Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99470 * 2 1 4 4 C 1.53005 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46868 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46892 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00098 * 85.00151 * 7 6 5 9 9 S 1.65599 * 120.00111 * 264.99830 * 7 6 5 10 10 O 1.42099 * 106.40401 * 23.54139 * 9 7 6 11 11 O 1.42103 * 106.40122 * 156.46115 * 9 7 6 12 12 C 1.76205 * 107.21913 * 270.00122 * 9 7 6 13 13 C 1.38237 * 119.99944 * 269.72681 * 12 9 7 14 14 C 1.38228 * 119.99822 * 179.76597 * 13 12 9 15 15 C 1.38240 * 119.99917 * 0.50634 * 14 13 12 16 16 C 1.50704 * 119.99792 * 179.72576 * 15 14 13 17 17 C 1.50701 * 109.46916 * 270.02272 * 16 15 14 18 18 H 1.08005 * 120.00117 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99767 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99910 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00318 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47374 * 89.99667 * 21 19 17 23 23 H 1.48494 * 109.47096 * 210.00329 * 21 19 17 24 24 H 1.48500 * 109.46433 * 329.99817 * 21 19 17 25 25 C 1.38229 * 120.00165 * 359.74764 * 15 14 13 26 26 C 1.38227 * 119.99711 * 89.99833 * 12 9 7 27 27 H 1.08993 * 109.47875 * 59.99695 * 1 2 3 28 28 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46930 * 299.99591 * 1 2 3 30 30 H 1.08992 * 109.47259 * 60.00331 * 3 2 1 31 31 H 1.09008 * 109.47254 * 299.99930 * 3 2 1 32 32 H 1.09001 * 109.47197 * 59.99754 * 4 3 2 33 33 H 1.09003 * 109.46579 * 300.00181 * 4 3 2 34 34 H 1.09001 * 109.47272 * 59.99788 * 5 4 3 35 35 H 1.08997 * 109.47149 * 299.99763 * 5 4 3 36 36 H 1.09001 * 109.47188 * 59.99932 * 6 5 4 37 37 H 1.09001 * 109.47155 * 299.99445 * 6 5 4 38 38 H 1.09001 * 109.47060 * 270.00243 * 8 7 6 39 39 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 40 40 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 41 41 H 1.07998 * 120.00039 * 359.97438 * 13 12 9 42 42 H 1.08003 * 120.00273 * 180.23306 * 14 13 12 43 43 H 1.09000 * 109.47411 * 30.01925 * 16 15 14 44 44 H 1.09002 * 109.47201 * 150.02446 * 16 15 14 45 45 H 0.97000 * 120.00693 * 180.02562 * 20 19 17 46 46 H 1.07995 * 119.99963 * 179.97438 * 25 15 14 47 47 H 1.08000 * 120.00682 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6828 2.4617 0.0000 7 7 6.2786 3.8001 0.0000 8 6 6.4756 4.5143 1.2639 9 16 6.7296 4.5057 -1.4287 10 8 5.9530 3.8864 -2.4448 11 8 6.7338 5.9082 -1.1998 12 6 8.4034 4.0461 -1.7319 13 6 9.4339 4.8371 -1.2594 14 6 10.7470 4.4740 -1.4932 15 6 11.0295 3.3253 -2.2085 16 6 12.4611 2.9327 -2.4686 17 6 12.9242 3.5507 -3.7627 18 1 12.2495 4.1666 -4.3389 19 6 14.2092 3.3300 -4.2110 20 7 14.6132 3.8689 -5.3406 21 14 15.3763 2.2653 -3.2142 22 1 15.2478 0.8506 -3.6469 23 1 16.7719 2.7243 -3.4303 24 1 15.0370 2.3748 -1.7726 25 6 9.9991 2.5370 -2.6855 26 6 8.6859 2.8975 -2.4472 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6885 1.8464 0.8899 31 1 1.6884 1.8465 -0.8900 32 1 3.8567 0.6440 -0.8908 33 1 3.8573 0.6437 0.8891 34 1 3.8363 3.1229 0.8904 35 1 3.8357 3.1240 -0.8895 36 1 6.0045 1.9212 -0.8902 37 1 6.0045 1.9205 0.8898 38 1 5.5891 5.1077 1.4879 39 1 6.6431 3.7949 2.0655 40 1 7.3409 5.1716 1.1789 41 1 9.2131 5.7371 -0.7048 42 1 11.5522 5.0900 -1.1208 43 1 13.0893 3.2871 -1.6515 44 1 12.5333 1.8473 -2.5381 45 1 15.5171 3.7134 -5.6563 46 1 10.2198 1.6399 -3.2446 47 1 7.8808 2.2819 -2.8205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885249490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = -108.062944 kcal Electronic energy + Delta-G solvation = -27057.527730 eV Core-core repulsion = 23139.080625 eV Total energy + Delta-G solvation = -3918.447105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.89950 -38.44191 -37.32623 -37.07152 -35.78536 -33.89823 -33.68799 -31.74978 -30.66047 -29.29267 -27.97966 -27.00318 -25.71926 -23.52557 -23.17240 -22.43023 -21.54632 -20.70555 -19.02711 -17.87474 -17.41386 -16.92007 -16.69698 -16.61545 -16.32373 -15.39932 -15.18636 -15.05237 -14.82033 -14.48737 -14.28741 -14.24972 -13.81888 -13.38343 -13.21629 -12.87854 -12.84038 -12.73788 -12.61996 -12.37977 -12.09510 -12.03013 -11.92585 -11.89986 -11.79003 -11.66615 -11.46848 -11.35421 -11.01950 -10.93982 -10.87009 -10.53761 -10.25509 -10.11142 -10.03875 -9.56496 -9.29423 -8.71355 -8.65162 -8.45475 -6.19295 -4.20958 0.40550 1.25004 1.71796 2.90236 3.19539 3.28058 3.28717 3.37592 3.74070 4.02917 4.29781 4.31449 4.45198 4.59236 4.63247 4.86534 4.88880 4.95940 5.00225 5.06489 5.07731 5.16243 5.16493 5.23374 5.26807 5.31693 5.32561 5.36378 5.53099 5.56553 5.61939 5.68777 5.73229 5.81095 5.94983 5.97202 6.14664 6.22721 6.32004 6.45701 6.68791 6.69311 6.78016 6.80205 7.27995 7.28865 7.52643 8.33648 8.84233 9.38813 10.93165 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.002201 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.426309 B =12720.081843 C =13447.354114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.117 4.117 5 C -0.139 4.139 6 C 0.126 3.874 7 N -1.004 6.004 8 C 0.094 3.906 9 S 2.693 3.307 10 O -0.959 6.959 11 O -0.961 6.961 12 C -0.702 4.702 13 C -0.023 4.023 14 C -0.142 4.142 15 C 0.030 3.970 16 C 0.006 3.994 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.023 4.023 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.260 -4.478 16.051 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.155 4.155 5 C -0.178 4.178 6 C 0.001 3.999 7 N -0.841 5.841 8 C -0.051 4.051 9 S 2.786 3.214 10 O -0.949 6.949 11 O -0.951 6.951 12 C -0.791 4.791 13 C -0.043 4.043 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.042 4.042 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.517 -4.085 15.431 28.423 hybrid contribution 1.232 -0.563 0.427 1.421 sum -22.285 -4.648 15.858 27.743 Atomic orbital electron populations 1.22737 0.81034 1.02752 0.99979 1.87871 1.19722 1.28250 1.95440 1.22571 0.94234 0.84533 1.00305 1.21438 0.92970 0.97316 1.03797 1.21966 0.95621 0.96932 1.03330 1.21294 0.92388 0.82455 1.03811 1.57545 1.75769 1.28025 1.22730 1.21485 1.01822 0.96614 0.85198 1.01864 0.74033 0.73245 0.72227 1.93557 1.68411 1.77598 1.55331 1.93556 1.87385 1.29148 1.85049 1.30457 1.22942 1.08283 1.17396 1.20767 0.92402 0.96361 0.94764 1.21219 0.96112 0.97682 1.01114 1.20708 0.97636 0.91317 0.87368 1.18985 0.88006 0.97384 0.98714 1.20823 0.98602 1.32127 1.04277 0.90662 1.24987 0.97837 0.95406 0.94800 1.69886 1.18551 1.44055 1.20656 0.86786 0.80444 0.81001 0.81164 1.20029 1.21057 1.18956 1.21227 0.91900 1.01466 1.01565 1.20770 0.97552 0.93133 0.92767 0.94010 0.89637 0.94159 0.93360 0.93078 0.90482 0.90874 0.91249 0.90726 0.89682 0.90018 0.92394 0.90885 0.90859 0.85186 0.85220 0.94803 0.95227 0.92363 0.85204 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.62 10.70 -35.23 -0.38 -4.00 16 3 C 0.06 0.46 5.94 37.16 0.22 0.68 16 4 C -0.12 -0.87 5.58 -26.73 -0.15 -1.01 16 5 C -0.14 -1.07 5.54 -26.73 -0.15 -1.22 16 6 C 0.13 1.04 5.37 -4.04 -0.02 1.02 16 7 N -1.00 -9.96 3.18 -121.75 -0.39 -10.35 16 8 C 0.09 0.73 10.33 59.85 0.62 1.35 16 9 S 2.69 37.18 5.60 -107.50 -0.60 36.58 16 10 O -0.96 -15.01 16.25 -57.17 -0.93 -15.94 16 11 O -0.96 -15.37 16.35 -57.17 -0.93 -16.30 16 12 C -0.70 -10.89 5.97 -39.59 -0.24 -11.13 16 13 C -0.02 -0.38 9.52 -39.59 -0.38 -0.75 16 14 C -0.14 -2.57 9.70 -39.58 -0.38 -2.95 16 15 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 16 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 17 C -0.52 -14.31 9.65 -34.44 -0.33 -14.64 16 18 H 0.08 2.29 7.98 -52.48 -0.42 1.87 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 21 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 25 C -0.14 -2.57 9.70 -39.58 -0.38 -2.96 16 26 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.72 7.61 -51.93 -0.40 0.33 16 37 H 0.08 0.50 7.96 -51.93 -0.41 0.09 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.40 7.94 -51.93 -0.41 -0.01 16 40 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 41 H 0.13 1.76 7.61 -52.49 -0.40 1.37 16 42 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 43 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 44 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 47 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -34.25 401.84 -10.12 -44.37 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.85 Total: -1.30 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -1.21 Total: -29.04 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.39 Total: -36.34 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -2.24 Total: -36.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: 37.18 SS G_CDS: -0.60 Total: 36.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.25 -10.12 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885249490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.691 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds