Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.34775 * 120.00090 * 249.53096 * 3 2 1 5 5 O 1.21553 * 120.00096 * 183.67388 * 4 3 2 6 6 C 1.47871 * 120.00039 * 3.67640 * 4 3 2 7 7 C 1.39675 * 120.07342 * 29.73755 * 6 4 3 8 8 C 1.38054 * 120.14701 * 179.97438 * 7 6 4 9 9 C 1.38098 * 120.29724 * 0.02562 * 8 7 6 10 10 C 1.39647 * 120.15110 * 0.02562 * 9 8 7 11 11 C 1.47840 * 120.07574 * 179.97438 * 10 9 8 12 12 C 1.35759 * 126.58607 * 0.02562 * 11 10 9 13 13 N 1.34141 * 107.52216 * 179.97438 * 12 11 10 14 14 C 1.30356 * 108.89759 * 0.02562 * 13 12 11 15 15 O 1.34002 * 109.03634 * 359.74982 * 14 13 12 16 16 C 1.39312 * 120.07107 * 209.46146 * 6 4 3 17 17 C 1.46506 * 119.99887 * 69.25468 * 3 2 1 18 18 C 1.53940 * 113.74251 * 223.16395 * 17 3 2 19 19 N 1.47810 * 86.03508 * 222.08716 * 18 17 3 20 20 C 1.36944 * 134.45609 * 204.64592 * 19 18 17 21 21 H 1.08000 * 120.00100 * 179.86300 * 20 19 18 22 22 C 1.38809 * 119.99769 * 359.86519 * 20 19 18 23 23 N 1.31623 * 120.00485 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46887 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47314 * 120.00125 * 24 22 20 27 27 H 1.48493 * 109.47485 * 240.00235 * 24 22 20 28 28 C 1.47578 * 91.05390 * 24.54891 * 19 18 17 29 29 H 1.08996 * 109.47337 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47327 * 60.00088 * 1 2 3 31 31 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46683 * 240.00615 * 2 1 3 33 33 H 1.08996 * 109.47257 * 120.00400 * 2 1 3 34 34 H 1.08005 * 119.93102 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.85407 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.92500 * 179.97438 * 9 8 7 37 37 H 1.08002 * 126.23998 * 359.95154 * 12 11 10 38 38 H 1.08000 * 125.48541 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.15302 * 0.02562 * 16 6 4 40 40 H 1.08992 * 112.94037 * 354.76137 * 17 3 2 41 41 H 1.09009 * 113.77338 * 336.34898 * 18 17 3 42 42 H 1.08995 * 113.76804 * 107.74545 * 18 17 3 43 43 H 0.96998 * 120.00609 * 179.97438 * 23 22 20 44 44 H 1.09000 * 113.77357 * 221.15340 * 28 19 18 45 45 H 1.09005 * 113.76664 * 89.75351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6277 1.8805 -1.0935 5 8 3.0922 3.0036 -1.0709 6 6 2.7313 1.0622 -2.3207 7 6 1.7511 0.1109 -2.6125 8 6 1.8460 -0.6536 -3.7581 9 6 2.9095 -0.4842 -4.6226 10 6 3.8972 0.4625 -4.3425 11 6 5.0353 0.6421 -5.2688 12 6 5.2530 -0.0366 -6.4243 13 7 6.3916 0.4301 -6.9584 14 6 6.8733 1.3586 -6.1805 15 8 6.0558 1.5168 -5.1306 16 6 3.8039 1.2423 -3.1914 17 6 1.8387 2.2216 1.1865 18 6 1.3812 3.6562 0.8665 19 7 2.3517 4.0856 1.8952 20 6 2.4676 5.1833 2.7058 21 1 3.2948 5.2602 3.3958 22 6 1.5216 6.1971 2.6406 23 7 0.5136 6.1037 1.7993 24 14 1.6792 7.6941 3.7467 25 1 2.8911 7.5581 4.5940 26 1 1.7942 8.9167 2.9117 27 1 0.4779 7.7979 4.6134 28 6 3.1441 2.8560 1.7000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.9169 -0.0269 -1.9404 35 1 1.0851 -1.3875 -3.9793 36 1 2.9780 -1.0858 -5.5169 37 1 4.6244 -0.8113 -6.8379 38 1 7.7825 1.9144 -6.3563 39 1 4.5624 1.9792 -2.9726 40 1 1.2504 1.7368 1.9655 41 1 1.6355 3.9840 -0.1415 42 1 0.3425 3.8552 1.1304 43 1 -0.1476 6.8119 1.7540 44 1 3.5103 2.4172 2.6281 45 1 3.9174 2.9481 0.9373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957077084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 84.414852 kcal Electronic energy + Delta-G solvation = -29249.161969 eV Core-core repulsion = 25235.910127 eV Total energy + Delta-G solvation = -4013.251842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.30584 -41.94530 -39.99871 -38.39074 -36.99179 -35.82801 -34.34207 -33.48675 -32.22954 -31.40707 -29.82268 -29.24453 -26.62254 -26.00369 -25.00397 -24.48096 -23.99715 -23.03002 -22.38087 -21.84374 -20.17602 -18.82102 -18.77839 -17.96941 -17.78583 -17.63136 -17.19610 -16.89180 -16.51896 -16.35675 -15.74246 -15.64203 -15.26033 -14.97628 -14.88467 -14.68436 -14.49548 -14.07736 -13.94428 -13.83037 -13.69914 -13.38375 -13.03468 -12.90107 -12.68436 -12.64214 -12.47350 -12.43181 -12.26018 -12.12641 -11.93115 -11.81996 -11.68269 -11.50799 -11.10451 -10.82128 -10.52961 -10.08112 -9.55067 -9.12677 -8.91656 -7.93051 -5.26949 -0.47960 -0.04852 0.85472 1.40713 1.43995 1.54083 1.64425 1.70928 1.85057 1.92198 2.46515 2.74977 3.24879 3.32575 3.37938 3.48155 3.58869 3.80559 3.85478 3.95135 4.01605 4.08581 4.20486 4.22177 4.30326 4.37864 4.48041 4.56623 4.61912 4.73340 4.82071 4.84995 4.89118 4.91115 4.97489 5.01473 5.20669 5.24591 5.26624 5.30309 5.31677 5.34013 5.46419 5.47584 5.76470 5.84620 5.89348 6.46181 6.63561 6.88256 7.19130 7.56621 8.54300 9.24488 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002767 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.095255 B =10118.327805 C =11578.025525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 N -0.591 5.591 4 C 0.540 3.460 5 O -0.569 6.569 6 C -0.138 4.138 7 C -0.094 4.094 8 C -0.104 4.104 9 C -0.063 4.063 10 C -0.034 4.034 11 C -0.025 4.025 12 C -0.016 4.016 13 N -0.515 5.515 14 C 0.181 3.819 15 O -0.221 6.221 16 C -0.069 4.069 17 C 0.129 3.871 18 C 0.156 3.844 19 N -0.633 5.633 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.284 1.284 28 C 0.110 3.890 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.219 0.781 38 H 0.290 0.710 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.021 0.979 42 H 0.039 0.961 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -23.881 -15.348 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 N -0.322 5.322 4 C 0.330 3.670 5 O -0.449 6.449 6 C -0.141 4.141 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.081 4.081 10 C -0.034 4.034 11 C -0.078 4.078 12 C -0.155 4.155 13 N -0.243 5.243 14 C -0.043 4.043 15 O -0.108 6.108 16 C -0.089 4.089 17 C 0.024 3.976 18 C 0.030 3.970 19 N -0.359 5.359 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.210 1.210 28 C -0.016 4.016 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.202 0.798 36 H 0.190 0.810 37 H 0.235 0.765 38 H 0.305 0.695 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.338 -23.179 -15.681 28.183 hybrid contribution 0.192 2.216 1.206 2.530 sum 3.530 -20.963 -14.476 25.719 Atomic orbital electron populations 1.22272 0.94188 1.04394 1.02371 1.22671 0.95878 0.80508 1.06018 1.48004 1.57131 1.14356 1.12723 1.18967 0.77862 0.86090 0.84119 1.90846 1.48463 1.21513 1.84097 1.19767 0.98811 1.00092 0.95416 1.22436 0.98035 0.92408 0.98328 1.21550 0.98545 0.99935 0.92109 1.21683 0.91199 0.94675 1.00515 1.17678 0.93332 0.99620 0.92807 1.21670 0.91360 0.95248 0.99481 1.23779 0.95986 1.03063 0.92680 1.70405 1.10888 1.12199 1.30850 1.29164 0.97526 0.96807 0.80775 1.84544 1.30475 1.50579 1.45160 1.21163 0.97115 0.97355 0.93239 1.23367 0.97107 0.89859 0.87231 1.22488 0.93788 0.89294 0.91396 1.46123 1.27835 1.20160 1.41800 1.19473 1.07856 0.96243 1.12812 0.89936 1.25727 0.97490 1.01671 1.01417 1.70055 1.15138 1.34500 1.40582 0.84920 0.77813 0.78356 0.77668 1.18855 1.22240 1.21025 1.22994 0.94816 0.86311 0.97471 0.93035 0.92335 0.87467 0.86075 0.89135 0.81226 0.79757 0.81016 0.76490 0.69520 0.87836 0.85101 0.96157 0.94298 0.94281 0.92329 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.18 71.98 0.66 -2.04 16 2 C 0.07 1.30 5.61 86.38 0.48 1.78 16 3 N -0.59 -18.71 2.81 -806.93 -2.26 -20.97 16 4 C 0.54 19.94 6.87 86.79 0.60 20.53 16 5 O -0.57 -28.03 12.40 -3.88 -0.05 -28.08 16 6 C -0.14 -3.79 5.46 -20.12 -0.11 -3.90 16 7 C -0.09 -1.61 7.38 22.57 0.17 -1.44 16 8 C -0.10 -1.06 10.02 22.19 0.22 -0.84 16 9 C -0.06 -0.76 9.57 22.58 0.22 -0.54 16 10 C -0.03 -0.71 5.87 -20.13 -0.12 -0.82 16 11 C -0.03 -0.54 7.07 24.24 0.17 -0.37 16 12 C -0.02 -0.28 11.29 83.77 0.95 0.67 16 13 N -0.52 -10.16 11.27 -315.09 -3.55 -13.71 16 14 C 0.18 3.08 13.22 130.46 1.72 4.80 16 15 O -0.22 -5.19 10.59 -7.80 -0.08 -5.27 16 16 C -0.07 -1.96 9.27 22.80 0.21 -1.75 16 17 C 0.13 5.13 4.25 46.75 0.20 5.33 16 18 C 0.16 8.42 6.78 86.44 0.59 9.00 16 19 N -0.63 -36.40 3.70 -716.80 -2.65 -39.05 16 20 C -0.24 -14.43 10.70 84.03 0.90 -13.53 16 21 H 0.08 4.83 7.83 -2.91 -0.02 4.81 16 22 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.95 -61.67 11.39 21.65 0.25 -61.43 16 24 Si 0.98 48.61 29.55 68.60 2.03 50.63 16 25 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 28 C 0.11 5.15 8.27 86.49 0.72 5.87 16 29 H 0.05 1.01 7.62 -2.39 -0.02 1.00 16 30 H 0.06 0.97 6.92 -2.39 -0.02 0.96 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 1.75 4.02 -2.39 -0.01 1.74 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.17 2.32 3.25 -2.91 -0.01 2.31 16 35 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.17 0.71 7.02 -2.91 -0.02 0.69 16 37 H 0.22 1.98 7.29 -2.91 -0.02 1.95 16 38 H 0.29 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.10 3.54 7.80 -2.91 -0.02 3.52 16 40 H 0.13 4.55 7.72 -2.39 -0.02 4.53 16 41 H 0.02 1.25 5.68 -2.38 -0.01 1.23 16 42 H 0.04 2.26 7.17 -2.39 -0.02 2.24 16 43 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.03 1.53 6.33 -2.38 -0.02 1.52 16 Total: -1.00 -92.26 366.85 2.75 -89.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.04 Total: 9.47 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 8.04 Total: 18.90 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -8.22 Total: -135.17 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.13 Total: -33.35 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.03 Total: 50.63 kcal Total: -92.26 2.75 -89.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957077084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.924 kcal (2) G-P(sol) polarization free energy of solvation -92.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds