Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21710 * 119.99681 * 179.97438 * 16 15 14 18 18 C 1.46576 * 120.00144 * 359.96705 * 16 15 14 19 19 C 1.36563 * 126.56254 * 179.71436 * 18 16 15 20 20 N 1.33312 * 107.65360 * 179.84108 * 19 18 16 21 21 C 1.31635 * 108.95367 * 0.43532 * 20 19 18 22 22 C 1.47704 * 125.54122 * 179.73230 * 21 20 19 23 23 C 1.39636 * 120.15157 * 179.71925 * 22 21 20 24 24 C 1.37948 * 119.84605 * 179.78608 * 23 22 21 25 25 C 1.38363 * 120.15100 * 0.49356 * 24 23 22 26 26 C 1.38374 * 120.30824 * 359.73856 * 25 24 23 27 27 C 1.37943 * 120.14925 * 0.02564 * 26 25 24 28 28 O 1.34203 * 108.91616 * 359.72583 * 21 20 19 29 29 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 30 30 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 31 31 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 32 32 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 33 33 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 34 34 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 35 35 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 36 36 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 37 37 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 38 38 H 1.08000 * 126.17402 * 359.97438 * 19 18 16 39 39 H 1.08002 * 120.07711 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.92383 * 180.23051 * 24 23 22 41 41 H 1.08000 * 119.84850 * 179.75988 * 25 24 23 42 42 H 1.07992 * 119.92472 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.07796 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.87950 * 120.47256 * 29 15 14 45 45 H 1.08993 * 109.88934 * 241.64504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1500 -4.3992 2.7427 18 6 1.3573 -5.9164 0.9909 19 6 1.0494 -7.0714 1.6515 20 7 1.1153 -8.0704 0.7712 21 6 1.4598 -7.5841 -0.4025 22 6 1.6447 -8.3724 -1.6378 23 6 2.0072 -7.7374 -2.8274 24 6 2.1825 -8.4804 -3.9764 25 6 1.9902 -9.8504 -3.9542 26 6 1.6263 -10.4856 -2.7800 27 6 1.4523 -9.7555 -1.6226 28 8 1.6155 -6.2555 -0.2942 29 6 1.8183 -2.1177 1.2322 30 1 -0.3634 0.0929 1.0234 31 1 -0.3634 0.8398 -0.5923 32 1 -0.3632 -0.9329 -0.4312 33 1 0.0108 3.0589 1.5212 34 1 2.3364 -1.9478 -2.0838 35 1 0.6843 -2.0464 -1.3869 36 1 3.1200 -3.8116 -0.7827 37 1 1.4446 -4.3227 -1.1476 38 1 0.7959 -7.1592 2.6976 39 1 2.1528 -6.6674 -2.8472 40 1 2.4665 -7.9910 -4.8963 41 1 2.1250 -10.4268 -4.8575 42 1 1.4782 -11.5552 -2.7696 43 1 1.1686 -10.2525 -0.7067 44 1 0.8541 -1.7932 1.6234 45 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971744646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 35.026459 kcal Electronic energy + Delta-G solvation = -28829.961257 eV Core-core repulsion = 24814.567774 eV Total energy + Delta-G solvation = -4015.393483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.57548 -41.12084 -39.95804 -39.04548 -36.73768 -36.08732 -33.68667 -33.33324 -31.93600 -31.50732 -30.61057 -29.34669 -28.08120 -26.22082 -24.96676 -24.34377 -23.88762 -22.96903 -22.26346 -21.39218 -20.89096 -19.03272 -18.95211 -18.45461 -18.18386 -17.47939 -17.09901 -16.92477 -16.53598 -16.30413 -15.71905 -15.54125 -15.18542 -15.04069 -14.70779 -14.65863 -14.49937 -14.36089 -14.17002 -13.88947 -13.81720 -13.44540 -13.16333 -12.81135 -12.72549 -12.59724 -12.43639 -12.42049 -12.26374 -12.23717 -12.08290 -11.92926 -11.82571 -11.58061 -11.42767 -10.91881 -10.66048 -9.95190 -9.92992 -9.38349 -8.84246 -7.85071 -5.36059 -0.78407 0.26757 0.42471 1.02916 1.40677 1.47444 1.49004 1.59425 1.77379 1.85341 2.50162 2.65910 2.82949 3.25290 3.35639 3.48843 3.67463 3.75421 3.91009 3.98540 4.01819 4.09554 4.22370 4.23393 4.28330 4.33185 4.37967 4.47510 4.54718 4.62071 4.73343 4.80789 4.83712 4.94931 4.98782 5.06039 5.09666 5.14095 5.23672 5.36161 5.37807 5.47066 5.53694 5.64259 5.67406 5.93612 6.16556 6.29480 6.34183 6.71092 7.10578 7.80696 8.26063 9.17886 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.002352 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.644081 B =11901.736981 C =13023.982984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.599 5.599 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.296 1.296 11 C 0.167 3.833 12 H 0.089 0.911 13 C -0.137 4.137 14 C 0.105 3.895 15 N -0.601 5.601 16 C 0.613 3.387 17 O -0.558 6.558 18 C -0.116 4.116 19 C 0.063 3.937 20 N -0.495 5.495 21 C 0.266 3.734 22 C -0.057 4.057 23 C -0.090 4.090 24 C -0.123 4.123 25 C -0.088 4.088 26 C -0.124 4.124 27 C -0.075 4.075 28 O -0.175 6.175 29 C 0.097 3.903 30 H -0.001 1.001 31 H 0.019 0.981 32 H 0.032 0.968 33 H 0.248 0.752 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.044 0.956 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -26.784 -13.665 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.395 4.395 4 H 0.098 0.902 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.185 1.185 9 H -0.219 1.219 10 H -0.224 1.224 11 C 0.058 3.942 12 H 0.107 0.893 13 C -0.176 4.176 14 C -0.016 4.016 15 N -0.332 5.332 16 C 0.401 3.599 17 O -0.439 6.439 18 C -0.171 4.171 19 C -0.082 4.082 20 N -0.223 5.223 21 C 0.065 3.935 22 C -0.059 4.059 23 C -0.109 4.109 24 C -0.141 4.141 25 C -0.106 4.106 26 C -0.142 4.142 27 C -0.094 4.094 28 O -0.062 6.062 29 C -0.027 4.027 30 H 0.017 0.983 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.229 0.771 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.177 0.823 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.063 0.937 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.167 -27.158 -12.893 30.351 hybrid contribution -0.058 2.180 0.801 2.324 sum 4.109 -24.978 -12.092 28.053 Atomic orbital electron populations 1.20490 0.83000 0.96011 0.97415 1.44119 1.01886 1.01032 1.84934 1.19643 0.99236 0.86123 1.34471 0.90162 1.25883 0.98763 1.02222 0.98030 1.70263 1.22231 1.27760 1.38152 0.85146 0.78107 0.79790 0.77022 1.18458 1.21938 1.22369 1.21637 0.96608 0.84635 0.91300 0.89289 1.23283 1.02641 0.92446 0.99245 1.22616 1.02165 0.98642 0.78197 1.48463 1.65658 1.06806 1.12297 1.16202 0.77680 0.81230 0.84761 1.90878 1.52648 1.84229 1.16173 1.22801 1.14992 0.96569 0.82726 1.23855 0.96985 0.85645 1.01682 1.70645 1.19908 1.32217 0.99530 1.24728 0.95319 0.78174 0.95315 1.17542 1.08412 0.92655 0.87247 1.21513 0.96716 1.01217 0.91490 1.21466 0.99673 0.94597 0.98356 1.21866 0.94818 0.94801 0.99134 1.21470 0.99436 1.01612 0.91652 1.21358 0.96613 0.91162 1.00272 1.84620 1.67295 1.25760 1.28569 1.22691 1.00662 0.79400 0.99989 0.98256 0.96254 0.94972 0.94284 0.87452 0.91318 0.88872 0.89129 0.77065 0.84458 0.82578 0.82303 0.82503 0.84706 0.93714 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.62 7.75 127.77 0.99 9.61 16 2 N -0.60 -28.79 2.93 -695.58 -2.04 -30.82 16 3 C -0.26 -13.94 9.59 84.04 0.81 -13.14 16 4 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 5 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 6 N -0.94 -55.60 10.83 21.65 0.23 -55.36 16 7 Si 0.97 44.25 29.58 68.60 2.03 46.28 16 8 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 9 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 11 C 0.17 6.31 3.45 46.28 0.16 6.47 16 12 H 0.09 3.22 7.93 -2.39 -0.02 3.20 16 13 C -0.14 -3.91 6.61 32.09 0.21 -3.70 16 14 C 0.11 2.66 6.18 86.86 0.54 3.20 16 15 N -0.60 -19.99 3.33 -816.61 -2.72 -22.71 16 16 C 0.61 21.34 7.82 86.42 0.68 22.02 16 17 O -0.56 -23.12 17.22 -4.38 -0.08 -23.20 16 18 C -0.12 -3.35 6.96 24.05 0.17 -3.18 16 19 C 0.06 1.67 11.64 84.08 0.98 2.65 16 20 N -0.49 -12.63 10.86 -304.10 -3.30 -15.93 16 21 C 0.27 6.23 7.88 87.23 0.69 6.92 16 22 C -0.06 -1.03 5.87 -20.10 -0.12 -1.14 16 23 C -0.09 -1.24 9.72 22.54 0.22 -1.02 16 24 C -0.12 -1.10 10.03 22.23 0.22 -0.87 16 25 C -0.09 -0.62 10.04 22.33 0.22 -0.39 16 26 C -0.12 -1.11 10.03 22.23 0.22 -0.89 16 27 C -0.07 -1.09 9.69 22.54 0.22 -0.87 16 28 O -0.18 -4.38 7.79 -12.70 -0.10 -4.48 16 29 C 0.10 3.82 6.51 86.73 0.56 4.39 16 30 H 0.00 -0.05 7.25 -2.39 -0.02 -0.07 16 31 H 0.02 1.00 7.42 -2.39 -0.02 0.98 16 32 H 0.03 1.36 6.13 -2.39 -0.01 1.34 16 33 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.14 6.15 -2.39 -0.01 2.12 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.05 6.23 -2.39 -0.01 2.04 16 38 H 0.21 4.83 8.06 -2.91 -0.02 4.80 16 39 H 0.14 1.70 7.89 -2.91 -0.02 1.68 16 40 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 42 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.14 2.00 7.82 -2.91 -0.02 1.98 16 44 H 0.04 2.06 7.06 -2.39 -0.02 2.04 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.26 375.37 2.25 -69.01 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.01 Total: 9.68 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 7.20 Total: 27.53 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -7.82 Total: -124.83 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.17 Total: -27.68 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.26 2.25 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971744646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.039 kcal (2) G-P(sol) polarization free energy of solvation -71.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds