Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21710 * 119.99681 * 179.97438 * 16 15 14 18 18 C 1.46576 * 120.00144 * 359.96705 * 16 15 14 19 19 C 1.36563 * 126.56254 * 179.71436 * 18 16 15 20 20 N 1.33312 * 107.65360 * 179.84108 * 19 18 16 21 21 C 1.31635 * 108.95367 * 0.43532 * 20 19 18 22 22 C 1.47704 * 125.54122 * 179.73230 * 21 20 19 23 23 C 1.39636 * 120.15157 * 179.71925 * 22 21 20 24 24 C 1.37948 * 119.84605 * 179.78608 * 23 22 21 25 25 C 1.38363 * 120.15100 * 0.49356 * 24 23 22 26 26 C 1.38374 * 120.30824 * 359.73856 * 25 24 23 27 27 C 1.37943 * 120.14925 * 0.02564 * 26 25 24 28 28 O 1.34203 * 108.91616 * 359.72583 * 21 20 19 29 29 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 30 30 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 31 31 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 32 32 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 33 33 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 34 34 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 35 35 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 36 36 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 37 37 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 38 38 H 1.08000 * 126.17402 * 359.97438 * 19 18 16 39 39 H 1.08002 * 120.07711 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.92383 * 180.23051 * 24 23 22 41 41 H 1.08000 * 119.84850 * 179.75988 * 25 24 23 42 42 H 1.07992 * 119.92472 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.07796 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.87950 * 120.47256 * 29 15 14 45 45 H 1.08993 * 109.88934 * 241.64504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1500 -4.3992 2.7427 18 6 1.3573 -5.9164 0.9909 19 6 1.0494 -7.0714 1.6515 20 7 1.1153 -8.0704 0.7712 21 6 1.4598 -7.5841 -0.4025 22 6 1.6447 -8.3724 -1.6378 23 6 2.0072 -7.7374 -2.8274 24 6 2.1825 -8.4804 -3.9764 25 6 1.9902 -9.8504 -3.9542 26 6 1.6263 -10.4856 -2.7800 27 6 1.4523 -9.7555 -1.6226 28 8 1.6155 -6.2555 -0.2942 29 6 1.8183 -2.1177 1.2322 30 1 -0.3634 0.0929 1.0234 31 1 -0.3634 0.8398 -0.5923 32 1 -0.3632 -0.9329 -0.4312 33 1 0.0108 3.0589 1.5212 34 1 2.3364 -1.9478 -2.0838 35 1 0.6843 -2.0464 -1.3869 36 1 3.1200 -3.8116 -0.7827 37 1 1.4446 -4.3227 -1.1476 38 1 0.7959 -7.1592 2.6976 39 1 2.1528 -6.6674 -2.8472 40 1 2.4665 -7.9910 -4.8963 41 1 2.1250 -10.4268 -4.8575 42 1 1.4782 -11.5552 -2.7696 43 1 1.1686 -10.2525 -0.7067 44 1 0.8541 -1.7932 1.6234 45 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971744646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = 54.887822 kcal Electronic energy + Delta-G solvation = -28829.100004 eV Core-core repulsion = 24814.567774 eV Total energy + Delta-G solvation = -4014.532230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.56876 -39.76991 -39.38280 -37.55212 -35.31625 -34.74886 -32.75507 -31.74695 -31.41817 -30.01367 -29.53369 -27.92399 -26.09982 -25.04055 -23.91715 -23.25836 -22.48779 -22.14242 -21.47826 -20.15419 -19.30102 -18.12057 -17.34684 -17.22420 -16.98335 -16.44110 -15.93588 -15.64345 -15.46788 -14.93171 -14.81532 -14.12880 -14.05715 -13.94080 -13.77456 -13.49349 -13.33602 -13.25734 -12.76130 -12.62950 -12.23551 -11.97931 -11.93960 -11.74005 -11.61667 -11.56491 -11.03647 -10.98657 -10.84880 -10.62843 -10.53342 -10.32902 -10.21382 -10.11085 -9.91298 -9.86145 -9.43939 -8.71967 -8.63059 -8.38589 -6.87084 -5.81331 -3.29842 0.07874 0.92966 1.13021 2.08037 2.32751 3.02412 3.10155 3.33501 3.38606 3.41002 3.42935 3.56319 4.36081 4.41967 4.48070 4.55588 4.63942 4.73444 4.91663 4.92032 5.02081 5.07179 5.19539 5.25702 5.35013 5.41420 5.49178 5.52719 5.57229 5.75573 5.81919 5.83701 5.92213 5.95583 6.01193 6.05705 6.24572 6.28278 6.38587 6.41649 6.54842 6.74675 6.78598 7.25452 7.27710 7.55216 7.65700 7.73435 8.04899 8.29755 9.12599 9.74996 10.24083 11.22798 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.002352 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.644081 B =11901.736981 C =13023.982984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.152 4.152 14 C 0.099 3.901 15 N -0.598 5.598 16 C 0.611 3.389 17 O -0.519 6.519 18 C -0.090 4.090 19 C 0.050 3.950 20 N -0.476 5.476 21 C 0.248 3.752 22 C -0.024 4.024 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.067 4.067 28 O -0.176 6.176 29 C 0.086 3.914 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.004 0.996 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.200 0.800 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -24.281 -10.343 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.192 4.192 14 C -0.024 4.024 15 N -0.330 5.330 16 C 0.398 3.602 17 O -0.397 6.397 18 C -0.145 4.145 19 C -0.094 4.094 20 N -0.204 5.204 21 C 0.046 3.954 22 C -0.026 4.026 23 C -0.104 4.104 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.142 4.142 27 C -0.087 4.087 28 O -0.063 6.063 29 C -0.038 4.038 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.217 0.783 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.603 -24.606 -9.531 26.516 hybrid contribution 0.381 1.659 -0.091 1.704 sum 2.984 -22.948 -9.623 25.062 Atomic orbital electron populations 1.20825 0.82463 0.95702 0.99766 1.43944 1.01883 0.99882 1.84678 1.19245 0.98974 0.85145 1.35936 0.91094 1.25085 0.98001 0.98759 0.97536 1.70085 1.20543 1.27466 1.36365 0.86162 0.78507 0.84082 0.77616 1.20215 1.21540 1.21650 1.21439 0.96580 0.85930 0.89809 0.90077 1.23418 1.02953 0.92776 1.00086 1.22469 1.00349 0.99329 0.80249 1.48466 1.65585 1.07994 1.11004 1.15996 0.78647 0.80400 0.85180 1.90912 1.50966 1.83348 1.14498 1.23429 1.11674 0.97701 0.81731 1.23567 0.98873 0.85937 1.01065 1.70576 1.18376 1.32369 0.99112 1.24052 0.98088 0.78522 0.94716 1.17333 1.05487 0.92115 0.87626 1.21343 0.96893 1.00719 0.91435 1.21122 1.00451 0.94136 0.98191 1.21426 0.97149 0.94808 0.98312 1.21138 1.00344 1.00386 0.92292 1.21235 0.96453 0.91588 0.99386 1.84665 1.66892 1.25269 1.29432 1.23099 1.02905 0.77541 1.00236 0.94791 0.93894 0.97806 0.93586 0.90096 0.90318 0.91314 0.90802 0.78277 0.84823 0.84966 0.85366 0.84991 0.84273 0.90335 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.75 59.85 0.46 4.19 16 2 N -0.58 -13.90 2.93 -171.21 -0.50 -14.40 16 3 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 6 N -0.90 -25.74 10.83 55.49 0.60 -25.14 16 7 Si 0.91 21.27 29.58 -169.99 -5.03 16.24 16 8 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.32 3.45 -65.93 -0.23 3.09 16 12 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 13 C -0.15 -2.35 6.61 -24.42 -0.16 -2.51 16 14 C 0.10 1.36 6.18 -2.53 -0.02 1.34 16 15 N -0.60 -10.01 3.33 -172.10 -0.57 -10.58 16 16 C 0.61 10.49 7.82 -12.90 -0.10 10.39 16 17 O -0.52 -10.34 17.22 5.18 0.09 -10.25 16 18 C -0.09 -1.31 6.96 -36.83 -0.26 -1.57 16 19 C 0.05 0.67 11.64 -17.51 -0.20 0.47 16 20 N -0.48 -6.23 10.86 -11.45 -0.12 -6.35 16 21 C 0.25 3.04 7.88 -13.77 -0.11 2.93 16 22 C -0.02 -0.24 5.87 -104.98 -0.62 -0.86 16 23 C -0.08 -0.69 9.72 -39.17 -0.38 -1.07 16 24 C -0.12 -0.77 10.03 -39.64 -0.40 -1.16 16 25 C -0.10 -0.55 10.04 -39.49 -0.40 -0.95 16 26 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 27 C -0.07 -0.56 9.69 -39.16 -0.38 -0.94 16 28 O -0.18 -2.31 7.79 2.85 0.02 -2.29 16 29 C 0.09 1.65 6.51 -3.06 -0.02 1.63 16 30 H 0.03 0.89 7.25 -51.93 -0.38 0.52 16 31 H 0.04 1.09 7.42 -51.93 -0.39 0.71 16 32 H 0.00 0.07 6.13 -51.93 -0.32 -0.24 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.93 6.23 -51.93 -0.32 0.61 16 38 H 0.20 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.13 1.00 7.89 -52.49 -0.41 0.59 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.14 1.11 7.82 -52.49 -0.41 0.70 16 44 H 0.08 1.71 7.06 -51.93 -0.37 1.34 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -31.55 375.37 -9.12 -40.67 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.83 Total: -0.38 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -3.43 Total: 6.82 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.60 Total: -56.47 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.11 Total: -12.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.55 -9.12 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971744646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.555 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds