Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47250 * 2 1 4 4 C 1.34771 * 120.00425 * 274.79469 * 3 2 1 5 5 O 1.21699 * 120.00324 * 183.08536 * 4 3 2 6 6 C 1.46667 * 119.99734 * 3.08841 * 4 3 2 7 7 C 1.36727 * 125.85624 * 185.35090 * 6 4 3 8 8 C 1.39920 * 106.91101 * 179.84604 * 7 6 4 9 9 C 1.36506 * 107.02076 * 0.40691 * 8 7 6 10 10 C 1.47749 * 125.76694 * 179.72076 * 9 8 7 11 11 C 1.40039 * 120.92871 * 359.72239 * 10 9 8 12 12 C 1.37940 * 118.98290 * 179.75053 * 11 10 9 13 13 N 1.31929 * 120.91152 * 0.53585 * 12 11 10 14 14 C 1.31939 * 122.07358 * 359.73587 * 13 12 11 15 15 C 1.37941 * 120.90623 * 359.97438 * 14 13 12 16 16 O 1.34396 * 108.47019 * 359.74629 * 9 8 7 17 17 C 1.46506 * 119.99677 * 94.79276 * 3 2 1 18 18 C 1.53488 * 114.20593 * 231.71446 * 17 3 2 19 19 N 1.47067 * 87.98548 * 220.15144 * 18 17 3 20 20 C 1.36945 * 136.05827 * 207.08932 * 19 18 17 21 21 H 1.08007 * 119.99633 * 354.69716 * 20 19 18 22 22 C 1.38803 * 119.99991 * 174.69985 * 20 19 18 23 23 N 1.31622 * 120.00090 * 183.80922 * 22 20 19 24 24 Si 1.86799 * 120.00171 * 3.80552 * 22 20 19 25 25 H 1.48507 * 109.47265 * 174.23654 * 24 22 20 26 26 H 1.48495 * 109.47405 * 294.24328 * 24 22 20 27 27 H 1.48501 * 109.46969 * 54.24426 * 24 22 20 28 28 C 1.47057 * 87.88497 * 27.34231 * 19 18 17 29 29 H 1.08997 * 109.46981 * 299.99661 * 1 2 3 30 30 H 1.08999 * 109.47173 * 60.00096 * 1 2 3 31 31 H 1.09002 * 109.47350 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47427 * 240.00374 * 2 1 3 33 33 H 1.08998 * 109.47628 * 120.00525 * 2 1 3 34 34 H 1.08001 * 126.54606 * 359.97438 * 7 6 4 35 35 H 1.08000 * 126.48474 * 180.13703 * 8 7 6 36 36 H 1.08003 * 120.50606 * 0.02562 * 11 10 9 37 37 H 1.08006 * 119.54614 * 180.27465 * 12 11 10 38 38 H 1.07996 * 119.54598 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.50645 * 180.02562 * 15 14 13 40 40 H 1.08998 * 113.28138 * 4.78501 * 17 3 2 41 41 H 1.08995 * 113.47214 * 105.36786 * 18 17 3 42 42 H 1.09006 * 113.46856 * 334.92699 * 18 17 3 43 43 H 0.97001 * 120.00053 * 5.01174 * 23 22 20 44 44 H 1.08998 * 113.47148 * 87.44101 * 28 19 18 45 45 H 1.09000 * 113.46959 * 217.88148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1510 2.0491 -1.1630 5 8 2.6095 3.1764 -1.1685 6 6 1.7428 1.4174 -2.4221 7 6 1.9177 1.9394 -3.6737 8 6 1.3895 1.0123 -4.5788 9 6 0.9060 -0.0321 -3.8447 10 6 0.2516 -1.2400 -4.3883 11 6 0.0687 -1.4006 -5.7674 12 6 -0.5425 -2.5468 -6.2316 13 7 -0.9611 -3.4777 -5.3957 14 6 -0.8138 -3.3640 -4.0895 15 6 -0.2082 -2.2537 -3.5388 16 8 1.1253 0.2244 -2.5438 17 6 2.3624 2.0364 1.2644 18 6 1.6941 3.4032 1.4672 19 7 2.9630 3.8810 2.0369 20 6 3.3400 4.8425 2.9363 21 1 2.6040 5.5214 3.3413 22 6 4.6679 4.9446 3.3273 23 7 5.0178 5.8186 4.2471 24 14 5.9584 3.8415 2.5481 25 1 7.3057 4.2388 3.0303 26 1 5.6947 2.4293 2.9238 27 1 5.9010 3.9796 1.0707 28 6 3.6493 2.8763 1.2111 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3778 2.8856 -3.9173 35 1 1.3646 1.1073 -5.6543 36 1 0.4051 -0.6408 -6.4572 37 1 -0.6842 -2.6821 -7.2937 38 1 -1.1722 -4.1511 -3.4427 39 1 -0.0906 -2.1675 -2.4686 40 1 2.2933 1.3728 2.1263 41 1 0.8754 3.3837 2.1864 42 1 1.4242 3.8972 0.5338 43 1 4.3392 6.3401 4.7037 44 1 3.8948 3.2312 0.2102 45 1 4.4962 2.4076 1.7122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950505158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 106.612361 kcal Electronic energy + Delta-G solvation = -29477.505740 eV Core-core repulsion = 25465.216454 eV Total energy + Delta-G solvation = -4012.289286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.08415 -40.50537 -40.22112 -37.41967 -35.83876 -34.11830 -33.22325 -32.33879 -31.72668 -30.41019 -29.66991 -27.60217 -25.36406 -25.11645 -24.19173 -23.58378 -23.17771 -21.73016 -21.54486 -20.25629 -19.48959 -18.18328 -17.57942 -17.12986 -16.68152 -16.59302 -16.27621 -16.04168 -15.52288 -15.08314 -14.97054 -14.35590 -14.32700 -14.29565 -14.08541 -13.53084 -13.41599 -13.21786 -13.12957 -13.08356 -13.02960 -12.56108 -12.15772 -12.04367 -11.70353 -11.57510 -11.23619 -11.16079 -10.93476 -10.68108 -10.31324 -10.22901 -10.05284 -9.83275 -9.71335 -9.29028 -9.05087 -8.84480 -8.63284 -8.32362 -7.04013 -6.25591 -3.16759 0.00992 0.61382 1.20870 2.14819 2.16629 2.91902 3.09442 3.36223 3.43162 3.53928 3.71562 3.87537 3.95631 4.21667 4.42901 4.50557 4.51503 4.61939 4.65085 4.80042 4.92629 4.98052 5.02534 5.12245 5.22426 5.25351 5.26734 5.29330 5.39147 5.44347 5.51051 5.60307 5.61996 5.65199 5.70734 5.98432 6.01977 6.08854 6.11632 6.24862 6.33353 6.37396 6.53713 6.59291 7.11745 7.18150 7.38906 7.45080 8.08862 8.28236 9.03101 9.55291 10.42089 11.26368 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.002555 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.110005 B =10955.699192 C =11371.940099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.591 3.409 5 O -0.491 6.491 6 C -0.045 4.045 7 C -0.128 4.128 8 C -0.180 4.180 9 C 0.027 3.973 10 C 0.032 3.968 11 C -0.153 4.153 12 C 0.105 3.895 13 N -0.485 5.485 14 C 0.105 3.895 15 C -0.156 4.156 16 O -0.145 6.145 17 C 0.098 3.902 18 C 0.117 3.883 19 N -0.620 5.620 20 C -0.296 4.296 21 H 0.082 0.918 22 C -0.025 4.025 23 N -0.936 5.936 24 Si 1.074 2.926 25 H -0.296 1.296 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.076 3.924 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -20.547 -20.739 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.378 3.622 5 O -0.367 6.367 6 C -0.098 4.098 7 C -0.148 4.148 8 C -0.199 4.199 9 C -0.025 4.025 10 C 0.023 3.977 11 C -0.173 4.173 12 C -0.051 4.051 13 N -0.194 5.194 14 C -0.051 4.051 15 C -0.176 4.176 16 O -0.040 6.040 17 C -0.006 4.006 18 C -0.011 4.011 19 N -0.348 5.348 20 C -0.422 4.422 21 H 0.100 0.900 22 C -0.223 4.223 23 N -0.579 5.579 24 Si 0.907 3.093 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.049 4.049 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.160 0.840 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.004 -20.984 -20.634 31.419 hybrid contribution -1.326 1.220 0.201 1.813 sum -12.330 -19.764 -20.433 30.986 Atomic orbital electron populations 1.22202 0.95544 1.02058 1.02678 1.21752 0.94899 0.82219 1.03324 1.47961 1.63857 1.14005 1.06295 1.16700 0.79280 0.85221 0.81033 1.90941 1.43741 1.17176 1.84852 1.22519 1.04449 0.86021 0.96840 1.21913 1.01265 1.01339 0.90276 1.21781 1.03321 0.93808 1.01021 1.20539 1.03779 0.96423 0.81756 1.18078 0.95771 0.90523 0.93285 1.22126 1.00982 1.00108 0.94060 1.22716 0.93446 0.88856 1.00107 1.67660 1.17202 1.30053 1.04460 1.22752 0.94624 0.96363 0.91367 1.22345 0.99354 0.94382 1.01536 1.84356 1.60149 1.33703 1.25840 1.23773 0.99438 0.93641 0.83735 1.22673 0.91079 0.90365 0.96936 1.45776 1.02226 1.41105 1.45718 1.20135 0.96118 1.09572 1.16363 0.90003 1.25688 0.96651 1.00933 0.99065 1.70925 1.35508 1.25567 1.25870 0.83667 0.75766 0.74258 0.75601 1.22386 1.22228 1.21423 1.23501 0.94263 0.89718 0.97433 0.91994 0.92361 0.91667 0.89986 0.89663 0.81661 0.82344 0.84023 0.82054 0.82147 0.83967 0.86312 0.93897 0.93124 0.93011 0.90323 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.65 37.16 0.36 -1.16 16 2 C 0.10 1.05 5.72 -4.04 -0.02 1.03 16 3 N -0.59 -8.71 2.77 -167.27 -0.46 -9.17 16 4 C 0.59 9.51 7.09 -12.86 -0.09 9.42 16 5 O -0.49 -9.84 12.40 5.19 0.06 -9.77 16 6 C -0.05 -0.58 6.52 -36.73 -0.24 -0.82 16 7 C -0.13 -1.45 10.60 -39.50 -0.42 -1.87 16 8 C -0.18 -1.60 10.26 -39.58 -0.41 -2.00 16 9 C 0.03 0.25 7.05 -36.32 -0.26 -0.01 16 10 C 0.03 0.25 5.91 -104.66 -0.62 -0.37 16 11 C -0.15 -0.95 9.64 -39.02 -0.38 -1.32 16 12 C 0.11 0.66 11.17 -17.62 -0.20 0.47 16 13 N -0.48 -3.91 10.34 -13.36 -0.14 -4.05 16 14 C 0.11 0.71 11.17 -17.61 -0.20 0.52 16 15 C -0.16 -1.10 9.82 -39.02 -0.38 -1.48 16 16 O -0.14 -1.54 5.56 3.84 0.02 -1.52 16 17 C 0.10 1.76 4.80 -67.68 -0.32 1.43 16 18 C 0.12 2.49 8.10 -8.52 -0.07 2.42 16 19 N -0.62 -16.22 3.69 -184.66 -0.68 -16.90 16 20 C -0.30 -8.90 11.09 -15.06 -0.17 -9.06 16 21 H 0.08 2.57 8.05 -52.48 -0.42 2.15 16 22 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 23 N -0.94 -30.35 13.70 55.49 0.76 -29.59 16 24 Si 1.07 28.18 25.09 -169.99 -4.27 23.91 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.29 -7.14 6.35 56.52 0.36 -6.78 16 27 H -0.29 -7.33 6.66 56.52 0.38 -6.96 16 28 C 0.08 1.75 5.29 -8.39 -0.04 1.71 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 6.58 -51.93 -0.34 0.26 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.80 5.74 -51.93 -0.30 0.50 16 33 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.16 0.92 7.33 -52.49 -0.38 0.54 16 36 H 0.14 0.55 7.11 -52.48 -0.37 0.18 16 37 H 0.16 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.82 7.99 -52.48 -0.42 0.40 16 40 H 0.12 1.91 7.94 -51.93 -0.41 1.50 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 1.13 6.36 -51.93 -0.33 0.80 16 43 H 0.26 8.30 8.73 -40.82 -0.36 7.94 16 44 H 0.08 1.92 5.26 -51.93 -0.27 1.64 16 45 H 0.05 1.13 4.01 -51.93 -0.21 0.92 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -36.74 364.66 -8.39 -45.12 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.63 Total: -1.55 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -3.55 Total: -1.98 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.52 Total: -59.72 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 28.18 SS G_CDS: -4.27 Total: 23.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.74 -8.39 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950505158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.737 kcal (2) G-P(sol) polarization free energy of solvation -36.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds