 6 4.4054 0.4026 -2.3473 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 2.3896 3.1596 1.0481 33 1 1.1212 2.1231 1.7446 34 1 4.8336 2.3547 1.1850 35 1 5.1903 0.8538 2.0729 36 1 4.3225 0.7846 0.5203 37 1 2.3682 2.4296 3.9520 38 1 4.0561 1.8800 4.0797 39 1 3.6632 3.3356 3.1331 40 1 1.8374 0.1803 3.0325 41 1 4.9765 3.3967 -0.9026 42 1 7.3035 2.7174 -1.3351 43 1 8.8310 0.8746 -1.7430 44 1 8.2527 -0.6444 -2.4685 45 1 11.1209 0.9224 -5.8495 46 1 5.9178 -0.9228 -3.0727 47 1 3.5912 -0.2476 -2.6318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885078102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -129.536313 kcal Electronic energy + Delta-G solvation = -29179.790465 eV Core-core repulsion = 25260.412205 eV Total energy + Delta-G solvation = -3919.378260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33948 -39.83983 -38.44909 -37.01754 -36.53244 -35.56408 -33.64666 -33.41774 -31.98124 -30.94607 -29.74789 -28.19080 -26.89233 -25.26675 -23.83396 -23.56218 -22.30590 -21.22207 -20.12074 -19.03685 -18.97543 -18.58376 -17.67541 -17.06523 -16.75343 -16.45042 -16.03557 -15.88441 -15.82316 -15.34689 -15.27660 -14.79094 -14.63966 -14.48828 -14.19965 -13.86814 -13.65765 -13.63647 -13.51956 -13.43820 -13.22840 -13.14763 -13.08301 -12.92869 -12.71859 -12.60422 -12.55510 -12.46519 -12.33123 -12.07105 -11.95050 -11.83933 -11.77208 -11.71881 -11.52782 -10.90067 -10.83616 -9.95053 -9.91942 -9.72921 -8.34483 -6.41700 -0.67743 -0.07499 0.39721 1.35272 1.36855 1.48339 1.92014 2.31635 2.54507 2.75170 2.99950 3.21060 3.40828 3.71614 3.82663 3.87624 3.94543 4.07593 4.10693 4.15358 4.35576 4.45625 4.47116 4.49629 4.68024 4.72868 4.77850 4.78355 4.83185 4.85953 4.95458 4.99313 5.04382 5.06927 5.09517 5.15805 5.19432 5.28251 5.30061 5.38842 5.40211 5.48596 5.49439 5.70870 5.77741 5.93464 6.18406 6.64916 7.01337 7.22284 8.82035 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.003327 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.837502 B = 8412.891617 C = 9111.634103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 N -0.978 5.978 4 C 0.084 3.916 5 C 0.122 3.878 6 C -0.159 4.159 7 C -0.175 4.175 8 O -0.562 6.562 9 S 2.704 3.296 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.696 4.696 13 C -0.017 4.017 14 C -0.150 4.150 15 C -0.001 4.001 16 C 0.012 3.988 17 C -0.526 4.526 18 H 0.026 0.974 19 C 0.010 3.990 20 N -0.947 5.947 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.242 1.242 25 C -0.152 4.152 26 C -0.021 4.021 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.390 0.610 41 H 0.152 0.848 42 H 0.133 0.867 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.269 0.731 46 H 0.132 0.868 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.553 -1.531 22.156 29.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.817 5.817 4 C -0.041 4.041 5 C 0.080 3.920 6 C -0.216 4.216 7 C -0.233 4.233 8 O -0.370 6.370 9 S 2.796 3.204 10 O -0.974 6.974 11 O -0.972 6.972 12 C -0.783 4.783 13 C -0.036 4.036 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.564 4.564 18 H 0.045 0.955 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.165 1.165 25 C -0.171 4.171 26 C -0.040 4.040 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.240 0.760 41 H 0.170 0.830 42 H 0.151 0.849 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.150 0.850 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.393 -1.161 21.216 28.767 hybrid contribution 1.251 -0.336 -0.308 1.332 sum -18.142 -1.498 20.908 27.722 Atomic orbital electron populations 1.22180 0.95153 1.03198 1.02190 1.21788 0.95120 0.80271 1.05262 1.57219 1.78325 1.24480 1.21645 1.22389 1.01706 0.95964 0.84056 1.21497 0.93368 0.83632 0.93510 1.22070 0.96025 1.02562 1.00940 1.22427 1.03678 1.00277 0.96960 1.86532 1.44154 1.28217 1.78113 1.01440 0.73256 0.72719 0.72959 1.93532 1.67877 1.78819 1.57186 1.93498 1.87525 1.30770 1.85389 1.30807 1.23859 1.05947 1.17719 1.20954 0.91381 0.97647 0.93630 1.21300 0.97404 0.96632 1.01547 1.20547 0.96501 0.93500 0.89556 1.18814 0.90326 0.97477 0.95851 1.21065 0.98588 1.35774 1.00944 0.95526 1.25996 1.00147 0.96429 0.96192 1.70053 1.20764 1.47891 1.20010 0.85627 0.77417 0.79082 0.80369 1.18919 1.20902 1.16529 1.21309 0.92465 1.01336 1.02019 1.20942 0.97263 0.93686 0.92115 0.90731 0.94208 0.90114 0.91460 0.85937 0.88129 0.87198 0.90981 0.92368 0.92312 0.90006 0.91941 0.91070 0.75996 0.82998 0.84869 0.94122 0.94378 0.92206 0.84999 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.21 71.98 0.74 -1.47 16 2 C 0.10 1.55 5.94 86.38 0.51 2.07 16 3 N -0.98 -17.86 1.86 -515.80 -0.96 -18.82 16 4 C 0.08 1.11 5.11 86.38 0.44 1.56 16 5 C 0.12 1.59 1.13 -10.79 -0.01 1.57 16 6 C -0.16 -3.04 7.66 71.99 0.55 -2.49 16 7 C -0.18 -1.66 8.82 71.98 0.63 -1.03 16 8 O -0.56 -6.61 10.12 -148.98 -1.51 -8.12 16 9 S 2.70 72.64 5.61 -56.49 -0.32 72.33 16 10 O -0.98 -31.53 16.62 -128.00 -2.13 -33.66 16 11 O -0.98 -29.47 15.50 -128.00 -1.98 -31.45 16 12 C -0.70 -20.87 4.05 22.27 0.09 -20.78 16 13 C -0.02 -0.52 7.44 22.27 0.17 -0.36 16 14 C -0.15 -5.34 9.70 22.27 0.22 -5.12 16 15 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 16 C 0.01 0.57 4.17 29.10 0.12 0.69 16 17 C -0.53 -29.95 9.65 25.60 0.25 -29.70 16 18 H 0.03 1.71 7.98 -2.91 -0.02 1.69 16 19 C 0.01 0.57 5.47 84.65 0.46 1.03 16 20 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 21 Si 0.95 42.66 27.47 68.60 1.88 44.54 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 25 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 27 H 0.07 0.68 7.95 -2.39 -0.02 0.66 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.18 7.69 -2.39 -0.02 1.16 16 31 H 0.12 1.59 5.22 -2.39 -0.01 1.57 16 32 H 0.10 1.48 6.70 -2.39 -0.02 1.47 16 33 H 0.11 0.80 7.95 -2.39 -0.02 0.78 16 34 H 0.07 1.33 7.09 -2.38 -0.02 1.31 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.30 5.22 -2.39 -0.01 1.29 16 37 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.39 1.37 9.04 -74.06 -0.67 0.70 16 41 H 0.15 3.92 7.43 -2.91 -0.02 3.90 16 42 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.04 1.77 7.14 -2.39 -0.02 1.75 16 44 H 0.04 1.65 7.51 -2.38 -0.02 1.63 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 47 H 0.15 3.91 7.78 -2.91 -0.02 3.88 16 Total: -1.00 -75.53 383.52 0.03 -75.50 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.24 Total: 18.20 kcal Atomic # 6 Polarization: -64.39 SS G_CDS: 4.49 Total: -59.90 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -0.66 Total: -77.44 kcal Atomic # 8 Polarization: -67.62 SS G_CDS: -5.62 Total: -73.23 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Atomic # 16 Polarization: 72.64 SS G_CDS: -0.32 Total: 72.33 kcal Total: -75.53 0.03 -75.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885078102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.038 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds