Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99975 * 2 1 4 4 H 1.07995 * 119.99988 * 204.92421 * 3 2 1 5 5 C 1.38810 * 119.99735 * 24.92536 * 3 2 1 6 6 N 1.31618 * 120.00287 * 5.40739 * 5 3 2 7 7 Si 1.86797 * 119.99701 * 185.41301 * 5 3 2 8 8 H 1.48496 * 109.47313 * 89.99975 * 7 5 3 9 9 H 1.48503 * 109.47141 * 209.99728 * 7 5 3 10 10 H 1.48504 * 109.47198 * 329.99466 * 7 5 3 11 11 C 1.46504 * 120.00097 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.77570 * 178.22099 * 11 2 1 13 13 C 1.55151 * 110.71978 * 54.97789 * 11 2 1 14 14 C 1.55131 * 101.48535 * 205.97173 * 13 11 2 15 15 N 1.47419 * 104.72526 * 37.29384 * 14 13 11 16 16 C 1.34780 * 125.65072 * 155.81689 * 15 14 13 17 17 O 1.21510 * 120.00060 * 185.72811 * 16 15 14 18 18 C 1.48151 * 119.99712 * 5.72900 * 16 15 14 19 19 C 1.40030 * 120.86563 * 204.08522 * 18 16 15 20 20 C 1.38142 * 119.26943 * 180.27810 * 19 18 16 21 21 N 1.31719 * 121.06301 * 359.75056 * 20 19 18 22 22 C 1.32816 * 121.90056 * 359.97438 * 21 20 19 23 23 C 1.47661 * 119.69733 * 180.02562 * 22 21 20 24 24 C 1.36029 * 125.93647 * 359.69454 * 23 22 21 25 25 C 1.40836 * 106.73703 * 179.85392 * 24 23 22 26 26 C 1.34811 * 107.04216 * 0.40966 * 25 24 23 27 27 O 1.34231 * 108.68412 * 359.74570 * 26 25 24 28 28 C 1.39472 * 120.86387 * 23.86732 * 18 16 15 29 29 C 1.47023 * 108.70110 * 335.55640 * 15 14 13 30 30 H 1.08994 * 109.47830 * 275.06614 * 1 2 3 31 31 H 1.09002 * 109.47365 * 35.07426 * 1 2 3 32 32 H 1.09003 * 109.47038 * 155.06843 * 1 2 3 33 33 H 0.96998 * 120.00318 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00477 * 324.21127 * 13 11 2 35 35 H 1.09003 * 111.00599 * 88.02567 * 13 11 2 36 36 H 1.09004 * 110.49200 * 278.45507 * 14 13 11 37 37 H 1.08997 * 110.34130 * 156.06032 * 14 13 11 38 38 H 1.08003 * 120.36271 * 0.02562 * 19 18 16 39 39 H 1.07990 * 119.47024 * 179.77011 * 20 19 18 40 40 H 1.07997 * 126.63332 * 359.97438 * 24 23 22 41 41 H 1.07995 * 126.47777 * 180.13410 * 25 24 23 42 42 H 1.07991 * 125.65633 * 179.76546 * 26 25 24 43 43 H 1.08006 * 120.55789 * 359.97438 * 28 18 16 44 44 H 1.08998 * 109.88300 * 120.70198 * 29 15 14 45 45 H 1.08997 * 109.88447 * 241.86619 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1542 1.2295 -0.3941 5 6 1.5525 2.3320 0.5066 6 7 0.3717 2.2590 1.0834 7 14 2.4249 3.9781 0.3698 8 1 2.0383 4.6389 -0.9026 9 1 2.0357 4.8412 1.5138 10 1 3.8941 3.7629 0.3894 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0943 -0.0311 13 6 1.7508 -2.1611 -1.1874 14 6 2.0692 -3.5793 -0.6453 15 7 1.7324 -3.5167 0.7885 16 6 1.4056 -4.5685 1.5653 17 8 1.0448 -4.3884 2.7115 18 6 1.4863 -5.9443 1.0216 19 6 0.7184 -6.9793 1.5691 20 6 0.8238 -8.2511 1.0401 21 7 1.6296 -8.5019 0.0288 22 6 2.3737 -7.5529 -0.5278 23 6 3.2602 -7.8883 -1.6601 24 6 3.4106 -9.1193 -2.2189 25 6 4.3448 -8.9792 -3.2634 26 6 4.7220 -7.6852 -3.2852 27 8 4.0650 -7.0294 -2.3156 28 6 2.3259 -6.2413 -0.0518 29 6 1.8182 -2.1177 1.2323 30 1 -0.3634 0.0907 1.0235 31 1 -0.3634 0.8410 -0.5905 32 1 -0.3633 -0.9319 -0.4332 33 1 -0.0458 3.0599 1.4370 34 1 0.6850 -2.0446 -1.3844 35 1 2.3369 -1.9448 -2.0806 36 1 3.1264 -3.8097 -0.7770 37 1 1.4522 -4.3243 -1.1478 38 1 0.0540 -6.7863 2.3985 39 1 0.2358 -9.0525 1.4622 40 1 2.9089 -10.0280 -1.9206 41 1 4.6961 -9.7616 -3.9197 42 1 5.4344 -7.2486 -3.9694 43 1 2.9316 -5.4703 -0.5048 44 1 0.8540 -1.7931 1.6235 45 1 2.5847 -2.0189 2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971757199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = 66.439532 kcal Electronic energy + Delta-G solvation = -29057.956091 eV Core-core repulsion = 25043.924781 eV Total energy + Delta-G solvation = -4014.031310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84918 -40.79906 -39.33739 -37.49676 -34.95656 -33.60814 -32.90477 -32.61489 -31.51858 -29.82754 -28.98099 -27.99738 -26.09859 -25.35728 -24.07620 -23.29385 -22.43764 -21.73107 -21.34828 -19.81842 -19.26709 -18.13539 -17.14703 -17.09043 -16.65131 -16.40586 -16.17295 -16.01141 -15.49277 -14.99565 -14.87563 -14.36762 -14.19058 -13.80368 -13.49510 -13.36246 -13.23400 -13.12949 -12.83001 -12.73256 -12.60391 -12.25361 -12.16118 -11.93067 -11.45813 -10.91618 -10.88159 -10.62067 -10.47849 -10.42957 -10.35511 -10.31012 -10.15481 -9.98422 -9.90756 -9.84031 -9.67900 -8.61571 -8.46643 -8.36872 -6.84903 -5.79794 -3.30833 0.23677 0.58756 1.62574 2.32292 2.37948 2.85501 2.99210 3.34085 3.40198 3.41803 3.60714 3.98082 4.15105 4.37532 4.42692 4.60825 4.67335 4.71815 4.77284 4.91458 5.00948 5.16152 5.18780 5.29176 5.38614 5.42236 5.50932 5.53826 5.63448 5.68926 5.71784 5.79864 5.86100 5.92043 6.14061 6.22634 6.26524 6.28562 6.42301 6.58029 6.73436 6.78579 6.80670 7.34503 7.49354 7.60745 7.69946 7.75861 8.14718 8.32255 9.15361 9.75835 10.25369 11.24022 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002623 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.037989 B =10671.480614 C =12054.005940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.094 3.906 15 N -0.602 5.602 16 C 0.565 3.435 17 O -0.531 6.531 18 C -0.070 4.070 19 C -0.117 4.117 20 C 0.107 3.893 21 N -0.459 5.459 22 C 0.195 3.805 23 C 0.016 3.984 24 C -0.151 4.151 25 C -0.221 4.221 26 C -0.020 4.020 27 O -0.167 6.167 28 C -0.133 4.133 29 C 0.086 3.914 30 H 0.031 0.969 31 H 0.047 0.953 32 H -0.001 1.001 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.209 0.791 43 H 0.156 0.844 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -22.782 -7.777 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.739 3.261 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.029 4.029 15 N -0.335 5.335 16 C 0.352 3.648 17 O -0.408 6.408 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.051 4.051 21 N -0.170 5.170 22 C 0.059 3.941 23 C -0.034 4.034 24 C -0.172 4.172 25 C -0.240 4.240 26 C -0.089 4.089 27 O -0.062 6.062 28 C -0.153 4.153 29 C -0.038 4.038 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.225 0.775 43 H 0.174 0.826 44 H 0.095 0.905 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.874 -23.034 -7.275 24.643 hybrid contribution 0.382 1.526 0.241 1.592 sum 5.256 -21.508 -7.034 23.231 Atomic orbital electron populations 1.20845 0.82288 0.95544 0.99640 1.43899 1.01958 0.99810 1.84949 1.19225 0.99544 0.85729 1.34707 0.91162 1.25163 0.97272 0.98917 0.97887 1.70055 1.15822 1.27824 1.41252 0.86196 0.79109 0.83640 0.77201 1.21397 1.21612 1.20392 1.21371 0.96509 0.85982 0.89880 0.90169 1.23437 1.03068 0.92752 1.00130 1.22701 0.99707 0.99639 0.80851 1.48457 1.66332 1.08015 1.10653 1.17788 0.78401 0.83297 0.85318 1.90795 1.46912 1.85352 1.17746 1.20380 0.97265 0.94839 0.95649 1.22410 0.98557 0.92669 1.00077 1.22678 0.95048 0.95809 0.91578 1.67289 1.05157 1.35079 1.09441 1.18129 0.94056 0.89192 0.92690 1.19659 0.97911 0.88562 0.97274 1.21897 1.00446 0.97850 0.96986 1.21865 1.02397 0.97432 1.02315 1.24265 0.99463 0.92282 0.92905 1.84039 1.45288 1.38257 1.38652 1.22853 0.99043 0.97719 0.95708 1.23043 1.02734 0.77959 1.00074 0.95025 0.93415 0.98252 0.93535 0.90201 0.90141 0.91059 0.90954 0.83142 0.81236 0.82536 0.82952 0.77458 0.82621 0.90465 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.71 59.85 0.46 4.32 16 2 N -0.59 -13.97 2.93 -171.39 -0.50 -14.48 16 3 C -0.26 -6.91 9.62 -15.06 -0.14 -7.05 16 4 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 5 C 0.01 0.18 5.24 -17.43 -0.09 0.09 16 6 N -0.91 -25.85 10.44 55.49 0.58 -25.27 16 7 Si 0.91 21.30 29.56 -169.99 -5.02 16.28 16 8 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.17 3.31 3.44 -66.10 -0.23 3.08 16 12 H 0.08 1.49 7.95 -51.93 -0.41 1.08 16 13 C -0.15 -2.36 6.60 -24.47 -0.16 -2.52 16 14 C 0.09 1.23 5.01 -2.41 -0.01 1.22 16 15 N -0.60 -9.75 3.32 -171.38 -0.57 -10.32 16 16 C 0.56 9.37 7.68 -12.19 -0.09 9.28 16 17 O -0.53 -10.59 17.02 5.36 0.09 -10.50 16 18 C -0.07 -0.94 5.70 -104.70 -0.60 -1.53 16 19 C -0.12 -1.30 9.68 -38.95 -0.38 -1.68 16 20 C 0.11 1.02 11.16 -17.64 -0.20 0.83 16 21 N -0.46 -5.20 10.02 -9.92 -0.10 -5.30 16 22 C 0.20 2.31 6.74 -83.08 -0.56 1.75 16 23 C 0.02 0.18 7.03 -36.53 -0.26 -0.08 16 24 C -0.15 -1.47 10.58 -39.39 -0.42 -1.89 16 25 C -0.22 -1.71 10.89 -39.81 -0.43 -2.14 16 26 C -0.02 -0.15 12.08 29.52 0.36 0.21 16 27 O -0.17 -1.72 10.39 4.73 0.05 -1.67 16 28 C -0.13 -1.60 7.83 -38.61 -0.30 -1.91 16 29 C 0.09 1.63 6.51 -3.06 -0.02 1.61 16 30 H 0.03 0.84 7.27 -51.93 -0.38 0.46 16 31 H 0.05 1.23 7.26 -51.93 -0.38 0.86 16 32 H 0.00 -0.02 6.12 -51.93 -0.32 -0.34 16 33 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.32 6.14 -51.93 -0.32 1.00 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.80 6.88 -51.93 -0.36 0.44 16 37 H 0.07 0.86 6.81 -51.93 -0.35 0.50 16 38 H 0.15 1.55 7.91 -52.48 -0.42 1.14 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.16 1.75 4.52 -52.48 -0.24 1.51 16 44 H 0.08 1.69 7.06 -51.93 -0.37 1.33 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -32.48 371.07 -8.57 -41.06 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.62 Total: 1.02 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -3.07 Total: 3.58 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.59 Total: -55.37 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.14 Total: -12.17 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.48 -8.57 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971757199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.498 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds