Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47594 * 2 1 4 4 C 1.46503 * 119.99983 * 84.99814 * 3 2 1 5 5 C 1.52996 * 109.47064 * 85.00219 * 4 3 2 6 6 H 1.08999 * 109.47548 * 60.00086 * 5 4 3 7 7 C 1.53004 * 109.47175 * 179.97438 * 5 4 3 8 8 O 1.42907 * 109.47108 * 299.99603 * 5 4 3 9 9 C 1.42896 * 113.99718 * 149.99968 * 8 5 4 10 10 S 1.65598 * 119.99686 * 265.00117 * 3 2 1 11 11 O 1.42094 * 104.27897 * 26.06716 * 10 3 2 12 12 O 1.42104 * 104.27398 * 153.92731 * 10 3 2 13 13 C 1.81404 * 104.44549 * 269.99557 * 10 3 2 14 14 C 1.50708 * 109.46899 * 180.02562 * 13 10 3 15 15 C 1.38632 * 119.74714 * 269.72937 * 14 13 10 16 16 C 1.37623 * 120.24439 * 179.71941 * 15 14 13 17 17 C 1.40706 * 119.74386 * 0.57322 * 16 15 14 18 18 C 1.41403 * 120.24459 * 179.67861 * 17 16 15 19 19 H 1.07996 * 120.00057 * 204.40509 * 18 17 16 20 20 C 1.39950 * 119.99554 * 24.40946 * 18 17 16 21 21 N 1.30824 * 120.00349 * 17.84402 * 20 18 17 22 22 Si 1.86803 * 119.99802 * 197.84638 * 20 18 17 23 23 H 1.48497 * 109.46925 * 59.99719 * 22 20 18 24 24 H 1.48496 * 109.47210 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47022 * 300.00036 * 22 20 18 26 26 C 1.40720 * 119.51583 * 359.69747 * 17 16 15 27 27 C 1.37615 * 119.74018 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46877 * 59.99707 * 1 2 3 29 29 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46868 * 300.00432 * 1 2 3 31 31 H 1.09003 * 109.47313 * 239.99272 * 2 1 3 32 32 H 1.09006 * 109.46877 * 120.00293 * 2 1 3 33 33 H 1.08999 * 109.46868 * 324.99888 * 4 3 2 34 34 H 1.09002 * 109.46734 * 205.00280 * 4 3 2 35 35 H 1.08993 * 109.47076 * 179.97438 * 7 5 4 36 36 H 1.09009 * 109.46923 * 59.99700 * 7 5 4 37 37 H 1.08998 * 109.47034 * 300.00472 * 7 5 4 38 38 H 1.08998 * 109.47289 * 300.00154 * 9 8 5 39 39 H 1.09002 * 109.47086 * 59.99992 * 9 8 5 40 40 H 1.08996 * 109.47008 * 180.02562 * 9 8 5 41 41 H 1.08995 * 109.47223 * 299.99813 * 13 10 3 42 42 H 1.08993 * 109.47129 * 60.00326 * 13 10 3 43 43 H 1.07995 * 119.87664 * 359.97438 * 15 14 13 44 44 H 1.07997 * 120.12534 * 180.27693 * 16 15 14 45 45 H 0.96990 * 120.00213 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.13063 * 179.97438 * 26 17 16 47 47 H 1.08004 * 119.87431 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 1.2639 5 6 3.5152 1.7838 1.8918 6 1 4.3118 2.0827 1.2105 7 6 3.6617 2.5441 3.2115 8 8 3.6017 0.3789 2.1388 9 6 4.9301 -0.1430 2.0675 10 16 2.4123 2.1200 -1.4287 11 8 1.6209 1.4494 -2.3999 12 8 2.2335 3.5054 -1.1676 13 6 4.1698 1.7386 -1.6660 14 6 4.6510 2.3651 -2.9494 15 6 4.5778 1.6490 -4.1342 16 6 5.0089 2.2133 -5.3131 17 6 5.5366 3.5177 -5.3106 18 6 5.9889 4.1052 -6.5146 19 1 6.7260 4.8941 -6.4869 20 6 5.4814 3.6645 -7.7421 21 7 4.3664 2.9812 -7.7816 22 14 6.3960 4.0517 -9.3242 23 1 7.7574 3.4614 -9.2660 24 1 5.6567 3.4771 -10.4767 25 1 6.5014 5.5240 -9.4874 26 6 5.6113 4.2331 -4.1011 27 6 5.1690 3.6510 -2.9353 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3618 1.8097 1.9452 34 1 2.0923 3.1802 1.0755 35 1 4.6281 2.3123 3.6590 36 1 2.8650 2.2456 3.8931 37 1 3.5957 3.6156 3.0227 38 1 5.3372 0.0343 1.0720 39 1 5.5557 0.3532 2.8095 40 1 4.9106 -1.2145 2.2661 41 1 4.7442 2.1372 -0.8299 42 1 4.3035 0.6581 -1.7164 43 1 4.1771 0.6461 -4.1327 44 1 4.9468 1.6554 -6.2356 45 1 4.0149 2.6754 -8.6323 46 1 6.0149 5.2347 -4.0878 47 1 5.2249 4.1982 -2.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885444913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = -108.915658 kcal Electronic energy + Delta-G solvation = -28624.435682 eV Core-core repulsion = 24705.951600 eV Total energy + Delta-G solvation = -3918.484082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.81883 -37.78907 -36.68327 -36.25147 -35.34916 -34.17081 -32.50518 -31.50921 -29.92481 -29.44692 -27.86023 -26.95060 -25.77616 -24.23845 -22.67853 -21.55647 -21.15855 -20.25630 -18.51605 -17.61935 -17.44004 -16.79286 -16.18704 -16.04254 -15.49291 -15.42604 -15.08467 -14.57550 -14.46005 -13.95160 -13.80994 -13.71602 -13.47146 -12.99674 -12.79616 -12.68080 -12.56976 -12.30397 -12.20349 -12.08850 -11.90883 -11.84927 -11.68386 -11.57544 -11.53733 -11.36675 -11.23314 -11.15586 -11.02982 -10.94347 -10.76180 -10.62441 -10.28529 -9.95707 -9.75849 -9.53578 -9.24978 -8.85746 -7.62101 -7.45068 -6.91338 -4.49698 0.63179 2.63927 2.94881 3.00182 3.00760 3.01971 3.11159 3.56113 3.82218 4.27204 4.48489 4.49226 4.58024 4.72948 4.92329 4.96348 5.13459 5.17765 5.23335 5.29146 5.35262 5.38752 5.43539 5.49172 5.53690 5.56664 5.61214 5.73624 5.76310 5.89026 5.94843 6.05119 6.18225 6.24254 6.25210 6.34589 6.72676 6.82766 6.91887 7.00190 7.09388 7.18317 7.45289 7.66041 7.89410 7.89914 8.12463 8.47411 8.72017 8.79976 10.02079 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.002926 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.846405 B = 9566.962999 C =10119.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -1.001 6.001 4 C 0.119 3.881 5 C 0.060 3.940 6 H 0.062 0.938 7 C -0.174 4.174 8 O -0.376 6.376 9 C 0.027 3.973 10 S 2.572 3.428 11 O -0.955 6.955 12 O -0.963 6.963 13 C -0.522 4.522 14 C -0.238 4.238 15 C -0.081 4.081 16 C -0.166 4.166 17 C 0.118 3.882 18 C -0.450 4.450 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.779 5.779 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.226 4.226 27 C -0.069 4.069 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.286 0.714 46 H 0.099 0.901 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -6.128 16.866 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.002 4.002 3 N -0.836 5.836 4 C -0.007 4.007 5 C 0.001 3.999 6 H 0.080 0.920 7 C -0.232 4.232 8 O -0.295 6.295 9 C -0.070 4.070 10 S 2.673 3.327 11 O -0.945 6.945 12 O -0.954 6.954 13 C -0.652 4.652 14 C -0.243 4.243 15 C -0.100 4.100 16 C -0.186 4.186 17 C 0.114 3.886 18 C -0.479 4.479 19 H 0.101 0.899 20 C -0.147 4.147 21 N -0.403 5.403 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.246 4.246 27 C -0.088 4.088 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.097 0.903 46 H 0.117 0.883 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.171 -5.896 16.290 17.460 hybrid contribution 1.185 -0.060 -0.469 1.276 sum -0.987 -5.956 15.821 16.934 Atomic orbital electron populations 1.22197 0.96468 1.01920 1.02448 1.21214 0.94197 0.81602 1.03235 1.57818 1.80347 1.23690 1.21712 1.21500 0.96019 0.97631 0.85586 1.22813 0.98819 0.82011 0.96292 0.92008 1.22234 1.02604 1.00775 0.97586 1.87900 1.27340 1.22225 1.92062 1.22806 0.84365 0.99520 1.00265 1.06827 0.78859 0.74315 0.72736 1.93535 1.66573 1.75425 1.58992 1.93499 1.86005 1.32045 1.83828 1.29044 1.22204 1.09057 1.04892 1.18104 1.17852 0.97453 0.90865 1.20602 0.98998 0.97795 0.92636 1.21319 1.04925 0.95795 0.96569 1.17725 0.87843 0.90822 0.92184 1.19710 1.20658 1.17347 0.90152 0.89938 1.26025 0.93823 0.93200 1.01626 1.69814 1.14943 1.26426 1.29069 0.86279 0.80491 0.79938 0.79589 1.18649 1.20132 1.18793 1.20970 1.11010 0.99421 0.93154 1.20445 0.97590 0.93673 0.97108 0.91839 0.91921 0.92729 0.90706 0.89415 0.89561 0.87577 0.92232 0.91533 0.91080 0.93798 0.94246 0.89736 0.86744 0.86275 0.88749 0.85940 0.90289 0.88330 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.12 1.47 5.75 -4.04 -0.02 1.44 16 3 N -1.00 -13.46 2.68 -114.38 -0.31 -13.77 16 4 C 0.12 1.34 5.42 -4.04 -0.02 1.31 16 5 C 0.06 0.60 2.99 -26.73 -0.08 0.52 16 6 H 0.06 0.63 6.60 -51.93 -0.34 0.28 16 7 C -0.17 -1.39 9.53 37.16 0.35 -1.04 16 8 O -0.38 -3.82 8.46 -35.23 -0.30 -4.11 16 9 C 0.03 0.22 10.82 101.05 1.09 1.32 16 10 S 2.57 46.15 5.35 -107.50 -0.58 45.58 16 11 O -0.96 -20.19 16.75 -57.54 -0.96 -21.16 16 12 O -0.96 -19.71 16.53 -57.54 -0.95 -20.66 16 13 C -0.52 -8.77 6.30 36.01 0.23 -8.54 16 14 C -0.24 -5.19 5.16 -104.33 -0.54 -5.73 16 15 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 16 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 17 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 18 C -0.45 -11.59 9.05 -37.74 -0.34 -11.94 16 19 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 20 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.78 -19.79 10.95 55.55 0.61 -19.18 16 22 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 27 C -0.07 -1.54 9.67 -39.66 -0.38 -1.93 16 28 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.90 7.61 -51.93 -0.40 0.51 16 32 H 0.09 0.91 6.52 -51.93 -0.34 0.57 16 33 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.11 1.24 6.82 -51.93 -0.35 0.89 16 35 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.11 1.61 6.90 -51.93 -0.36 1.25 16 42 H 0.12 1.72 8.08 -51.93 -0.42 1.30 16 43 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 45 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 46 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 47 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -31.53 395.04 -10.22 -41.74 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.53 Total: 7.41 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.12 Total: -34.78 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.30 Total: -32.95 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.21 Total: -45.94 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 46.15 SS G_CDS: -0.58 Total: 45.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.53 -10.22 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885444913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.172 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds