Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46981 * 2 1 4 4 C 1.46500 * 120.00531 * 275.95644 * 3 2 1 5 5 C 1.53001 * 109.46987 * 294.10592 * 4 3 2 6 6 H 1.09008 * 109.47272 * 55.05281 * 5 4 3 7 7 C 1.53003 * 109.47327 * 175.05377 * 5 4 3 8 8 O 1.42900 * 109.47205 * 295.05263 * 5 4 3 9 9 C 1.42906 * 113.99875 * 149.99837 * 8 5 4 10 10 S 1.65607 * 119.99955 * 95.96077 * 3 2 1 11 11 O 1.42101 * 106.40046 * 203.53720 * 10 3 2 12 12 O 1.42097 * 106.40083 * 336.45573 * 10 3 2 13 13 C 1.76196 * 107.21990 * 89.99863 * 10 3 2 14 14 C 1.38239 * 119.99888 * 269.72540 * 13 10 3 15 15 C 1.38231 * 120.00058 * 179.76423 * 14 13 10 16 16 C 1.38238 * 119.99927 * 0.48808 * 15 14 13 17 17 C 1.50697 * 120.00056 * 179.76662 * 16 15 14 18 18 C 1.50704 * 109.47407 * 270.02189 * 17 16 15 19 19 H 1.08000 * 119.99657 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00453 * 22 20 18 24 24 H 1.48504 * 109.46782 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47419 * 300.00081 * 22 20 18 26 26 C 1.38235 * 120.00067 * 359.78954 * 16 15 14 27 27 C 1.38233 * 120.00209 * 89.99951 * 13 10 3 28 28 H 1.09007 * 109.47187 * 65.00819 * 1 2 3 29 29 H 1.09004 * 109.47433 * 185.00481 * 1 2 3 30 30 H 1.09000 * 109.47402 * 305.01407 * 1 2 3 31 31 H 1.09003 * 109.47287 * 239.99957 * 2 1 3 32 32 H 1.09006 * 109.46846 * 120.00018 * 2 1 3 33 33 H 1.09001 * 109.46711 * 54.10196 * 4 3 2 34 34 H 1.08998 * 109.47693 * 174.10370 * 4 3 2 35 35 H 1.08998 * 109.46965 * 59.99762 * 7 5 4 36 36 H 1.08993 * 109.47206 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.46560 * 300.00086 * 7 5 4 38 38 H 1.09003 * 109.47025 * 299.99959 * 9 8 5 39 39 H 1.08990 * 109.46679 * 60.00271 * 9 8 5 40 40 H 1.09003 * 109.46689 * 180.02562 * 9 8 5 41 41 H 1.07999 * 119.99827 * 0.02562 * 14 13 10 42 42 H 1.08004 * 120.00111 * 180.25346 * 15 14 13 43 43 H 1.08998 * 109.47062 * 30.02075 * 17 16 15 44 44 H 1.09000 * 109.47259 * 150.01833 * 17 16 15 45 45 H 0.96996 * 119.99776 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.00284 * 179.97438 * 26 16 15 47 47 H 1.07990 * 119.99944 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1383 2.1158 -1.2618 5 6 3.2160 1.4642 -2.1307 6 1 2.9851 0.4072 -2.2642 7 6 3.2563 2.1538 -3.4959 8 8 4.4875 1.5970 -1.4922 9 6 5.3984 0.5354 -1.7844 10 16 2.4347 2.1122 1.4265 11 8 2.3246 3.5119 1.2071 12 8 1.7254 1.4278 2.4500 13 6 4.1440 1.7845 1.7010 14 6 4.5273 0.6607 2.4089 15 6 5.8685 0.4010 2.6201 16 6 6.8260 1.2704 2.1321 17 6 8.2880 0.9901 2.3669 18 6 8.7222 1.6351 3.6578 19 1 8.0106 2.1920 4.2493 20 6 10.0277 1.5134 4.0843 21 7 10.8942 0.8349 3.3643 22 14 10.5661 2.3136 5.6841 23 1 9.7686 1.7595 6.8076 24 1 12.0067 2.0372 5.9155 25 1 10.3512 3.7806 5.6007 26 6 6.4426 2.3972 1.4291 27 6 5.1015 2.6541 1.2134 28 1 -0.3634 0.4342 -0.9315 29 1 -0.3634 -1.0238 0.0897 30 1 -0.3634 0.5896 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.1840 2.0924 -1.7880 34 1 2.4142 3.1499 -1.0555 35 1 3.4872 3.2106 -3.3624 36 1 4.0243 1.6898 -4.1148 37 1 2.2864 2.0524 -3.9829 38 1 4.9704 -0.4115 -1.4551 39 1 5.5801 0.4980 -2.8584 40 1 6.3391 0.7098 -1.2621 41 1 3.7790 -0.0166 2.7933 42 1 6.1681 -0.4791 3.1697 43 1 8.4463 -0.0867 2.4275 44 1 8.8731 1.3974 1.5424 45 1 11.8127 0.7496 3.6641 46 1 7.1906 3.0766 1.0482 47 1 4.8019 3.5345 0.6645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885444601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = -104.639305 kcal Electronic energy + Delta-G solvation = -29137.412022 eV Core-core repulsion = 25219.113377 eV Total energy + Delta-G solvation = -3918.298645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.84453 -38.61780 -37.15599 -36.45797 -35.66885 -33.60911 -32.43540 -31.46991 -30.43401 -30.21693 -27.34385 -26.83405 -25.86608 -23.64275 -23.29217 -22.18277 -21.24866 -20.66581 -18.90155 -17.88572 -17.37149 -16.73133 -16.42033 -16.40079 -15.48954 -15.23189 -15.01721 -14.74075 -14.29596 -14.24678 -14.09570 -13.77201 -13.45520 -13.16472 -12.97862 -12.81522 -12.74451 -12.69010 -12.52035 -12.14266 -12.05047 -11.93798 -11.88986 -11.68789 -11.61100 -11.48501 -11.42291 -11.19440 -10.93726 -10.83734 -10.73927 -10.42923 -10.38594 -9.81707 -9.67951 -9.59531 -9.12536 -8.51030 -8.40814 -8.25244 -6.13902 -4.18402 0.57020 1.49739 1.95931 3.01001 3.28349 3.32154 3.36097 3.64620 3.89591 4.22410 4.40132 4.42150 4.57176 4.67403 4.82329 4.94205 5.01828 5.06889 5.20843 5.22167 5.26692 5.32154 5.35071 5.38371 5.40866 5.44538 5.56053 5.58641 5.70174 5.82662 5.83700 5.88896 5.94644 5.99333 6.03561 6.03965 6.39232 6.45529 6.48690 6.67724 6.96773 7.01183 7.14233 7.35457 7.54701 7.66827 7.81504 8.18211 8.86284 9.46306 10.96131 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.003372 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.555959 B = 8301.549606 C = 9139.605434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.994 5.994 4 C 0.120 3.880 5 C 0.064 3.936 6 H 0.064 0.936 7 C -0.174 4.174 8 O -0.370 6.370 9 C 0.035 3.965 10 S 2.693 3.307 11 O -0.966 6.966 12 O -0.966 6.966 13 C -0.693 4.693 14 C -0.026 4.026 15 C -0.149 4.149 16 C 0.025 3.975 17 C 0.041 3.959 18 C -0.516 4.516 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.147 4.147 27 C 0.006 3.994 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.437 -2.411 -14.242 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.829 5.829 4 C -0.006 4.006 5 C 0.004 3.996 6 H 0.082 0.918 7 C -0.232 4.232 8 O -0.289 6.289 9 C -0.061 4.061 10 S 2.788 3.212 11 O -0.956 6.956 12 O -0.956 6.956 13 C -0.783 4.783 14 C -0.045 4.045 15 C -0.168 4.168 16 C 0.024 3.976 17 C 0.004 3.996 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.166 4.166 27 C -0.014 4.014 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.796 -1.841 -13.601 23.274 hybrid contribution 1.210 -0.231 0.476 1.321 sum -17.585 -2.072 -13.126 22.041 Atomic orbital electron populations 1.22201 0.95834 1.02508 1.02495 1.21203 0.94499 0.81555 1.03261 1.57558 1.79521 1.23577 1.22279 1.21523 0.97888 0.96841 0.84303 1.22565 0.85229 0.99556 0.92220 0.91810 1.22233 1.02158 1.02277 0.96516 1.88002 1.23370 1.46663 1.70856 1.22753 0.94052 0.89818 0.99494 1.01731 0.74262 0.73106 0.72090 1.93531 1.86996 1.29919 1.85154 1.93542 1.71705 1.75374 1.54984 1.30206 1.23510 1.07343 1.17246 1.20686 0.96783 0.93761 0.93287 1.21152 0.92119 1.01188 1.02358 1.21030 0.98764 0.90754 0.87037 1.18496 0.85037 0.98155 0.97863 1.20953 0.95174 1.33685 1.05614 0.92369 1.24993 0.96511 0.95194 0.97421 1.69937 1.04170 1.40686 1.38342 0.86553 0.77484 0.79970 0.83461 1.20059 1.21153 1.20043 1.21153 0.95310 0.98438 1.01701 1.20609 0.92666 0.95554 0.92576 0.92439 0.91461 0.91816 0.90680 0.89854 0.89445 0.87863 0.91364 0.92190 0.91682 0.94326 0.94542 0.89217 0.85816 0.85778 0.94954 0.94900 0.92646 0.85787 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.23 37.16 0.38 -0.96 16 2 C 0.12 1.06 5.98 -4.05 -0.02 1.03 16 3 N -0.99 -10.80 2.83 -114.38 -0.32 -11.13 16 4 C 0.12 1.10 5.51 -4.04 -0.02 1.08 16 5 C 0.06 0.56 2.78 -26.73 -0.07 0.48 16 6 H 0.06 0.48 6.39 -51.92 -0.33 0.15 16 7 C -0.17 -1.24 9.53 37.16 0.35 -0.88 16 8 O -0.37 -4.29 9.01 -35.23 -0.32 -4.61 16 9 C 0.04 0.38 10.82 101.05 1.09 1.47 16 10 S 2.69 40.06 5.65 -107.50 -0.61 39.45 16 11 O -0.97 -16.37 15.80 -57.17 -0.90 -17.27 16 12 O -0.97 -16.08 16.23 -57.17 -0.93 -17.01 16 13 C -0.69 -11.38 5.96 -39.58 -0.24 -11.62 16 14 C -0.03 -0.43 9.52 -39.58 -0.38 -0.80 16 15 C -0.15 -2.81 9.70 -39.58 -0.38 -3.19 16 16 C 0.02 0.51 5.07 -104.62 -0.53 -0.02 16 17 C 0.04 1.02 5.10 -29.03 -0.15 0.87 16 18 C -0.52 -14.14 9.09 -34.44 -0.31 -14.45 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 22 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.15 -2.79 9.70 -39.58 -0.38 -3.17 16 27 C 0.01 0.10 8.26 -39.58 -0.33 -0.23 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.51 6.68 -51.93 -0.35 0.16 16 32 H 0.08 0.77 7.58 -51.93 -0.39 0.38 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.07 6.84 -51.93 -0.35 0.72 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 39 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.12 1.80 7.61 -52.49 -0.40 1.40 16 42 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 43 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 47 H 0.13 1.97 7.62 -52.49 -0.40 1.57 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -32.53 398.24 -10.10 -42.63 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.65 Total: -0.59 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: -1.09 Total: -28.81 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.41 Total: -36.10 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.15 Total: -38.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 40.06 SS G_CDS: -0.61 Total: 39.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.53 -10.10 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885444601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.010 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds