Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46884 * 2 1 4 4 C 1.34780 * 120.00075 * 82.80495 * 3 2 1 5 5 O 1.21544 * 119.99984 * 183.65590 * 4 3 2 6 6 C 1.47931 * 119.99553 * 3.37780 * 4 3 2 7 7 C 1.38260 * 119.23634 * 173.53572 * 6 4 3 8 8 C 1.40701 * 118.64714 * 179.97438 * 7 6 4 9 9 C 1.40239 * 122.05170 * 179.97438 * 8 7 6 10 10 C 1.36316 * 119.47830 * 180.02562 * 9 8 7 11 11 C 1.39248 * 120.94279 * 359.97438 * 10 9 8 12 12 C 1.36362 * 121.06293 * 359.97438 * 11 10 9 13 13 C 1.40042 * 119.58859 * 0.02562 * 12 11 10 14 14 C 1.41350 * 121.85766 * 179.97438 * 13 12 11 15 15 O 1.35494 * 119.95303 * 0.03995 * 14 13 12 16 16 N 1.31386 * 120.09673 * 179.76475 * 14 13 12 17 17 C 1.46499 * 120.00002 * 262.80110 * 3 2 1 18 18 C 1.53949 * 113.73934 * 223.07905 * 17 3 2 19 19 N 1.47821 * 86.03303 * 222.08264 * 18 17 3 20 20 C 1.36936 * 134.45407 * 204.63874 * 19 18 17 21 21 H 1.07997 * 119.99676 * 179.87142 * 20 19 18 22 22 C 1.38809 * 120.00356 * 359.87407 * 20 19 18 23 23 N 1.31619 * 119.99993 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00308 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47110 * 89.99953 * 24 22 20 26 26 H 1.48502 * 109.47251 * 210.00178 * 24 22 20 27 27 H 1.48500 * 109.46799 * 329.99740 * 24 22 20 28 28 C 1.47576 * 91.05211 * 24.55221 * 19 18 17 29 29 H 1.09002 * 109.47338 * 60.00199 * 1 2 3 30 30 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47050 * 300.00040 * 1 2 3 32 32 H 1.09002 * 109.47718 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.47338 * 119.99801 * 2 1 3 34 34 H 1.07998 * 120.67969 * 359.95479 * 7 6 4 35 35 H 1.07995 * 120.25689 * 0.04426 * 9 8 7 36 36 H 1.07996 * 119.52576 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.46931 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.20567 * 179.97438 * 12 11 10 39 39 H 0.96704 * 113.99763 * 89.99919 * 15 14 13 40 40 H 1.08994 * 112.94568 * 354.66979 * 17 3 2 41 41 H 1.08995 * 113.77199 * 336.34747 * 18 17 3 42 42 H 1.08997 * 113.76815 * 107.74995 * 18 17 3 43 43 H 0.96996 * 120.00328 * 179.97438 * 23 22 20 44 44 H 1.08999 * 113.77082 * 221.15316 * 28 19 18 45 45 H 1.08998 * 113.77213 * 89.75070 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1050 2.0654 1.1580 5 8 2.4466 3.2318 1.1507 6 6 1.7786 1.3982 2.4374 7 6 2.0010 2.0699 3.6252 8 6 1.6856 1.4239 4.8347 9 6 1.8827 2.0381 6.0799 10 6 1.5592 1.3634 7.2194 11 6 1.0357 0.0743 7.1640 12 6 0.8306 -0.5512 5.9697 13 6 1.1514 0.1112 4.7782 14 6 0.9590 -0.4918 3.5144 15 8 0.4504 -1.7450 3.4331 16 7 1.2677 0.1632 2.4180 17 6 2.4123 2.0189 -1.2587 18 6 3.7156 2.8323 -1.1600 19 7 3.0229 3.8483 -1.9803 20 6 3.4363 4.8408 -2.8284 21 1 2.7081 5.4663 -3.3232 22 6 4.7912 5.0428 -3.0522 23 7 5.6787 4.2808 -2.4488 24 14 5.3552 6.3962 -4.2097 25 1 5.5476 7.6539 -3.4442 26 1 6.6384 6.0018 -4.8446 27 1 4.3278 6.6085 -5.2607 28 6 1.7075 3.3624 -1.5202 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.4089 3.0699 3.6248 35 1 2.2874 3.0378 6.1356 36 1 1.7110 1.8355 8.1787 37 1 0.7872 -0.4382 8.0816 38 1 0.4242 -1.5514 5.9429 39 1 -0.5144 -1.7749 3.3745 40 1 2.3844 1.3361 -2.1079 41 1 3.9486 3.1679 -0.1495 42 1 4.5638 2.3655 -1.6608 43 1 6.6255 4.4217 -2.6055 44 1 0.9555 3.3179 -2.3079 45 1 1.3494 3.8540 -0.6156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950505075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 49.584578 kcal Electronic energy + Delta-G solvation = -29763.481144 eV Core-core repulsion = 25748.718949 eV Total energy + Delta-G solvation = -4014.762196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34609 -41.25195 -38.97699 -38.77661 -37.51320 -36.55642 -34.16340 -33.27871 -32.22242 -31.20129 -30.63412 -29.20870 -26.59935 -26.40621 -25.04279 -24.69402 -24.07960 -23.13590 -22.04620 -20.78731 -19.42950 -18.80126 -18.72903 -18.44500 -17.78681 -17.04104 -16.93851 -16.58447 -16.44411 -16.09958 -15.88075 -15.49569 -15.10282 -15.02908 -14.66106 -14.56672 -14.30343 -14.09329 -14.05879 -13.66424 -13.39183 -13.15562 -12.97036 -12.85896 -12.80614 -12.73846 -12.63474 -12.46379 -12.14618 -12.02076 -11.91005 -11.71715 -11.49921 -11.27751 -11.07991 -10.73784 -10.20451 -10.01646 -9.51221 -9.02744 -8.90278 -7.90598 -5.24880 -0.87063 -0.36776 0.78624 1.38031 1.42100 1.46558 1.55045 1.89932 2.24085 2.42474 2.49628 2.95746 3.23316 3.28743 3.49332 3.54291 3.64801 3.82957 3.84195 3.95717 4.19271 4.25930 4.27119 4.29277 4.42926 4.54449 4.63338 4.65794 4.67971 4.80078 4.81761 4.87235 4.98989 5.01903 5.02469 5.21741 5.22671 5.33353 5.39363 5.40137 5.46029 5.47479 5.56812 5.85243 5.88330 5.91761 6.41414 6.57173 6.73748 6.89529 7.17674 7.58447 8.56386 9.26852 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.002816 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.712102 B = 9942.246141 C =11013.186819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 N -0.581 5.581 4 C 0.554 3.446 5 O -0.560 6.560 6 C 0.063 3.937 7 C -0.100 4.100 8 C -0.038 4.038 9 C -0.120 4.120 10 C -0.088 4.088 11 C -0.106 4.106 12 C -0.085 4.085 13 C -0.118 4.118 14 C 0.354 3.646 15 O -0.469 6.469 16 N -0.481 5.481 17 C 0.120 3.880 18 C 0.156 3.844 19 N -0.631 5.631 20 C -0.235 4.235 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.986 3.014 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.263 1.263 28 C 0.116 3.884 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.425 0.575 40 H 0.127 0.873 41 H 0.025 0.975 42 H 0.037 0.963 43 H 0.248 0.752 44 H 0.058 0.942 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 -16.695 22.314 31.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 N -0.311 5.311 4 C 0.342 3.658 5 O -0.439 6.439 6 C -0.061 4.061 7 C -0.122 4.122 8 C -0.043 4.043 9 C -0.138 4.138 10 C -0.107 4.107 11 C -0.124 4.124 12 C -0.104 4.104 13 C -0.122 4.122 14 C 0.159 3.841 15 O -0.280 6.280 16 N -0.203 5.203 17 C 0.016 3.984 18 C 0.029 3.971 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.814 3.186 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.188 1.188 28 C -0.010 4.010 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.288 0.712 40 H 0.145 0.855 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.603 -16.408 21.251 30.563 hybrid contribution 0.497 1.686 -0.144 1.764 sum -14.106 -14.722 21.106 29.346 Atomic orbital electron populations 1.21896 0.94590 1.02654 1.00404 1.22351 0.95876 0.79948 1.04373 1.48017 1.62337 1.15434 1.05314 1.18366 0.77827 0.85562 0.84020 1.90841 1.48582 1.17496 1.86951 1.20253 1.01979 0.90854 0.92971 1.22204 0.97571 1.01034 0.91354 1.18218 0.98258 0.93717 0.94066 1.21288 1.00525 1.01219 0.90766 1.21474 0.95180 0.94850 0.99190 1.21491 0.96915 0.94798 0.99192 1.21275 0.98086 1.00829 0.90256 1.19275 1.02907 0.94324 0.95687 1.19468 0.93060 0.85023 0.86595 1.84694 1.29203 1.18927 1.95147 1.67453 1.14099 1.07040 1.31703 1.23533 0.95812 0.93137 0.85919 1.22507 0.93780 0.87443 0.93339 1.46092 1.02879 1.37920 1.48884 1.19448 0.91739 1.08393 1.16800 0.89786 1.25747 0.95600 1.02380 1.02657 1.70061 1.00276 1.42384 1.47660 0.84967 0.77528 0.77941 0.78198 1.21618 1.21602 1.18793 1.22940 0.89439 0.92102 0.96505 0.94161 0.89516 0.93656 0.90574 0.86658 0.84137 0.83828 0.82232 0.81800 0.81972 0.71196 0.85515 0.95711 0.94456 0.94300 0.92438 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.56 71.98 0.69 -2.39 16 2 C 0.10 2.60 5.74 86.38 0.50 3.09 16 3 N -0.58 -21.26 2.75 -806.78 -2.22 -23.48 16 4 C 0.55 22.04 7.01 86.81 0.61 22.65 16 5 O -0.56 -27.34 11.99 -3.86 -0.05 -27.38 16 6 C 0.06 2.00 6.52 41.44 0.27 2.27 16 7 C -0.10 -2.86 9.40 22.88 0.22 -2.65 16 8 C -0.04 -0.83 5.74 -21.30 -0.12 -0.95 16 9 C -0.12 -1.93 9.81 22.31 0.22 -1.71 16 10 C -0.09 -0.89 9.95 22.06 0.22 -0.67 16 11 C -0.11 -0.87 9.95 22.07 0.22 -0.65 16 12 C -0.08 -0.94 9.58 22.27 0.21 -0.73 16 13 C -0.12 -2.17 5.76 -21.19 -0.12 -2.29 16 14 C 0.35 6.88 7.80 85.53 0.67 7.55 16 15 O -0.47 -5.83 12.83 -87.94 -1.13 -6.96 16 16 N -0.48 -12.22 4.22 -297.69 -1.26 -13.47 16 17 C 0.12 5.18 4.60 46.75 0.22 5.39 16 18 C 0.16 8.64 6.79 86.44 0.59 9.23 16 19 N -0.63 -36.91 3.70 -716.66 -2.65 -39.56 16 20 C -0.24 -14.55 10.70 84.03 0.90 -13.65 16 21 H 0.08 4.93 7.83 -2.91 -0.02 4.91 16 22 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.96 -62.48 11.39 21.65 0.25 -62.23 16 24 Si 0.99 48.93 29.55 68.60 2.03 50.95 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 27 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.12 5.58 8.27 86.49 0.72 6.29 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.10 6.75 -2.39 -0.02 1.08 16 32 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 33 H 0.12 3.14 5.20 -5.14 -0.03 3.11 16 34 H 0.14 4.28 7.61 -2.91 -0.02 4.25 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.16 0.93 7.65 -2.91 -0.02 0.91 16 39 H 0.43 0.90 9.06 -74.05 -0.67 0.23 16 40 H 0.13 4.88 7.89 -2.39 -0.02 4.86 16 41 H 0.03 1.54 5.68 -2.39 -0.01 1.52 16 42 H 0.04 2.25 7.17 -2.39 -0.02 2.23 16 43 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.03 1.76 6.33 -2.39 -0.02 1.74 16 Total: -1.00 -86.31 366.36 1.78 -84.53 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.36 Total: 10.75 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.46 Total: 26.86 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -5.88 Total: -138.74 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.17 Total: -34.35 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.95 kcal Total: -86.31 1.78 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950505075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.115 kcal (2) G-P(sol) polarization free energy of solvation -86.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds