Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46823 * 124.33526 * 2 1 4 4 C 1.54474 * 105.44388 * 196.99863 * 3 2 1 5 5 H 1.08996 * 110.97073 * 92.77111 * 4 3 2 6 6 C 1.53007 * 110.96983 * 216.49199 * 4 3 2 7 7 C 1.50698 * 109.47312 * 181.91502 * 6 4 3 8 8 N 1.29943 * 126.29143 * 89.97103 * 7 6 4 9 9 O 1.21307 * 110.25374 * 180.02562 * 8 7 6 10 10 C 1.33647 * 109.80861 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55022 * 179.73738 * 10 9 8 12 12 C 1.50705 * 109.47271 * 270.02939 * 11 10 9 13 13 C 1.37633 * 120.12463 * 264.99994 * 12 11 10 14 14 C 1.38616 * 120.24816 * 179.97438 * 13 12 11 15 15 C 1.38660 * 120.50142 * 0.02580 * 14 13 12 16 16 C 1.37592 * 120.24558 * 359.97190 * 15 14 13 17 17 C 1.40693 * 120.12873 * 84.72066 * 12 11 10 18 18 C 1.41398 * 120.24513 * 0.02562 * 17 12 11 19 19 H 1.08004 * 119.99829 * 25.48056 * 18 17 12 20 20 C 1.39937 * 120.00178 * 205.47561 * 18 17 12 21 21 N 1.30826 * 120.00324 * 14.98673 * 20 18 17 22 22 Si 1.86808 * 120.00174 * 194.98734 * 20 18 17 23 23 H 1.48499 * 109.47194 * 94.96944 * 22 20 18 24 24 H 1.48500 * 109.46926 * 214.96715 * 22 20 18 25 25 H 1.48495 * 109.46872 * 334.96434 * 22 20 18 26 26 N 1.31128 * 106.89660 * 0.02562 * 10 9 8 27 27 C 1.54625 * 101.80042 * 334.62606 * 4 3 2 28 28 C 1.34422 * 124.34872 * 180.02562 * 2 1 3 29 29 O 1.21271 * 124.94018 * 359.55564 * 28 2 1 30 30 H 1.08995 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.93778 * 1 2 3 32 32 H 1.09004 * 109.46819 * 59.93349 * 1 2 3 33 33 H 1.08998 * 110.23812 * 78.01813 * 3 2 1 34 34 H 1.09002 * 110.28480 * 316.00018 * 3 2 1 35 35 H 1.08998 * 109.47239 * 61.91350 * 6 4 3 36 36 H 1.09000 * 109.46842 * 301.90734 * 6 4 3 37 37 H 1.09001 * 109.47041 * 30.02746 * 11 10 9 38 38 H 1.08997 * 109.47193 * 150.02579 * 11 10 9 39 39 H 1.08007 * 119.87891 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.75269 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.87936 * 179.97438 * 15 14 13 42 42 H 1.08003 * 120.12909 * 180.02562 * 16 15 14 43 43 H 0.96994 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.48209 * 143.45633 * 27 4 3 45 45 H 1.08993 * 110.49123 * 265.96625 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7009 0.7489 -0.4353 5 1 3.8275 0.8458 -1.5136 6 6 4.7880 1.5237 0.3124 7 6 6.1444 1.0791 -0.1709 8 7 6.8162 1.5936 -1.1571 9 8 7.8719 1.0121 -1.2947 10 6 7.9771 0.0423 -0.3811 11 6 9.1308 -0.9129 -0.2151 12 6 8.8908 -2.1413 -1.0546 13 6 8.3138 -3.2585 -0.4950 14 6 8.0914 -4.3895 -1.2649 15 6 8.4469 -4.4097 -2.6050 16 6 9.0250 -3.3043 -3.1854 17 6 9.2502 -2.1483 -2.4148 18 6 9.8387 -1.0045 -3.0019 19 1 10.3839 -0.3026 -2.3883 20 6 9.7149 -0.7821 -4.3779 21 7 8.8283 -1.4490 -5.0713 22 14 10.8155 0.4673 -5.2250 23 1 11.9966 -0.2240 -5.8016 24 1 10.0570 1.1398 -6.3102 25 1 11.2677 1.4791 -4.2366 26 7 6.8819 0.0767 0.3392 27 6 3.6898 -0.7378 -0.0106 28 6 2.2235 -1.1098 -0.0005 29 8 1.7946 -2.2441 0.0067 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 2.3305 1.6435 1.0004 34 1 1.8990 1.9393 -0.7102 35 1 4.7019 1.3303 1.3816 36 1 4.6676 2.5908 0.1252 37 1 10.0529 -0.4281 -0.5359 38 1 9.2169 -1.2001 0.8328 39 1 8.0325 -3.2537 0.5478 40 1 7.6378 -5.2616 -0.8176 41 1 8.2694 -5.2965 -3.1953 42 1 9.3008 -3.3219 -4.2295 43 1 8.7427 -1.2951 -6.0251 44 1 4.2326 -1.3454 -0.7347 45 1 4.1216 -0.8539 0.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897130813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = 27.849467 kcal Electronic energy + Delta-G solvation = -29487.474756 eV Core-core repulsion = 25471.770055 eV Total energy + Delta-G solvation = -4015.704701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.33431 -41.51816 -39.61105 -38.12691 -36.81506 -35.53474 -35.34439 -34.18697 -32.23713 -31.33676 -30.18158 -28.41323 -28.33937 -26.89519 -26.71288 -24.36394 -23.19239 -22.78132 -21.86518 -21.13616 -20.63041 -19.09555 -18.83666 -18.35545 -17.76700 -17.33878 -17.23584 -16.45818 -16.32248 -15.89912 -15.67535 -15.45866 -15.41445 -14.99390 -14.69855 -14.38981 -14.26311 -14.01914 -13.91147 -13.63219 -13.33580 -13.30513 -13.21147 -13.05288 -12.92898 -12.78942 -12.67782 -12.51761 -12.31621 -12.20391 -12.10473 -11.98177 -11.85256 -11.42273 -11.27412 -11.04609 -10.98457 -10.62306 -9.77369 -9.29643 -9.25295 -8.59945 -6.30840 0.31028 0.93333 1.09783 1.40413 1.40893 1.42330 1.52496 1.55308 2.01915 2.15577 2.22371 2.76406 2.82393 3.15887 3.28049 3.49997 3.64435 3.74404 3.91634 4.15420 4.31875 4.34073 4.38000 4.45026 4.48893 4.54591 4.59057 4.60491 4.68808 4.70036 4.76576 4.82884 4.84842 4.86949 4.93196 5.07099 5.08473 5.15665 5.26340 5.36261 5.50810 5.51080 5.74654 5.97118 6.01687 6.12351 6.21301 6.38348 6.72272 6.96158 7.03364 7.06619 7.33662 8.35698 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003489 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.769723 B = 8023.087959 C = 8805.874452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.117 3.883 4 C -0.089 4.089 5 H 0.077 0.923 6 C -0.008 4.008 7 C 0.165 3.835 8 N -0.417 5.417 9 O 0.059 5.941 10 C 0.217 3.783 11 C 0.039 3.961 12 C -0.215 4.215 13 C -0.073 4.073 14 C -0.248 4.248 15 C -0.110 4.110 16 C -0.192 4.192 17 C 0.097 3.903 18 C -0.474 4.474 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.828 5.828 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.250 1.250 26 N -0.502 5.502 27 C -0.144 4.144 28 C 0.510 3.490 29 O -0.586 6.586 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.284 0.716 44 H 0.065 0.935 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 10.671 10.323 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.354 5.354 3 C -0.004 4.004 4 C -0.109 4.109 5 H 0.096 0.904 6 C -0.046 4.046 7 C -0.108 4.108 8 N -0.131 5.131 9 O 0.007 5.993 10 C -0.002 4.002 11 C 0.000 4.000 12 C -0.218 4.218 13 C -0.091 4.091 14 C -0.267 4.267 15 C -0.129 4.129 16 C -0.212 4.212 17 C 0.094 3.906 18 C -0.503 4.503 19 H 0.109 0.891 20 C -0.176 4.176 21 N -0.454 5.454 22 Si 0.790 3.210 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.173 1.173 26 N -0.237 5.237 27 C -0.185 4.185 28 C 0.298 3.702 29 O -0.467 6.467 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.158 10.654 9.934 17.759 hybrid contribution 0.591 -0.361 -1.292 1.466 sum -9.567 10.293 8.642 16.497 Atomic orbital electron populations 1.21766 0.76541 1.03215 1.03818 1.48356 1.07640 1.07224 1.72219 1.22333 0.86992 0.86248 1.04869 1.22044 0.95286 0.92788 1.00795 0.90415 1.20123 0.81282 1.01665 1.01568 1.26396 1.01035 0.91835 0.91571 1.74548 0.96332 1.21256 1.20921 1.85336 1.30100 1.36785 1.47067 1.29299 0.97434 0.89819 0.83647 1.18953 0.90606 0.88812 1.01624 1.19431 1.11759 0.95321 0.95278 1.20744 0.96753 0.92823 0.98773 1.20720 1.11785 0.99632 0.94564 1.20987 0.99018 0.97480 0.95403 1.21372 1.06259 0.93447 1.00084 1.17781 0.89028 0.92539 0.91234 1.19837 1.30287 1.06886 0.93262 0.89124 1.26670 0.94767 0.97929 0.98257 1.69894 1.28215 1.37955 1.09385 0.85374 0.78648 0.78603 0.78380 1.18738 1.20376 1.17338 1.71872 1.03320 1.19621 1.28917 1.22338 0.93069 0.98103 1.04961 1.21220 0.90191 0.84349 0.74412 1.90676 1.79549 1.23383 1.53067 0.92075 0.89160 0.90030 0.87037 0.87164 0.85889 0.85571 0.87476 0.85629 0.86284 0.87155 0.88026 0.88134 0.90596 0.91641 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.14 127.77 1.42 2.69 16 2 N -0.62 -12.22 3.33 -842.76 -2.81 -15.03 16 3 C 0.12 1.44 6.92 86.82 0.60 2.04 16 4 C -0.09 -1.76 3.14 -9.74 -0.03 -1.79 16 5 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.01 -0.14 5.19 29.85 0.16 0.01 16 7 C 0.17 5.11 7.13 138.46 0.99 6.10 16 8 N -0.42 -15.44 12.16 -60.29 -0.73 -16.17 16 9 O 0.06 2.42 11.31 74.79 0.85 3.26 16 10 C 0.22 8.15 7.75 88.38 0.68 8.83 16 11 C 0.04 1.36 5.49 29.10 0.16 1.52 16 12 C -0.22 -9.36 5.17 -19.41 -0.10 -9.46 16 13 C -0.07 -3.03 9.66 22.22 0.21 -2.82 16 14 C -0.25 -10.76 10.05 22.46 0.23 -10.54 16 15 C -0.11 -5.19 10.02 22.22 0.22 -4.97 16 16 C -0.19 -9.98 8.69 22.73 0.20 -9.78 16 17 C 0.10 4.85 5.57 -21.29 -0.12 4.74 16 18 C -0.47 -23.35 8.47 23.46 0.20 -23.16 16 19 H 0.09 4.15 6.35 -2.91 -0.02 4.13 16 20 C 0.04 1.88 5.19 85.25 0.44 2.33 16 21 N -0.83 -43.23 10.87 21.82 0.24 -42.99 16 22 Si 0.97 37.59 29.59 68.60 2.03 39.62 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 26 N -0.50 -17.34 11.55 -303.17 -3.50 -20.84 16 27 C -0.14 -3.92 6.07 30.59 0.19 -3.74 16 28 C 0.51 14.96 8.03 87.90 0.71 15.67 16 29 O -0.59 -22.83 17.35 -3.00 -0.05 -22.88 16 30 H 0.06 1.17 7.53 -2.39 -0.02 1.15 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.72 7.89 -2.39 -0.02 0.70 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 1.71 8.01 -2.39 -0.02 1.69 16 36 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.11 3.58 6.49 -2.39 -0.02 3.56 16 38 H 0.13 3.58 8.05 -2.39 -0.02 3.56 16 39 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.10 5.52 6.15 -2.91 -0.02 5.51 16 43 H 0.28 13.65 8.30 -92.71 -0.77 12.89 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.12 3.01 7.80 -2.39 -0.02 2.99 16 Total: -1.00 -71.20 380.76 3.19 -68.01 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 1.02 Total: 29.36 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 6.15 Total: -22.34 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -6.81 Total: -95.03 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.79 Total: -19.62 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -71.20 3.19 -68.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897130813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.860 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds