Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34129 * 125.70999 * 2 1 4 4 C 1.38449 * 107.37457 * 180.26494 * 3 2 1 5 5 C 1.46671 * 126.48046 * 179.73633 * 4 3 2 6 6 O 1.21317 * 119.99349 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00348 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47057 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46772 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00290 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99522 * 179.97438 * 9 8 7 12 12 C 1.39927 * 119.99901 * 175.37555 * 11 9 8 13 13 C 1.38864 * 120.07406 * 214.80861 * 12 11 9 14 14 C 1.38121 * 119.92932 * 179.74861 * 13 12 11 15 15 C 1.38281 * 120.07005 * 0.53113 * 14 13 12 16 16 C 1.50696 * 119.92664 * 179.72375 * 15 14 13 17 17 C 1.50696 * 109.47226 * 270.01968 * 16 15 14 18 18 H 1.08000 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00236 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99995 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99915 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47084 * 90.00055 * 21 19 17 23 23 H 1.48500 * 109.47283 * 210.00132 * 21 19 17 24 24 H 1.48493 * 109.47212 * 329.99999 * 21 19 17 25 25 C 1.38280 * 120.14103 * 359.74366 * 15 14 13 26 26 C 1.38115 * 120.06940 * 359.97438 * 25 15 14 27 27 C 1.41555 * 107.04673 * 359.61583 * 4 3 2 28 28 N 1.30372 * 107.98325 * 0.38554 * 27 4 3 29 29 H 1.08995 * 109.47319 * 90.00278 * 1 2 3 30 30 H 1.09002 * 109.47281 * 210.00682 * 1 2 3 31 31 H 1.09001 * 109.46687 * 330.00517 * 1 2 3 32 32 H 1.07999 * 126.31159 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.46825 * 299.99420 * 7 5 4 34 34 H 1.08995 * 109.47341 * 59.99319 * 7 5 4 35 35 H 1.08993 * 109.47156 * 299.99467 * 8 7 5 36 36 H 1.09003 * 109.47114 * 59.99969 * 8 7 5 37 37 H 0.97000 * 120.00149 * 355.37930 * 11 9 8 38 38 H 1.08000 * 120.03748 * 0.02881 * 13 12 11 39 39 H 1.08001 * 119.96330 * 180.27809 * 14 13 12 40 40 H 1.08997 * 109.47435 * 30.02175 * 16 15 14 41 41 H 1.09001 * 109.46563 * 150.02000 * 16 15 14 42 42 H 0.97012 * 119.99537 * 179.97438 * 20 19 17 43 43 H 1.07996 * 119.96818 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.03409 * 180.02562 * 26 25 15 45 45 H 1.08000 * 126.01201 * 180.11646 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2478 1.0891 0.0000 4 6 3.5620 0.6536 -0.0061 5 6 4.7608 1.4987 -0.0138 6 8 4.6510 2.7069 -0.0157 7 6 6.1286 0.8663 -0.0192 8 6 7.1968 1.9617 -0.0274 9 6 8.5647 1.3292 -0.0322 10 8 8.6744 0.1213 -0.0299 11 7 9.6661 2.1059 -0.0402 12 6 10.9344 1.5223 0.0530 13 6 11.9515 2.1735 0.7384 14 6 13.2008 1.5923 0.8330 15 6 13.4425 0.3683 0.2367 16 6 14.8086 -0.2600 0.3366 17 6 15.6551 0.1908 -0.8258 18 1 15.2450 0.8652 -1.5629 19 6 16.9531 -0.2577 -0.9482 20 7 17.6920 0.1361 -1.9624 21 14 17.6626 -1.4236 0.3272 22 1 17.4020 -2.8263 -0.0850 23 1 19.1272 -1.2042 0.4380 24 1 17.0229 -1.1672 1.6425 25 6 12.4335 -0.2802 -0.4514 26 6 11.1804 0.2930 -0.5447 27 6 3.5302 -0.7616 -0.0007 28 7 2.2815 -1.1362 -0.0004 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.9145 2.1164 -0.0004 33 1 6.2472 0.2493 0.8716 34 1 6.2384 0.2456 -0.9084 35 1 7.0782 2.5783 -0.9183 36 1 7.0872 2.5828 0.8617 37 1 9.5796 3.0695 -0.1105 38 1 11.7645 3.1314 1.2010 39 1 13.9910 2.0962 1.3698 40 1 15.2814 0.0449 1.2702 41 1 14.7116 -1.3455 0.3161 42 1 18.6054 -0.1792 -2.0483 43 1 12.6254 -1.2358 -0.9164 44 1 10.3926 -0.2141 -1.0819 45 1 4.3894 -1.4161 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928400860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 0.218983 kcal Electronic energy + Delta-G solvation = -26904.175255 eV Core-core repulsion = 22887.272406 eV Total energy + Delta-G solvation = -4016.902849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32277 -41.50384 -40.03956 -39.40440 -36.27053 -34.90872 -34.51049 -33.82262 -32.48754 -31.74925 -31.44353 -29.21597 -28.30037 -26.46680 -24.67204 -23.80283 -23.32152 -22.09514 -21.74084 -21.12191 -20.30214 -18.95280 -18.80297 -18.36424 -17.67361 -17.08303 -16.71038 -16.52738 -16.22150 -15.96262 -15.90473 -15.68135 -15.42777 -15.22146 -15.03936 -14.62881 -14.32764 -14.18473 -14.01501 -13.79854 -13.76107 -13.50107 -13.46886 -13.41133 -13.17982 -12.83636 -12.49293 -12.22229 -12.09267 -11.96789 -11.81734 -11.80110 -11.59801 -11.04285 -10.77733 -10.71998 -10.66400 -10.62408 -9.74068 -9.72006 -8.82295 -8.28386 -6.33277 0.31688 0.45464 0.59352 1.03183 1.38179 1.39187 1.47551 1.51531 1.65060 2.08926 2.19315 2.36826 2.98929 3.06031 3.12038 3.64711 3.78500 3.83023 4.00903 4.14364 4.17374 4.18001 4.20700 4.33663 4.36269 4.40287 4.58531 4.62028 4.65880 4.67058 4.68747 4.78789 4.93732 4.95619 5.06404 5.08196 5.09908 5.29776 5.43783 5.44817 5.46872 5.57952 5.65436 5.85683 6.02563 6.18586 6.30988 6.49419 6.51285 6.70160 6.72897 7.20598 7.30242 8.88046 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.001546 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.795914 B =18103.798713 C =18660.466524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.363 5.363 3 C 0.133 3.867 4 C -0.349 4.349 5 C 0.444 3.556 6 O -0.500 6.500 7 C -0.144 4.144 8 C -0.118 4.118 9 C 0.510 3.490 10 O -0.559 6.559 11 N -0.659 5.659 12 C 0.118 3.882 13 C -0.132 4.132 14 C -0.114 4.114 15 C -0.075 4.075 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.028 0.972 19 C 0.009 3.991 20 N -0.949 5.949 21 Si 0.950 3.050 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.245 1.245 25 C -0.121 4.121 26 C -0.126 4.126 27 C 0.094 3.906 28 N -0.336 5.336 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.212 0.788 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.427 0.573 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.267 0.733 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.343 5.089 7.265 38.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.140 5.140 3 C -0.021 4.021 4 C -0.361 4.361 5 C 0.325 3.675 6 O -0.379 6.379 7 C -0.182 4.182 8 C -0.158 4.158 9 C 0.300 3.700 10 O -0.437 6.437 11 N -0.306 5.306 12 C 0.024 3.976 13 C -0.152 4.152 14 C -0.133 4.133 15 C -0.076 4.076 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.047 0.953 19 C -0.188 4.188 20 N -0.590 5.590 21 Si 0.773 3.227 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.168 1.168 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.093 4.093 28 N -0.156 5.156 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.229 0.771 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.266 0.734 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -38.241 3.847 7.199 39.103 hybrid contribution 1.477 0.359 -0.168 1.530 sum -36.764 4.206 7.032 37.666 Atomic orbital electron populations 1.22403 0.71154 1.06636 1.05339 1.48845 1.08739 1.03384 1.53058 1.23697 0.90250 0.94801 0.93315 1.21026 0.94754 0.94614 1.25742 1.21420 0.89471 0.87339 0.69274 1.90524 1.89727 1.17288 1.40361 1.21692 0.90806 0.99063 1.06659 1.21423 0.87886 0.99257 1.07208 1.21410 0.87160 0.87064 0.74391 1.90710 1.87535 1.15994 1.49479 1.43392 1.02992 1.11702 1.72478 1.17679 0.85897 0.94850 0.99154 1.21075 0.92157 1.01793 1.00141 1.21024 0.97198 0.94704 1.00346 1.20185 0.95273 0.95695 0.96441 1.18643 0.90634 0.95920 0.96408 1.21181 0.97271 1.28413 1.08876 0.95329 1.25963 0.97181 0.97968 0.97713 1.70063 1.09626 1.46855 1.32424 0.85663 0.77501 0.79116 0.80440 1.19276 1.20701 1.16832 1.21000 0.92751 1.00616 0.99615 1.21179 0.96510 0.96499 1.00465 1.24598 0.95507 0.94362 0.94881 1.77157 1.02972 1.09231 1.26268 0.88880 0.88596 0.86120 0.77097 0.87122 0.87166 0.86598 0.86488 0.73408 0.82512 0.85305 0.94787 0.95635 0.92387 0.86769 0.85159 0.77288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.18 11.44 127.77 1.46 1.64 16 2 N -0.36 -4.08 3.97 -367.54 -1.46 -5.54 16 3 C 0.13 1.45 11.30 84.39 0.95 2.41 16 4 C -0.35 -4.99 6.11 -20.21 -0.12 -5.11 16 5 C 0.44 6.72 7.13 27.89 0.20 6.92 16 6 O -0.50 -9.66 16.53 -3.14 -0.05 -9.71 16 7 C -0.14 -1.97 4.47 29.85 0.13 -1.84 16 8 C -0.12 -1.62 4.99 29.85 0.15 -1.47 16 9 C 0.51 10.99 7.67 87.66 0.67 11.66 16 10 O -0.56 -16.46 13.42 -3.05 -0.04 -16.50 16 11 N -0.66 -13.97 5.34 -303.50 -1.62 -15.59 16 12 C 0.12 3.56 6.30 38.15 0.24 3.80 16 13 C -0.13 -3.89 9.97 22.39 0.22 -3.66 16 14 C -0.11 -4.21 9.69 22.25 0.22 -3.99 16 15 C -0.08 -3.26 5.07 -19.85 -0.10 -3.36 16 16 C 0.02 1.03 4.17 29.10 0.12 1.15 16 17 C -0.52 -30.66 9.65 25.60 0.25 -30.41 16 18 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 19 C 0.01 0.51 5.47 84.65 0.46 0.98 16 20 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 21 Si 0.95 44.51 27.47 68.60 1.88 46.39 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.24 -10.62 6.54 99.48 0.65 -9.96 16 25 C -0.12 -4.96 9.69 22.25 0.22 -4.74 16 26 C -0.13 -4.55 8.70 22.39 0.19 -4.36 16 27 C 0.09 1.36 11.55 85.73 0.99 2.35 16 28 N -0.34 -5.63 12.49 -56.13 -0.70 -6.33 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.11 1.47 8.10 -2.38 -0.02 1.45 16 34 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.12 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.12 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.43 5.71 8.82 -92.71 -0.82 4.89 16 38 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.03 1.59 7.14 -2.39 -0.02 1.58 16 41 H 0.03 1.21 7.51 -2.39 -0.02 1.20 16 42 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.13 4.65 6.22 -2.91 -0.02 4.63 16 45 H 0.21 2.06 8.04 -2.91 -0.02 2.04 16 Total: -1.00 -83.58 390.37 4.71 -78.87 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.15 Total: 16.25 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 6.26 Total: -28.04 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -3.48 Total: -87.26 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.09 Total: -26.21 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -83.58 4.71 -78.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.086 kcal (2) G-P(sol) polarization free energy of solvation -83.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds