Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46506 * 109.47417 * 2 1 4 4 C 1.34779 * 119.99716 * 83.57475 * 3 2 1 5 5 O 1.21588 * 119.99487 * 184.68139 * 4 3 2 6 6 C 1.47525 * 120.00015 * 4.40296 * 4 3 2 7 7 C 1.36624 * 126.82572 * 173.95344 * 6 4 3 8 8 C 1.42192 * 103.78932 * 179.87759 * 7 6 4 9 9 C 1.48449 * 126.84151 * 180.11552 * 8 7 6 10 10 C 1.39324 * 120.12128 * 0.03470 * 9 8 7 11 11 C 1.38019 * 119.87818 * 179.72194 * 10 9 8 12 12 C 1.38312 * 120.12214 * 0.54757 * 11 10 9 13 13 C 1.38320 * 120.23899 * 359.72380 * 12 11 10 14 14 C 1.38025 * 120.12061 * 359.97438 * 13 12 11 15 15 N 1.30927 * 106.31538 * 0.39115 * 8 7 6 16 16 O 1.20867 * 111.80583 * 359.74786 * 15 8 7 17 17 C 1.46493 * 119.99931 * 263.57455 * 3 2 1 18 18 C 1.53944 * 113.74269 * 223.79128 * 17 3 2 19 19 N 1.47816 * 86.03750 * 222.08703 * 18 17 3 20 20 C 1.36941 * 134.45503 * 204.64451 * 19 18 17 21 21 H 1.07996 * 119.99760 * 184.72966 * 20 19 18 22 22 C 1.38808 * 119.99897 * 4.73154 * 20 19 18 23 23 N 1.31622 * 120.00463 * 5.20076 * 22 20 19 24 24 Si 1.86806 * 119.99878 * 185.20090 * 22 20 19 25 25 H 1.48497 * 109.47249 * 94.99497 * 24 22 20 26 26 H 1.48499 * 109.46908 * 214.99352 * 24 22 20 27 27 H 1.48502 * 109.47068 * 334.99343 * 24 22 20 28 28 C 1.47578 * 91.04917 * 24.54937 * 19 18 17 29 29 H 1.09006 * 109.47368 * 300.00135 * 1 2 3 30 30 H 1.09003 * 109.47366 * 59.99802 * 1 2 3 31 31 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47368 * 239.99865 * 2 1 3 33 33 H 1.09003 * 109.47366 * 120.00198 * 2 1 3 34 34 H 1.07996 * 128.10642 * 0.02562 * 7 6 4 35 35 H 1.08001 * 120.05700 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.93633 * 180.27456 * 11 10 9 37 37 H 1.08005 * 119.88154 * 179.74793 * 12 11 10 38 38 H 1.08001 * 119.94092 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.06075 * 180.02562 * 14 13 12 40 40 H 1.09002 * 112.95001 * 355.38876 * 17 3 2 41 41 H 1.09000 * 113.76882 * 336.35231 * 18 17 3 42 42 H 1.09000 * 113.76453 * 107.75215 * 18 17 3 43 43 H 0.97000 * 120.00213 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.76751 * 221.14743 * 28 19 18 45 45 H 1.09003 * 113.76740 * 89.75360 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1198 2.0601 1.1599 5 8 2.4435 3.2321 1.1520 6 6 1.8323 1.3828 2.4386 7 6 2.0002 1.8966 3.6933 8 6 1.5758 0.8442 4.5501 9 6 1.5453 0.8621 6.0342 10 6 1.9612 1.9962 6.7284 11 6 1.9253 2.0094 8.1081 12 6 1.4882 0.8956 8.8018 13 6 1.0795 -0.2350 8.1178 14 6 1.1054 -0.2570 6.7379 15 7 1.2229 -0.1459 3.7695 16 8 1.3577 0.1333 2.6013 17 6 2.3964 2.0245 -1.2607 18 6 3.7100 2.8231 -1.1796 19 7 3.0135 3.8529 -1.9792 20 6 3.4223 4.8475 -2.8272 21 1 2.6994 5.5342 -3.2422 22 6 4.7657 4.9730 -3.1532 23 7 5.6320 4.0767 -2.7308 24 14 5.3441 6.4141 -4.1916 25 1 5.8227 7.5037 -3.3034 26 1 6.4526 5.9735 -5.0760 27 1 4.2167 6.9107 -5.0209 28 6 1.7016 3.3774 -1.4989 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3670 2.8741 3.9696 35 1 2.3071 2.8648 6.1878 36 1 2.2433 2.8897 8.6471 37 1 1.4655 0.9087 9.8815 38 1 0.7387 -1.1020 8.6643 39 1 0.7856 -1.1401 6.2048 40 1 2.3456 1.3488 -2.1145 41 1 3.9649 3.1481 -0.1709 42 1 4.5437 2.3511 -1.6994 43 1 6.5708 4.1646 -2.9584 44 1 0.9349 3.3474 -2.2731 45 1 1.3654 3.8657 -0.5842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950717339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 130.524642 kcal Electronic energy + Delta-G solvation = -29082.324725 eV Core-core repulsion = 25071.072353 eV Total energy + Delta-G solvation = -4011.252371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.09875 -40.13458 -39.42552 -37.02928 -35.66078 -34.58075 -32.36432 -31.87002 -31.24456 -30.59655 -30.15700 -27.46578 -24.94359 -24.70998 -24.43031 -23.35330 -23.26109 -22.16647 -21.79318 -20.27036 -19.26212 -17.93352 -17.40146 -16.90317 -16.75905 -16.41450 -15.88494 -15.43382 -15.10205 -14.94575 -14.62646 -14.34371 -14.12148 -13.81149 -13.69642 -13.58328 -13.36120 -13.33479 -12.97628 -12.46107 -12.39896 -11.91287 -11.71900 -11.69980 -11.48049 -11.33917 -11.28442 -11.20793 -10.95681 -10.83421 -10.59185 -10.19905 -9.97016 -9.80805 -9.71575 -9.46854 -9.31739 -8.84830 -8.68592 -8.24553 -6.76609 -5.69979 -3.02613 0.48790 0.87213 1.03914 2.16956 2.56613 3.11976 3.17858 3.43593 3.48579 3.50189 3.53270 3.65629 4.12793 4.52488 4.60155 4.60413 4.71937 4.75768 4.86475 5.01571 5.03290 5.12831 5.19515 5.27061 5.29381 5.42380 5.50124 5.55729 5.64253 5.66978 5.70097 5.78022 5.82033 5.84900 6.08393 6.13116 6.14724 6.21680 6.31876 6.50649 6.56247 6.58427 6.87996 7.33422 7.46856 7.58383 7.61475 7.88774 8.04341 8.23707 9.10127 9.76890 10.66546 11.45924 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002450 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.147529 B =11425.201545 C =12587.520249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.586 5.586 4 C 0.592 3.408 5 O -0.484 6.484 6 C -0.064 4.064 7 C -0.151 4.151 8 C 0.051 3.949 9 C -0.020 4.020 10 C -0.093 4.093 11 C -0.119 4.119 12 C -0.111 4.111 13 C -0.121 4.121 14 C -0.092 4.092 15 N -0.347 5.347 16 O 0.124 5.876 17 C 0.090 3.910 18 C 0.148 3.852 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.184 0.816 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 -12.149 19.376 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.376 3.624 5 O -0.358 6.358 6 C -0.130 4.130 7 C -0.173 4.173 8 C -0.104 4.104 9 C -0.021 4.021 10 C -0.113 4.113 11 C -0.137 4.137 12 C -0.129 4.129 13 C -0.139 4.139 14 C -0.111 4.111 15 N -0.047 5.047 16 O 0.051 5.949 17 C -0.012 4.012 18 C 0.022 3.978 19 N -0.329 5.329 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.530 -12.553 19.325 25.336 hybrid contribution 0.617 1.476 -0.362 1.640 sum -9.913 -11.078 18.963 24.095 Atomic orbital electron populations 1.22182 0.95554 1.02245 1.02454 1.21824 0.94809 0.82514 1.03636 1.48120 1.63033 1.13870 1.06815 1.16652 0.79203 0.85766 0.80778 1.90963 1.45911 1.13920 1.84975 1.24537 1.04329 0.86309 0.97811 1.22861 1.02899 1.01755 0.89773 1.21910 1.02618 0.90840 0.95077 1.17692 1.01872 0.95423 0.87073 1.21207 0.98327 0.97246 0.94483 1.21109 1.00001 0.98803 0.93756 1.21301 0.98152 0.93294 1.00186 1.21115 1.00309 0.98628 0.93864 1.21230 0.98022 0.97576 0.94292 1.73928 1.18017 1.23003 0.89781 1.85137 1.61096 1.28143 1.20529 1.24275 1.00360 0.93579 0.83026 1.22837 0.92696 0.86798 0.95509 1.45607 1.00696 1.37471 1.49116 1.18988 0.92231 1.05122 1.18004 0.90293 1.24775 0.95843 0.98995 1.00967 1.69819 1.02041 1.35016 1.49771 0.86095 0.78239 0.81911 0.79505 1.21702 1.21742 1.20577 1.22963 0.90640 0.90875 0.97057 0.92827 0.91938 0.91414 0.89352 0.89991 0.79858 0.85159 0.85307 0.85704 0.85531 0.85327 0.87099 0.93367 0.90363 0.93740 0.94242 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.78 37.15 0.36 -1.34 16 2 C 0.10 1.10 5.74 -4.04 -0.02 1.08 16 3 N -0.59 -9.17 2.75 -169.13 -0.46 -9.63 16 4 C 0.59 10.03 7.04 -12.47 -0.09 9.95 16 5 O -0.48 -10.07 12.62 5.29 0.07 -10.00 16 6 C -0.06 -0.91 6.68 -36.38 -0.24 -1.16 16 7 C -0.15 -1.95 10.31 -38.65 -0.40 -2.35 16 8 C 0.05 0.64 7.05 -82.53 -0.58 0.06 16 9 C -0.02 -0.21 5.88 -104.88 -0.62 -0.83 16 10 C -0.09 -0.86 9.60 -39.26 -0.38 -1.24 16 11 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 12 C -0.11 -0.78 10.04 -39.52 -0.40 -1.18 16 13 C -0.12 -0.93 10.03 -39.63 -0.40 -1.33 16 14 C -0.09 -0.89 9.70 -39.26 -0.38 -1.27 16 15 N -0.35 -4.54 11.78 33.39 0.39 -4.15 16 16 O 0.12 1.61 6.90 15.55 0.11 1.71 16 17 C 0.09 1.71 4.60 -70.14 -0.32 1.39 16 18 C 0.15 3.61 7.00 -2.84 -0.02 3.59 16 19 N -0.60 -16.08 3.70 -177.87 -0.66 -16.74 16 20 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -27.78 11.29 55.49 0.63 -27.15 16 24 Si 0.91 22.63 29.56 -169.99 -5.02 17.60 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.11 2.41 8.26 -2.97 -0.02 2.39 16 29 H 0.05 0.60 7.19 -51.93 -0.37 0.23 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 33 H 0.08 0.90 5.38 -51.93 -0.28 0.62 16 34 H 0.18 2.10 7.57 -52.49 -0.40 1.70 16 35 H 0.13 1.04 7.22 -52.49 -0.38 0.66 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.13 1.20 7.89 -52.49 -0.41 0.79 16 40 H 0.11 1.91 7.90 -51.93 -0.41 1.50 16 41 H 0.05 1.27 5.78 -51.93 -0.30 0.97 16 42 H 0.08 2.09 6.87 -51.93 -0.36 1.73 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.15 6.23 -51.93 -0.32 0.83 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.01 372.49 -9.22 -43.24 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.72 Total: -0.17 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -4.16 Total: -0.32 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.10 Total: -57.67 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.17 Total: -8.29 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.01 -9.22 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950717339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.761 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds