Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.34775 * 120.00090 * 249.53096 * 3 2 1 5 5 O 1.21553 * 120.00096 * 183.67388 * 4 3 2 6 6 C 1.47871 * 120.00039 * 3.67640 * 4 3 2 7 7 C 1.39675 * 120.07342 * 29.73755 * 6 4 3 8 8 C 1.38054 * 120.14701 * 179.97438 * 7 6 4 9 9 C 1.38098 * 120.29724 * 0.02562 * 8 7 6 10 10 C 1.39647 * 120.15110 * 0.02562 * 9 8 7 11 11 C 1.47840 * 120.07574 * 179.97438 * 10 9 8 12 12 C 1.35759 * 126.58607 * 0.02562 * 11 10 9 13 13 N 1.34141 * 107.52216 * 179.97438 * 12 11 10 14 14 C 1.30356 * 108.89759 * 0.02562 * 13 12 11 15 15 O 1.34002 * 109.03634 * 359.74982 * 14 13 12 16 16 C 1.39312 * 120.07107 * 209.46146 * 6 4 3 17 17 C 1.46506 * 119.99887 * 69.25468 * 3 2 1 18 18 C 1.53940 * 113.74251 * 223.16395 * 17 3 2 19 19 N 1.47810 * 86.03508 * 222.08716 * 18 17 3 20 20 C 1.36944 * 134.45609 * 204.64592 * 19 18 17 21 21 H 1.08000 * 120.00100 * 179.86300 * 20 19 18 22 22 C 1.38809 * 119.99769 * 359.86519 * 20 19 18 23 23 N 1.31623 * 120.00485 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46887 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47314 * 120.00125 * 24 22 20 27 27 H 1.48493 * 109.47485 * 240.00235 * 24 22 20 28 28 C 1.47578 * 91.05390 * 24.54891 * 19 18 17 29 29 H 1.08996 * 109.47337 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47327 * 60.00088 * 1 2 3 31 31 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46683 * 240.00615 * 2 1 3 33 33 H 1.08996 * 109.47257 * 120.00400 * 2 1 3 34 34 H 1.08005 * 119.93102 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.85407 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.92500 * 179.97438 * 9 8 7 37 37 H 1.08002 * 126.23998 * 359.95154 * 12 11 10 38 38 H 1.08000 * 125.48541 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.15302 * 0.02562 * 16 6 4 40 40 H 1.08992 * 112.94037 * 354.76137 * 17 3 2 41 41 H 1.09009 * 113.77338 * 336.34898 * 18 17 3 42 42 H 1.08995 * 113.76804 * 107.74545 * 18 17 3 43 43 H 0.96998 * 120.00609 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.77357 * 221.15340 * 28 19 18 45 45 H 1.09005 * 113.76664 * 89.75351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6277 1.8805 -1.0935 5 8 3.0922 3.0036 -1.0709 6 6 2.7313 1.0622 -2.3207 7 6 1.7511 0.1109 -2.6125 8 6 1.8460 -0.6536 -3.7581 9 6 2.9095 -0.4842 -4.6226 10 6 3.8972 0.4625 -4.3425 11 6 5.0353 0.6421 -5.2688 12 6 5.2530 -0.0366 -6.4243 13 7 6.3916 0.4301 -6.9584 14 6 6.8733 1.3586 -6.1805 15 8 6.0558 1.5168 -5.1306 16 6 3.8039 1.2423 -3.1914 17 6 1.8387 2.2216 1.1865 18 6 1.3812 3.6562 0.8665 19 7 2.3517 4.0856 1.8952 20 6 2.4676 5.1833 2.7058 21 1 3.2948 5.2602 3.3958 22 6 1.5216 6.1971 2.6406 23 7 0.5136 6.1037 1.7993 24 14 1.6792 7.6941 3.7467 25 1 2.8911 7.5581 4.5940 26 1 1.7942 8.9167 2.9117 27 1 0.4779 7.7979 4.6134 28 6 3.1441 2.8560 1.7000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.9169 -0.0269 -1.9404 35 1 1.0851 -1.3875 -3.9793 36 1 2.9780 -1.0858 -5.5169 37 1 4.6244 -0.8113 -6.8379 38 1 7.7825 1.9144 -6.3563 39 1 4.5624 1.9792 -2.9726 40 1 1.2504 1.7368 1.9655 41 1 1.6355 3.9840 -0.1415 42 1 0.3425 3.8552 1.1304 43 1 -0.1476 6.8119 1.7540 44 1 3.5103 2.4172 2.6281 45 1 3.9174 2.9481 0.9373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957077084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 112.288353 kcal Electronic energy + Delta-G solvation = -29247.953283 eV Core-core repulsion = 25235.910127 eV Total energy + Delta-G solvation = -4012.043156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56040 -40.70284 -38.86135 -36.75526 -35.75659 -35.06313 -32.87572 -31.99162 -31.34693 -30.24605 -28.97437 -27.37256 -24.68782 -24.63424 -24.13028 -23.26462 -23.10258 -21.99105 -21.59782 -20.27751 -18.97985 -17.88668 -17.00911 -16.90296 -16.84863 -16.58015 -15.94557 -15.48029 -15.22714 -14.89640 -14.51601 -14.37679 -14.16878 -13.94182 -13.81229 -13.65090 -13.29537 -13.07559 -12.78188 -12.39837 -12.30774 -11.83387 -11.69874 -11.67054 -11.51694 -11.38447 -11.27112 -11.12618 -10.90780 -10.82690 -10.62585 -10.10988 -10.05789 -9.91501 -9.45032 -9.36753 -9.19363 -8.60627 -8.37766 -8.11981 -6.72839 -5.67311 -2.97968 0.27384 0.83686 1.59582 2.37209 2.39993 2.97016 3.16946 3.44397 3.49575 3.52075 3.65478 3.91045 4.26437 4.43502 4.55626 4.57908 4.66927 4.73411 4.80004 4.98971 5.06863 5.11140 5.21242 5.33889 5.36970 5.38979 5.55886 5.60233 5.61241 5.66997 5.68584 5.81915 5.85817 5.95569 5.99304 6.06701 6.09146 6.21435 6.39042 6.47437 6.63859 6.64481 6.97563 7.35541 7.35809 7.61733 7.65326 7.76729 8.06893 8.50758 9.14074 9.80139 10.71218 11.50148 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002767 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.095255 B =10118.327805 C =11578.025525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 N -0.594 5.594 4 C 0.547 3.453 5 O -0.503 6.503 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.124 4.124 9 C -0.078 4.078 10 C -0.029 4.029 11 C 0.006 3.994 12 C -0.027 4.027 13 N -0.488 5.488 14 C 0.174 3.826 15 O -0.195 6.195 16 C -0.043 4.043 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.111 3.889 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.186 0.814 38 H 0.252 0.748 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -20.147 -14.288 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.047 4.047 3 N -0.327 5.327 4 C 0.334 3.666 5 O -0.378 6.378 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.142 4.142 9 C -0.096 4.096 10 C -0.030 4.030 11 C -0.047 4.047 12 C -0.167 4.167 13 N -0.216 5.216 14 C -0.051 4.051 15 O -0.081 6.081 16 C -0.062 4.062 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.016 4.016 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.203 0.797 38 H 0.267 0.733 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.115 -19.356 -14.620 24.604 hybrid contribution -0.147 1.125 1.033 1.534 sum 3.968 -18.231 -13.588 23.081 Atomic orbital electron populations 1.22273 0.95653 1.02164 1.03458 1.22251 0.94780 0.83758 1.03882 1.48009 1.57562 1.12668 1.14467 1.18206 0.79204 0.86502 0.82681 1.90888 1.45632 1.18474 1.82804 1.20084 0.96790 0.98393 0.96743 1.22263 0.99016 0.93367 0.96917 1.21023 0.98317 1.00685 0.94150 1.21163 0.92748 0.96215 0.99485 1.17493 0.92338 0.99342 0.93838 1.21428 0.90791 0.94122 0.98386 1.23271 0.96311 1.03401 0.93715 1.70354 1.10039 1.11118 1.30068 1.28174 0.97301 0.97560 0.82107 1.84535 1.29681 1.49830 1.44009 1.21361 0.97097 0.96440 0.91324 1.24085 0.99771 0.91713 0.85726 1.22719 0.95697 0.84989 0.93520 1.45685 1.26219 1.19314 1.41768 1.19038 1.07782 0.95039 1.12447 0.90270 1.24778 0.97725 0.98535 0.99599 1.69841 1.14374 1.33758 1.38785 0.86049 0.77205 0.82915 0.79629 1.20514 1.21811 1.21795 1.22929 0.94103 0.87562 0.96979 0.91187 0.91893 0.91464 0.88397 0.90979 0.82754 0.84550 0.85031 0.79674 0.73250 0.84281 0.87743 0.92807 0.91530 0.93838 0.94511 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.18 37.16 0.34 -1.29 16 2 C 0.08 0.80 5.61 -4.04 -0.02 0.78 16 3 N -0.59 -9.30 2.81 -169.02 -0.47 -9.77 16 4 C 0.55 9.49 6.87 -12.32 -0.08 9.41 16 5 O -0.50 -11.20 12.40 5.32 0.07 -11.14 16 6 C -0.12 -1.57 5.46 -105.02 -0.57 -2.14 16 7 C -0.10 -0.96 7.38 -39.11 -0.29 -1.25 16 8 C -0.12 -0.94 10.02 -39.70 -0.40 -1.33 16 9 C -0.08 -0.63 9.57 -39.11 -0.37 -1.00 16 10 C -0.03 -0.32 5.87 -105.03 -0.62 -0.94 16 11 C 0.01 0.07 7.07 -36.54 -0.26 -0.19 16 12 C -0.03 -0.27 11.29 -17.43 -0.20 -0.46 16 13 N -0.49 -5.17 11.27 -14.68 -0.17 -5.33 16 14 C 0.17 1.53 13.22 52.14 0.69 2.22 16 15 O -0.19 -2.21 10.59 4.22 0.04 -2.16 16 16 C -0.04 -0.57 9.27 -38.77 -0.36 -0.93 16 17 C 0.09 1.75 4.25 -70.16 -0.30 1.45 16 18 C 0.16 3.95 6.78 -2.84 -0.02 3.93 16 19 N -0.60 -16.55 3.70 -177.92 -0.66 -17.21 16 20 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.45 11.39 55.49 0.63 -27.82 16 24 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C 0.11 2.50 8.27 -2.97 -0.02 2.48 16 29 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 30 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.87 4.02 -51.93 -0.21 0.66 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.16 1.32 3.25 -52.48 -0.17 1.15 16 35 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.67 7.02 -52.48 -0.37 0.30 16 37 H 0.19 1.22 7.29 -52.49 -0.38 0.83 16 38 H 0.25 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.14 2.04 7.80 -52.49 -0.41 1.63 16 40 H 0.10 1.85 7.72 -51.93 -0.40 1.45 16 41 H 0.05 1.49 5.68 -51.92 -0.29 1.20 16 42 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 1.16 6.33 -51.93 -0.33 0.83 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -37.86 366.85 -8.14 -46.01 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.35 Total: 0.13 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.74 Total: 3.79 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.67 Total: -60.13 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.11 Total: -13.30 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.86 -8.14 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957077084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.293 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds