Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03450 * 2 1 4 4 C 1.35315 * 107.74650 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03869 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47014 * 89.99942 * 5 4 3 7 7 C 1.53490 * 114.20530 * 184.99605 * 6 5 4 8 8 N 1.47070 * 87.98811 * 220.34684 * 7 6 5 9 9 C 1.34767 * 136.05999 * 207.08764 * 8 7 6 10 10 O 1.21598 * 120.00204 * 355.40513 * 9 8 7 11 11 C 1.47534 * 120.00381 * 175.40537 * 9 8 7 12 12 C 1.39666 * 120.19410 * 24.87630 * 11 9 8 13 13 C 1.37828 * 119.92007 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.32302 * 0.02562 * 13 12 11 15 15 C 1.38026 * 120.40097 * 359.97438 * 14 13 12 16 16 C 1.38838 * 120.07408 * 359.97438 * 15 14 13 17 17 O 1.35519 * 120.16221 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00048 * 5.72582 * 17 16 15 19 19 H 1.08000 * 120.00095 * 5.43058 * 18 17 16 20 20 C 1.38691 * 119.99913 * 185.43129 * 18 17 16 21 21 N 1.31524 * 120.00026 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00074 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47357 * 90.00054 * 22 20 18 24 24 H 1.48504 * 109.47207 * 209.99885 * 22 20 18 25 25 H 1.48492 * 109.47288 * 329.99899 * 22 20 18 26 26 C 1.47069 * 87.87941 * 27.34464 * 8 7 6 27 27 C 1.39863 * 107.91904 * 0.26179 * 4 3 2 28 28 N 1.30839 * 108.20667 * 359.55647 * 27 4 3 29 29 H 1.08993 * 109.47393 * 89.99954 * 1 2 3 30 30 H 1.09007 * 109.46687 * 209.99776 * 1 2 3 31 31 H 1.09001 * 109.46972 * 329.99379 * 1 2 3 32 32 H 1.07998 * 126.12865 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47349 * 330.00257 * 5 4 3 34 34 H 1.08999 * 109.47165 * 209.99681 * 5 4 3 35 35 H 1.08997 * 113.27882 * 318.06903 * 6 5 4 36 36 H 1.09001 * 113.47014 * 105.56648 * 7 6 5 37 37 H 1.09003 * 113.47047 * 335.12916 * 7 6 5 38 38 H 1.07997 * 120.04220 * 359.97438 * 12 11 9 39 39 H 1.07999 * 119.83756 * 180.02562 * 13 12 11 40 40 H 1.07994 * 119.80092 * 179.70434 * 14 13 12 41 41 H 1.08002 * 119.96262 * 179.97438 * 15 14 13 42 42 H 0.97002 * 119.99809 * 180.02562 * 21 20 18 43 43 H 1.09004 * 113.46846 * 87.44579 * 26 8 7 44 44 H 1.09007 * 113.46254 * 217.87770 * 26 8 7 45 45 H 1.08002 * 125.89899 * 179.73579 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0002 6 6 5.1825 1.8419 1.4424 7 6 6.3500 2.8300 1.5713 8 7 6.8768 1.9861 2.6545 9 6 7.6460 2.1746 3.7449 10 8 8.1419 3.2642 3.9582 11 6 7.8865 1.0590 4.6799 12 6 7.7930 -0.2620 4.2362 13 6 8.0194 -1.2998 5.1144 14 6 8.3391 -1.0397 6.4375 15 6 8.4350 0.2607 6.8902 16 6 8.2114 1.3188 6.0196 17 8 8.3046 2.5962 6.4623 18 6 8.7335 2.7757 7.7277 19 1 9.0680 1.9296 8.3096 20 6 8.7452 4.0469 8.2822 21 7 9.1631 4.2219 9.5169 22 14 8.1673 5.5104 7.2754 23 1 6.7091 5.7057 7.4777 24 1 8.8950 6.7294 7.7112 25 1 8.4383 5.2598 5.8371 26 6 6.2001 0.8446 2.0203 27 6 3.5347 -0.7319 -0.0070 28 7 2.2892 -1.1327 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.9281 2.1193 0.0004 33 1 4.5440 2.4807 -0.5133 34 1 5.5820 1.0348 -0.5146 35 1 4.3386 2.0592 2.0972 36 1 6.0444 3.8221 1.9036 37 1 6.9932 2.8591 0.6918 38 1 7.5437 -0.4700 3.2062 39 1 7.9471 -2.3208 4.7698 40 1 8.5101 -1.8594 7.1195 41 1 8.6843 0.4553 7.9229 42 1 9.1709 5.1109 9.9049 43 1 6.8038 0.3502 1.2592 44 1 5.7667 0.1452 2.7353 45 1 4.4054 -1.3708 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899014352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = 92.615438 kcal Electronic energy + Delta-G solvation = -28695.840807 eV Core-core repulsion = 24682.944569 eV Total energy + Delta-G solvation = -4012.896238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48288 -40.27977 -39.10295 -37.15274 -36.48346 -34.03770 -32.44432 -32.38725 -30.91067 -29.39226 -29.17855 -27.54872 -26.00768 -25.58484 -25.11941 -22.93938 -21.41054 -21.31367 -20.92931 -20.14558 -19.11234 -17.94799 -17.31577 -17.12255 -16.48391 -15.83739 -15.63745 -15.43981 -14.75719 -14.65478 -14.38220 -14.24847 -14.12479 -13.78893 -13.66778 -13.54072 -13.21112 -13.04066 -12.89554 -12.66798 -12.55207 -12.33132 -12.25299 -12.15654 -11.64954 -11.45801 -11.36811 -11.20427 -10.97056 -10.75614 -10.74347 -10.25545 -10.05301 -9.68370 -9.60116 -9.10283 -8.87778 -8.62463 -8.39571 -8.28695 -7.45387 -6.45669 -4.10459 1.62728 1.63949 2.21161 2.25453 2.54793 3.17950 3.30323 3.34161 3.51795 3.65962 4.12110 4.31434 4.35224 4.47153 4.56353 4.75109 4.75559 4.78199 4.84916 4.89937 5.01877 5.08047 5.13212 5.19072 5.27741 5.42821 5.45320 5.50136 5.55604 5.58120 5.63116 5.69562 5.75676 5.85621 5.96415 6.09129 6.20068 6.25667 6.40906 6.42194 6.62291 6.72839 6.89278 7.05969 7.18259 7.44227 7.50693 7.70767 7.96725 8.12169 8.83278 8.90412 9.52764 10.59892 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.002726 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.290057 B =10268.678324 C =11148.348931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.055 3.945 4 C -0.231 4.231 5 C -0.027 4.027 6 C -0.119 4.119 7 C 0.108 3.892 8 N -0.652 5.652 9 C 0.593 3.407 10 O -0.518 6.518 11 C -0.217 4.217 12 C -0.044 4.044 13 C -0.221 4.221 14 C -0.052 4.052 15 C -0.227 4.227 16 C 0.200 3.800 17 O -0.175 6.175 18 C -0.393 4.393 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.871 5.871 22 Si 0.891 3.109 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.235 1.235 26 C 0.103 3.897 27 C 0.055 3.945 28 N -0.300 5.300 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.138 0.862 42 H 0.281 0.719 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -8.675 -20.938 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.091 4.091 4 C -0.242 4.242 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.015 4.015 8 N -0.390 5.390 9 C 0.386 3.614 10 O -0.393 6.393 11 C -0.222 4.222 12 C -0.063 4.063 13 C -0.240 4.240 14 C -0.071 4.071 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.507 5.507 22 Si 0.716 3.284 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.157 1.157 26 C -0.020 4.020 27 C -0.132 4.132 28 N -0.121 5.121 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.189 0.811 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.216 -8.614 -20.485 26.932 hybrid contribution 0.305 1.174 -0.005 1.213 sum -14.911 -7.440 -20.489 26.410 Atomic orbital electron populations 1.21840 0.74347 1.04542 1.03220 1.48451 1.06601 1.03939 1.57174 1.22353 0.90966 0.93342 1.02447 1.20036 0.94355 0.93975 1.15874 1.19777 0.93912 0.98051 0.94908 1.23124 0.96661 0.96994 0.97028 1.22915 0.92421 0.96488 0.89635 1.49450 1.52950 1.12484 1.24111 1.17797 0.76444 0.88196 0.78953 1.90855 1.48429 1.26423 1.73616 1.18739 1.18400 0.92920 0.92112 1.20980 0.95695 0.90909 0.98699 1.20558 1.11152 0.97969 0.94293 1.20966 0.95001 0.95836 0.95257 1.21269 1.10047 0.92014 1.01256 1.19013 0.90761 0.84931 0.90987 1.83732 1.71618 1.21287 1.30918 1.20883 1.42296 0.97063 0.86603 0.87448 1.24471 0.95387 0.98255 0.95253 1.69638 1.43790 1.24541 1.12699 0.86328 0.78795 0.79896 0.83417 1.20087 1.20870 1.15715 1.23174 0.91637 0.91496 0.95724 1.23823 0.95144 0.94636 0.99552 1.77367 1.01836 1.08311 1.24576 0.90875 0.89334 0.89502 0.81077 0.90723 0.90547 0.87993 0.90802 0.90285 0.86314 0.86999 0.86840 0.84403 0.90864 0.90009 0.90257 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.23 4.01 -68.16 -0.27 -3.50 16 3 C 0.05 0.41 11.40 -17.22 -0.20 0.22 16 4 C -0.23 -1.85 5.34 -105.05 -0.56 -2.41 16 5 C -0.03 -0.18 5.61 -27.88 -0.16 -0.34 16 6 C -0.12 -1.09 4.01 -89.97 -0.36 -1.45 16 7 C 0.11 1.29 8.19 -8.52 -0.07 1.22 16 8 N -0.65 -10.38 3.68 -186.31 -0.68 -11.07 16 9 C 0.59 12.83 7.78 -12.47 -0.10 12.73 16 10 O -0.52 -13.63 16.36 -14.86 -0.24 -13.87 16 11 C -0.22 -4.64 5.86 -104.81 -0.61 -5.25 16 12 C -0.04 -0.75 8.75 -39.20 -0.34 -1.09 16 13 C -0.22 -3.56 10.03 -39.61 -0.40 -3.96 16 14 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 15 C -0.23 -4.92 9.12 -39.44 -0.36 -5.28 16 16 C 0.20 4.88 6.63 -38.60 -0.26 4.63 16 17 O -0.17 -4.93 6.97 -19.34 -0.13 -5.06 16 18 C -0.39 -11.46 9.90 30.90 0.31 -11.15 16 19 H 0.11 3.12 5.53 -52.49 -0.29 2.83 16 20 C 0.07 2.09 5.49 -17.52 -0.10 1.99 16 21 N -0.87 -25.61 13.96 55.48 0.77 -24.84 16 22 Si 0.89 23.18 28.62 -169.99 -4.86 18.32 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.23 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.10 1.12 5.79 -8.38 -0.05 1.07 16 27 C 0.05 0.49 11.96 -17.37 -0.21 0.28 16 28 N -0.30 -3.21 12.58 30.62 0.39 -2.83 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.44 7.80 -51.93 -0.40 0.03 16 35 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.12 1.61 5.34 -52.49 -0.28 1.33 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.14 3.09 5.71 -52.49 -0.30 2.79 16 42 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 44 H 0.08 0.89 7.05 -51.92 -0.37 0.52 16 45 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -37.50 381.63 -8.29 -45.79 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.83 Total: 0.26 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.17 Total: -8.96 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.20 Total: -42.24 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.38 Total: -18.93 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.86 Total: 18.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.50 -8.29 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899014352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.407 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds