Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46981 * 2 1 4 4 C 1.46500 * 120.00531 * 275.95644 * 3 2 1 5 5 C 1.53001 * 109.46987 * 294.10592 * 4 3 2 6 6 H 1.09008 * 109.47272 * 55.05281 * 5 4 3 7 7 C 1.53003 * 109.47327 * 175.05377 * 5 4 3 8 8 O 1.42900 * 109.47205 * 295.05263 * 5 4 3 9 9 C 1.42906 * 113.99875 * 149.99837 * 8 5 4 10 10 S 1.65607 * 119.99955 * 95.96077 * 3 2 1 11 11 O 1.42101 * 106.40046 * 203.53720 * 10 3 2 12 12 O 1.42097 * 106.40083 * 336.45573 * 10 3 2 13 13 C 1.76196 * 107.21990 * 89.99863 * 10 3 2 14 14 C 1.38239 * 119.99888 * 269.72540 * 13 10 3 15 15 C 1.38231 * 120.00058 * 179.76423 * 14 13 10 16 16 C 1.38238 * 119.99927 * 0.48808 * 15 14 13 17 17 C 1.50697 * 120.00056 * 179.76662 * 16 15 14 18 18 C 1.50704 * 109.47407 * 270.02189 * 17 16 15 19 19 H 1.08000 * 119.99657 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00453 * 22 20 18 24 24 H 1.48504 * 109.46782 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47419 * 300.00081 * 22 20 18 26 26 C 1.38235 * 120.00067 * 359.78954 * 16 15 14 27 27 C 1.38233 * 120.00209 * 89.99951 * 13 10 3 28 28 H 1.09007 * 109.47187 * 65.00819 * 1 2 3 29 29 H 1.09004 * 109.47433 * 185.00481 * 1 2 3 30 30 H 1.09000 * 109.47402 * 305.01407 * 1 2 3 31 31 H 1.09003 * 109.47287 * 239.99957 * 2 1 3 32 32 H 1.09006 * 109.46846 * 120.00018 * 2 1 3 33 33 H 1.09001 * 109.46711 * 54.10196 * 4 3 2 34 34 H 1.08998 * 109.47693 * 174.10370 * 4 3 2 35 35 H 1.08998 * 109.46965 * 59.99762 * 7 5 4 36 36 H 1.08993 * 109.47206 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.46560 * 300.00086 * 7 5 4 38 38 H 1.09003 * 109.47025 * 299.99959 * 9 8 5 39 39 H 1.08990 * 109.46679 * 60.00271 * 9 8 5 40 40 H 1.09003 * 109.46689 * 180.02562 * 9 8 5 41 41 H 1.07999 * 119.99827 * 0.02562 * 14 13 10 42 42 H 1.08004 * 120.00111 * 180.25346 * 15 14 13 43 43 H 1.08998 * 109.47062 * 30.02075 * 17 16 15 44 44 H 1.09000 * 109.47259 * 150.01833 * 17 16 15 45 45 H 0.96996 * 119.99776 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.00284 * 179.97438 * 26 16 15 47 47 H 1.07990 * 119.99944 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1383 2.1158 -1.2618 5 6 3.2160 1.4642 -2.1307 6 1 2.9851 0.4072 -2.2642 7 6 3.2563 2.1538 -3.4959 8 8 4.4875 1.5970 -1.4922 9 6 5.3984 0.5354 -1.7844 10 16 2.4347 2.1122 1.4265 11 8 2.3246 3.5119 1.2071 12 8 1.7254 1.4278 2.4500 13 6 4.1440 1.7845 1.7010 14 6 4.5273 0.6607 2.4089 15 6 5.8685 0.4010 2.6201 16 6 6.8260 1.2704 2.1321 17 6 8.2880 0.9901 2.3669 18 6 8.7222 1.6351 3.6578 19 1 8.0106 2.1920 4.2493 20 6 10.0277 1.5134 4.0843 21 7 10.8942 0.8349 3.3643 22 14 10.5661 2.3136 5.6841 23 1 9.7686 1.7595 6.8076 24 1 12.0067 2.0372 5.9155 25 1 10.3512 3.7806 5.6007 26 6 6.4426 2.3972 1.4291 27 6 5.1015 2.6541 1.2134 28 1 -0.3634 0.4342 -0.9315 29 1 -0.3634 -1.0238 0.0897 30 1 -0.3634 0.5896 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.1840 2.0924 -1.7880 34 1 2.4142 3.1499 -1.0555 35 1 3.4872 3.2106 -3.3624 36 1 4.0243 1.6898 -4.1148 37 1 2.2864 2.0524 -3.9829 38 1 4.9704 -0.4115 -1.4551 39 1 5.5801 0.4980 -2.8584 40 1 6.3391 0.7098 -1.2621 41 1 3.7790 -0.0166 2.7933 42 1 6.1681 -0.4791 3.1697 43 1 8.4463 -0.0867 2.4275 44 1 8.8731 1.3974 1.5424 45 1 11.8127 0.7496 3.6641 46 1 7.1906 3.0766 1.0482 47 1 4.8019 3.5345 0.6645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885444601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -124.833388 kcal Electronic energy + Delta-G solvation = -29138.287703 eV Core-core repulsion = 25219.113377 eV Total energy + Delta-G solvation = -3919.174326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15818 -39.55187 -38.39741 -37.28780 -36.92133 -35.56807 -33.26688 -33.10643 -31.87492 -30.90502 -29.19327 -27.59723 -26.61208 -25.54243 -24.00922 -23.60413 -22.44180 -21.82968 -20.00198 -18.94860 -18.63608 -18.48679 -17.58862 -17.27775 -16.83668 -16.43273 -16.24499 -15.93706 -15.72280 -15.45658 -15.18110 -14.81512 -14.58033 -14.38708 -14.27420 -13.92543 -13.83446 -13.51984 -13.43320 -13.38317 -13.34702 -13.21688 -13.17096 -12.97897 -12.70479 -12.65820 -12.64495 -12.45403 -12.28992 -12.10758 -11.98300 -11.85684 -11.67578 -11.51665 -11.28950 -10.64252 -10.56210 -10.01054 -9.85152 -9.79099 -8.26191 -6.38723 -0.60295 0.05042 0.50594 1.38217 1.39952 1.48339 1.95516 2.35788 2.63092 2.82311 2.99042 3.06229 3.28080 3.80277 3.92062 3.99220 4.03919 4.17636 4.21887 4.32655 4.33712 4.43441 4.48420 4.53507 4.55174 4.61236 4.62733 4.75698 4.85375 4.90005 4.94182 4.97520 4.98360 5.01165 5.10040 5.20362 5.25855 5.27696 5.29474 5.40289 5.41684 5.43924 5.68258 5.69642 5.92450 5.99229 6.13739 6.41011 6.72809 7.30118 8.83589 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.003372 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.555959 B = 8301.549606 C = 9139.605434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.983 5.983 4 C 0.113 3.887 5 C 0.060 3.940 6 H 0.082 0.918 7 C -0.170 4.170 8 O -0.395 6.395 9 C 0.037 3.963 10 S 2.710 3.290 11 O -0.986 6.986 12 O -0.982 6.982 13 C -0.690 4.690 14 C -0.020 4.020 15 C -0.156 4.156 16 C -0.001 4.001 17 C 0.052 3.948 18 C -0.535 4.535 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.153 4.153 27 C 0.010 3.990 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.150 0.850 42 H 0.126 0.874 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.267 0.733 46 H 0.121 0.879 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.866 -2.626 -15.099 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 N -0.822 5.822 4 C -0.011 4.011 5 C 0.001 3.999 6 H 0.100 0.900 7 C -0.228 4.228 8 O -0.314 6.314 9 C -0.060 4.060 10 S 2.802 3.198 11 O -0.977 6.977 12 O -0.972 6.972 13 C -0.778 4.778 14 C -0.039 4.039 15 C -0.175 4.175 16 C -0.001 4.001 17 C 0.015 3.985 18 C -0.572 4.572 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.787 3.213 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.172 4.172 27 C -0.009 4.009 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.144 0.856 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.139 0.861 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.207 -2.057 -14.453 25.746 hybrid contribution 1.826 -0.188 0.623 1.938 sum -19.381 -2.246 -13.830 23.915 Atomic orbital electron populations 1.22209 0.94852 1.03381 1.02514 1.21505 0.95329 0.80171 1.04373 1.57310 1.78701 1.24649 1.21504 1.21811 0.99808 0.95927 0.83594 1.22751 0.83770 1.00782 0.92566 0.90043 1.22205 1.03516 1.01400 0.95658 1.87968 1.24664 1.47071 1.71710 1.22694 0.93119 0.89923 1.00233 1.01214 0.73181 0.72620 0.72736 1.93504 1.86868 1.31560 1.85741 1.93518 1.71469 1.75584 1.56667 1.30676 1.24911 1.06447 1.15716 1.20912 0.96232 0.94166 0.92583 1.21197 0.92819 1.01004 1.02452 1.20704 0.96900 0.92685 0.89795 1.18215 0.87702 0.96372 0.96217 1.21279 0.95484 1.33791 1.06676 0.92945 1.25841 0.96552 0.95649 1.00786 1.70045 1.04543 1.41820 1.40047 0.85542 0.77345 0.79095 0.79361 1.19369 1.20314 1.19472 1.21133 0.96341 0.97947 1.01740 1.20703 0.91814 0.96097 0.92321 0.90729 0.89814 0.93892 0.87960 0.90427 0.85943 0.89244 0.92345 0.92231 0.89316 0.93585 0.92836 0.91813 0.83259 0.85594 0.96950 0.97089 0.92399 0.86143 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.23 71.98 0.74 -1.37 16 2 C 0.11 1.58 5.98 86.38 0.52 2.10 16 3 N -0.98 -18.78 2.83 -515.79 -1.46 -20.24 16 4 C 0.11 1.74 5.51 86.38 0.48 2.21 16 5 C 0.06 0.88 2.78 30.60 0.09 0.96 16 6 H 0.08 0.91 6.39 -2.38 -0.02 0.89 16 7 C -0.17 -1.94 9.53 71.98 0.69 -1.25 16 8 O -0.39 -8.63 9.01 -148.98 -1.34 -9.98 16 9 C 0.04 0.76 10.82 113.37 1.23 1.99 16 10 S 2.71 76.25 5.65 -56.49 -0.32 75.93 16 11 O -0.99 -32.18 15.80 -128.00 -2.02 -34.20 16 12 O -0.98 -31.07 16.23 -128.00 -2.08 -33.15 16 13 C -0.69 -22.02 5.96 22.27 0.13 -21.89 16 14 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 15 C -0.16 -5.95 9.70 22.27 0.22 -5.73 16 16 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 17 C 0.05 2.69 5.10 29.10 0.15 2.84 16 18 C -0.53 -30.24 9.09 25.60 0.23 -30.01 16 19 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.01 0.60 5.46 84.65 0.46 1.07 16 21 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 22 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C -0.15 -5.98 9.70 22.27 0.22 -5.76 16 27 C 0.01 0.34 8.26 22.27 0.18 0.52 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.94 6.68 -2.39 -0.02 0.93 16 32 H 0.08 1.22 7.58 -2.38 -0.02 1.21 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.67 6.84 -2.39 -0.02 1.66 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 37 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.05 0.89 7.87 -2.39 -0.02 0.87 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.15 4.06 7.61 -2.91 -0.02 4.04 16 42 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 44 H 0.01 0.60 8.09 -2.39 -0.02 0.58 16 45 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 47 H 0.14 4.31 7.62 -2.92 -0.02 4.28 16 Total: -1.00 -71.40 398.24 1.46 -69.94 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.94 Total: 14.74 kcal Atomic # 6 Polarization: -60.29 SS G_CDS: 5.43 Total: -54.86 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.17 Total: -74.61 kcal Atomic # 8 Polarization: -71.88 SS G_CDS: -5.44 Total: -77.32 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 76.25 SS G_CDS: -0.32 Total: 75.93 kcal Total: -71.40 1.46 -69.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885444601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.894 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds