Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40081 * 126.03649 * 2 1 4 4 C 1.30840 * 108.20420 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.90111 * 179.97438 * 4 3 2 6 6 N 1.46508 * 109.46979 * 275.02187 * 5 4 3 7 7 C 1.34775 * 119.99759 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00221 * 359.97438 * 7 6 5 9 9 C 1.47538 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.39667 * 120.19899 * 359.97438 * 9 7 6 11 11 C 1.37827 * 119.91974 * 180.02562 * 10 9 7 12 12 C 1.38567 * 120.32168 * 359.97438 * 11 10 9 13 13 C 1.38018 * 120.40588 * 0.02562 * 12 11 10 14 14 C 1.38838 * 120.06990 * 0.02562 * 13 12 11 15 15 O 1.35520 * 120.15763 * 179.97438 * 14 13 12 16 16 C 1.34814 * 117.00329 * 354.39850 * 15 14 13 17 17 H 1.07997 * 119.99773 * 5.06346 * 16 15 14 18 18 C 1.38697 * 119.99986 * 185.06090 * 16 15 14 19 19 N 1.31519 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46992 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47402 * 120.00114 * 20 18 16 23 23 H 1.48499 * 109.47443 * 240.00616 * 20 18 16 24 24 C 1.39874 * 108.20077 * 0.23881 * 4 3 2 25 25 C 1.34947 * 126.03376 * 180.02562 * 2 1 3 26 26 C 1.50699 * 126.12896 * 359.97438 * 25 2 1 27 27 C 1.52996 * 117.49911 * 213.74608 * 26 25 2 28 28 C 1.53001 * 117.49649 * 145.09005 * 26 25 2 29 29 H 1.08991 * 109.46968 * 90.02468 * 1 2 3 30 30 H 1.08997 * 109.46808 * 210.02990 * 1 2 3 31 31 H 1.09004 * 109.46754 * 330.02447 * 1 2 3 32 32 H 1.08998 * 109.47364 * 155.02336 * 5 4 3 33 33 H 1.08996 * 109.47390 * 35.01565 * 5 4 3 34 34 H 0.97000 * 119.99779 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.03846 * 0.02562 * 10 9 7 36 36 H 1.08006 * 119.83463 * 180.02562 * 11 10 9 37 37 H 1.08006 * 119.79500 * 179.74838 * 12 11 10 38 38 H 1.08006 * 119.96945 * 180.02562 * 13 12 11 39 39 H 0.97004 * 120.00647 * 179.97438 * 19 18 16 40 40 H 1.07999 * 126.03769 * 179.72332 * 24 4 3 41 41 H 1.08996 * 115.54828 * 359.42326 * 26 25 2 42 42 H 1.09000 * 117.50150 * 0.02562 * 27 26 25 43 43 H 1.09003 * 117.49616 * 145.02142 * 27 26 25 44 44 H 1.09008 * 117.49633 * 214.98414 * 28 26 25 45 45 H 1.08998 * 117.50017 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 4.7497 1.6235 -0.0013 6 7 5.0712 2.0097 -1.3775 7 6 6.1270 2.8104 -1.6235 8 8 6.8124 3.2127 -0.7034 9 6 6.4505 3.1997 -3.0094 10 6 5.6656 2.7404 -4.0695 11 6 5.9733 3.1072 -5.3619 12 6 7.0583 3.9309 -5.6159 13 6 7.8428 4.3925 -4.5785 14 6 7.5486 4.0324 -3.2703 15 8 8.3180 4.4843 -2.2503 16 6 9.4220 5.1843 -2.5800 17 1 9.6155 5.4325 -3.6130 18 6 10.3093 5.5856 -1.5923 19 7 10.0739 5.2830 -0.3343 20 14 11.8386 6.5562 -2.0490 21 1 11.8712 6.7660 -3.5188 22 1 11.8131 7.8725 -1.3620 23 1 13.0471 5.8021 -1.6293 24 6 3.5437 -0.6666 -0.0065 25 6 2.2589 -1.0913 -0.0005 26 6 1.7973 -2.5258 -0.0006 27 6 2.6554 -3.5441 0.7528 28 6 2.6401 -3.5390 -0.7778 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5135 32 1 5.5940 1.0875 0.4323 33 1 4.5452 2.5171 0.5883 34 1 4.5247 1.6884 -2.1116 35 1 4.8187 2.0985 -3.8767 36 1 5.3652 2.7515 -6.1806 37 1 7.2941 4.2097 -6.6324 38 1 8.6866 5.0345 -4.7845 39 1 10.6946 5.5633 0.3565 40 1 4.4211 -1.2963 -0.0125 41 1 0.7172 -2.6721 0.0097 42 1 3.5536 -3.1764 1.2489 43 1 2.1398 -4.3605 1.2585 44 1 2.1144 -4.3522 -1.2785 45 1 3.5281 -3.1680 -1.2893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885915113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 77.220161 kcal Electronic energy + Delta-G solvation = -28283.478730 eV Core-core repulsion = 24269.914903 eV Total energy + Delta-G solvation = -4013.563827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55761 -39.49806 -38.01807 -37.41392 -36.28248 -34.74182 -32.94190 -32.28786 -30.64819 -29.99464 -28.87685 -28.03088 -25.53564 -25.14091 -23.76653 -22.79193 -22.78073 -21.35650 -20.22604 -19.81133 -19.45794 -18.00495 -17.70847 -17.06067 -16.08129 -15.80907 -15.45051 -15.22449 -14.94953 -14.61106 -14.32378 -14.18680 -14.15690 -13.98900 -13.69504 -13.47964 -13.05520 -12.95968 -12.65276 -12.53367 -12.45238 -12.22923 -11.94826 -11.78675 -11.67588 -11.31830 -11.27636 -11.07352 -11.06888 -10.87335 -10.72737 -10.58497 -10.40811 -9.54456 -9.30917 -8.84082 -8.76011 -8.59448 -8.49008 -8.21310 -7.25783 -6.39810 -3.99646 1.56937 1.77385 2.25906 2.36975 2.45686 3.15038 3.15764 3.21507 3.54767 3.81457 3.94606 3.97433 4.07124 4.23731 4.45647 4.54607 4.56342 4.69892 4.78179 4.87384 5.11001 5.12011 5.22209 5.24407 5.25944 5.31380 5.48967 5.53940 5.58694 5.61820 5.72045 5.75743 5.82433 5.94144 6.11755 6.16006 6.17378 6.48380 6.61643 6.74101 6.80169 6.96034 6.98663 7.11535 7.28764 7.34200 7.58821 7.74484 7.96971 8.19120 8.99839 9.15773 9.72870 10.74111 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.002382 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.146889 B =11753.285993 C =12545.299077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 N -0.276 5.276 4 C 0.068 3.932 5 C 0.207 3.793 6 N -0.737 5.737 7 C 0.556 3.444 8 O -0.500 6.500 9 C -0.224 4.224 10 C -0.037 4.037 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.832 5.832 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.255 4.255 25 C 0.114 3.886 26 C -0.107 4.107 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.270 0.730 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 -16.152 -1.839 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 N -0.099 5.099 4 C -0.099 4.099 5 C 0.082 3.918 6 N -0.394 5.394 7 C 0.346 3.654 8 O -0.374 6.374 9 C -0.229 4.229 10 C -0.056 4.056 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.022 6.022 16 C -0.479 4.479 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.284 4.284 25 C -0.013 4.013 26 C -0.127 4.127 27 C -0.198 4.198 28 C -0.197 4.197 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.924 -14.773 -0.592 23.235 hybrid contribution 0.724 -0.383 -0.722 1.092 sum -17.200 -15.156 -1.315 22.962 Atomic orbital electron populations 1.21832 0.74495 1.04363 1.03358 1.48398 1.06402 1.03202 1.57360 1.77451 1.01334 1.06895 1.24174 1.22302 0.93185 0.93910 1.00461 1.19385 0.90678 0.96518 0.85259 1.45837 1.32463 1.53553 1.07536 1.18205 0.79762 0.78199 0.89260 1.90950 1.48631 1.52627 1.45213 1.18821 1.01959 1.09566 0.92572 1.20763 0.96340 0.96287 0.92228 1.20451 1.01847 1.06844 0.95873 1.20885 0.93611 0.94682 0.97787 1.21153 1.04451 1.07962 0.92175 1.19269 0.89992 0.89806 0.87899 1.84177 1.31575 1.58044 1.28406 1.21539 0.98342 1.32835 0.95181 0.88847 1.25380 0.98818 0.97522 0.94631 1.70140 1.35627 1.40930 0.99672 0.85668 0.79999 0.78922 0.78926 1.19000 1.20058 1.20036 1.21072 0.96235 0.94320 1.16815 1.20105 0.90799 0.88602 1.01769 1.20410 0.98134 0.85664 1.08529 1.23101 1.01883 0.99947 0.94845 1.23104 1.02021 0.99981 0.94572 0.90719 0.89707 0.89151 0.89644 0.90282 0.77227 0.87165 0.87353 0.87225 0.85069 0.91940 0.83434 0.86833 0.87807 0.88049 0.88027 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.22 59.85 0.67 1.35 16 2 N -0.37 -4.20 4.01 -63.88 -0.26 -4.45 16 3 N -0.28 -4.03 12.58 33.67 0.42 -3.61 16 4 C 0.07 0.97 6.59 -82.40 -0.54 0.42 16 5 C 0.21 3.36 6.23 -5.19 -0.03 3.33 16 6 N -0.74 -13.00 5.50 -62.53 -0.34 -13.34 16 7 C 0.56 12.68 7.76 -12.47 -0.10 12.59 16 8 O -0.50 -13.97 15.17 -16.56 -0.25 -14.22 16 9 C -0.22 -5.03 5.89 -104.81 -0.62 -5.65 16 10 C -0.04 -0.67 9.53 -39.20 -0.37 -1.05 16 11 C -0.23 -3.94 10.02 -39.61 -0.40 -4.33 16 12 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 13 C -0.24 -5.23 9.16 -39.44 -0.36 -5.59 16 14 C 0.19 4.82 6.66 -38.60 -0.26 4.56 16 15 O -0.12 -3.71 7.84 -21.05 -0.16 -3.88 16 16 C -0.40 -11.55 9.49 30.90 0.29 -11.26 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 19 N -0.83 -25.37 13.67 55.48 0.76 -24.62 16 20 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.25 -3.09 9.74 -40.01 -0.39 -3.48 16 25 C 0.11 1.20 6.62 -82.26 -0.54 0.65 16 26 C -0.11 -0.76 5.97 -91.77 -0.55 -1.31 16 27 C -0.16 -0.97 10.05 -26.70 -0.27 -1.24 16 28 C -0.16 -0.98 10.05 -26.70 -0.27 -1.24 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.35 7.22 -51.93 -0.38 -0.02 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.39 6.01 6.49 -40.82 -0.27 5.75 16 35 H 0.11 1.61 6.40 -52.48 -0.34 1.27 16 36 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 0.60 7.24 -51.93 -0.38 0.22 16 42 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.10 0.73 7.95 -51.93 -0.41 0.31 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -37.00 385.57 -8.96 -45.96 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.69 Total: 8.99 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -4.22 Total: -12.41 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.58 Total: -46.02 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.42 Total: -18.10 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.00 -8.96 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885915113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.182 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds