Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99975 * 2 1 4 4 H 1.07995 * 119.99988 * 204.92421 * 3 2 1 5 5 C 1.38810 * 119.99735 * 24.92536 * 3 2 1 6 6 N 1.31618 * 120.00287 * 5.40739 * 5 3 2 7 7 Si 1.86797 * 119.99701 * 185.41301 * 5 3 2 8 8 H 1.48496 * 109.47313 * 89.99975 * 7 5 3 9 9 H 1.48503 * 109.47141 * 209.99728 * 7 5 3 10 10 H 1.48504 * 109.47198 * 329.99466 * 7 5 3 11 11 C 1.46504 * 120.00097 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.77570 * 178.22099 * 11 2 1 13 13 C 1.55151 * 110.71978 * 54.97789 * 11 2 1 14 14 C 1.55131 * 101.48535 * 205.97173 * 13 11 2 15 15 N 1.47419 * 104.72526 * 37.29384 * 14 13 11 16 16 C 1.34780 * 125.65072 * 155.81689 * 15 14 13 17 17 O 1.21510 * 120.00060 * 185.72811 * 16 15 14 18 18 C 1.48151 * 119.99712 * 5.72900 * 16 15 14 19 19 C 1.40030 * 120.86563 * 204.08522 * 18 16 15 20 20 C 1.38142 * 119.26943 * 180.27810 * 19 18 16 21 21 N 1.31719 * 121.06301 * 359.75056 * 20 19 18 22 22 C 1.32816 * 121.90056 * 359.97438 * 21 20 19 23 23 C 1.47661 * 119.69733 * 180.02562 * 22 21 20 24 24 C 1.36029 * 125.93647 * 359.69454 * 23 22 21 25 25 C 1.40836 * 106.73703 * 179.85392 * 24 23 22 26 26 C 1.34811 * 107.04216 * 0.40966 * 25 24 23 27 27 O 1.34231 * 108.68412 * 359.74570 * 26 25 24 28 28 C 1.39472 * 120.86387 * 23.86732 * 18 16 15 29 29 C 1.47023 * 108.70110 * 335.55640 * 15 14 13 30 30 H 1.08994 * 109.47830 * 275.06614 * 1 2 3 31 31 H 1.09002 * 109.47365 * 35.07426 * 1 2 3 32 32 H 1.09003 * 109.47038 * 155.06843 * 1 2 3 33 33 H 0.96998 * 120.00318 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00477 * 324.21127 * 13 11 2 35 35 H 1.09003 * 111.00599 * 88.02567 * 13 11 2 36 36 H 1.09004 * 110.49200 * 278.45507 * 14 13 11 37 37 H 1.08997 * 110.34130 * 156.06032 * 14 13 11 38 38 H 1.08003 * 120.36271 * 0.02562 * 19 18 16 39 39 H 1.07990 * 119.47024 * 179.77011 * 20 19 18 40 40 H 1.07997 * 126.63332 * 359.97438 * 24 23 22 41 41 H 1.07995 * 126.47777 * 180.13410 * 25 24 23 42 42 H 1.07991 * 125.65633 * 179.76546 * 26 25 24 43 43 H 1.08006 * 120.55789 * 359.97438 * 28 18 16 44 44 H 1.08998 * 109.88300 * 120.70198 * 29 15 14 45 45 H 1.08997 * 109.88447 * 241.86619 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1542 1.2295 -0.3941 5 6 1.5525 2.3320 0.5066 6 7 0.3717 2.2590 1.0834 7 14 2.4249 3.9781 0.3698 8 1 2.0383 4.6389 -0.9026 9 1 2.0357 4.8412 1.5138 10 1 3.8941 3.7629 0.3894 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0943 -0.0311 13 6 1.7508 -2.1611 -1.1874 14 6 2.0692 -3.5793 -0.6453 15 7 1.7324 -3.5167 0.7885 16 6 1.4056 -4.5685 1.5653 17 8 1.0448 -4.3884 2.7115 18 6 1.4863 -5.9443 1.0216 19 6 0.7184 -6.9793 1.5691 20 6 0.8238 -8.2511 1.0401 21 7 1.6296 -8.5019 0.0288 22 6 2.3737 -7.5529 -0.5278 23 6 3.2602 -7.8883 -1.6601 24 6 3.4106 -9.1193 -2.2189 25 6 4.3448 -8.9792 -3.2634 26 6 4.7220 -7.6852 -3.2852 27 8 4.0650 -7.0294 -2.3156 28 6 2.3259 -6.2413 -0.0518 29 6 1.8182 -2.1177 1.2323 30 1 -0.3634 0.0907 1.0235 31 1 -0.3634 0.8410 -0.5905 32 1 -0.3633 -0.9319 -0.4332 33 1 -0.0458 3.0599 1.4370 34 1 0.6850 -2.0446 -1.3844 35 1 2.3369 -1.9448 -2.0806 36 1 3.1264 -3.8097 -0.7770 37 1 1.4522 -4.3243 -1.1478 38 1 0.0540 -6.7863 2.3985 39 1 0.2358 -9.0525 1.4622 40 1 2.9089 -10.0280 -1.9206 41 1 4.6961 -9.7616 -3.9197 42 1 5.4344 -7.2486 -3.9694 43 1 2.9316 -5.4703 -0.5048 44 1 0.8540 -1.7931 1.6235 45 1 2.5847 -2.0189 2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971757199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 46.486883 kcal Electronic energy + Delta-G solvation = -29058.821303 eV Core-core repulsion = 25043.924781 eV Total energy + Delta-G solvation = -4014.896522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49972 -41.86797 -40.48601 -38.96842 -36.68154 -34.46785 -33.91442 -33.41756 -33.10136 -31.32650 -29.83323 -29.33087 -28.09313 -26.54906 -24.98473 -24.68877 -23.79476 -22.48861 -22.14586 -20.96835 -20.71224 -19.07245 -18.98745 -18.14055 -17.57706 -17.54600 -17.08474 -17.07068 -16.74310 -16.44690 -15.96661 -15.70285 -15.11093 -15.04008 -15.00203 -14.77510 -14.45202 -14.13034 -13.88209 -13.81531 -13.79239 -13.40868 -13.38166 -13.25655 -12.90873 -12.75287 -12.46488 -12.39215 -12.25221 -12.12162 -11.82322 -11.56600 -11.48714 -11.23325 -10.97735 -10.70034 -10.65841 -10.63018 -9.83190 -9.08063 -8.81925 -7.84315 -5.37495 -0.62006 -0.31377 0.92842 1.47769 1.48742 1.56383 1.57740 1.70008 1.73621 1.80914 2.49553 2.72120 3.06515 3.28875 3.34286 3.47516 3.55758 3.73130 3.79423 3.85976 3.96242 4.12087 4.16348 4.20594 4.24295 4.27986 4.35150 4.49715 4.54352 4.60458 4.74788 4.80759 4.85362 4.91540 4.95931 5.03766 5.11232 5.14544 5.17840 5.26574 5.39046 5.41085 5.57619 5.64068 5.71360 6.09184 6.30771 6.31712 6.67932 6.83524 7.12355 7.81317 8.26971 9.18475 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002623 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.037989 B =10671.480614 C =12054.005940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.973 3.027 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.167 3.833 12 H 0.089 0.911 13 C -0.140 4.140 14 C 0.100 3.900 15 N -0.602 5.602 16 C 0.563 3.437 17 O -0.575 6.575 18 C -0.084 4.084 19 C -0.121 4.121 20 C 0.119 3.881 21 N -0.468 5.468 22 C 0.192 3.808 23 C -0.017 4.017 24 C -0.152 4.152 25 C -0.231 4.231 26 C -0.011 4.011 27 O -0.181 6.181 28 C -0.134 4.134 29 C 0.097 3.903 30 H -0.004 1.004 31 H 0.022 0.978 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.155 0.845 39 H 0.209 0.791 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.247 0.753 43 H 0.163 0.837 44 H 0.040 0.960 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -25.102 -10.213 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.248 4.248 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.211 1.211 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.334 5.334 16 C 0.352 3.648 17 O -0.455 6.455 18 C -0.095 4.095 19 C -0.142 4.142 20 C -0.038 4.038 21 N -0.179 5.179 22 C 0.057 3.943 23 C -0.067 4.067 24 C -0.173 4.173 25 C -0.250 4.250 26 C -0.079 4.079 27 O -0.076 6.076 28 C -0.154 4.154 29 C -0.028 4.028 30 H 0.015 0.985 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.173 0.827 39 H 0.225 0.775 40 H 0.177 0.823 41 H 0.195 0.805 42 H 0.263 0.737 43 H 0.180 0.820 44 H 0.059 0.941 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.867 -25.404 -9.758 28.066 hybrid contribution -0.166 2.078 0.936 2.285 sum 6.701 -23.326 -8.822 25.823 Atomic orbital electron populations 1.20476 0.82971 0.95708 0.97201 1.44071 1.01890 1.01039 1.85264 1.19642 0.99802 0.86678 1.33381 0.90098 1.25963 0.98087 1.02404 0.98370 1.70251 1.17433 1.28094 1.42989 0.85175 0.78664 0.79441 0.76584 1.21076 1.22656 1.18904 1.21572 0.96578 0.84615 0.91375 0.89259 1.23311 1.02601 0.92803 0.99283 1.22895 1.01885 0.98710 0.78652 1.48467 1.66229 1.06693 1.12030 1.18331 0.77175 0.84512 0.84758 1.90763 1.48899 1.86189 1.19697 1.20136 0.99252 0.93119 0.96998 1.22578 0.98422 0.92929 1.00242 1.23254 0.94178 0.95959 0.90431 1.67392 1.05465 1.35072 1.09921 1.18325 0.94041 0.89042 0.92882 1.19685 0.99373 0.89339 0.98262 1.22149 1.00413 0.97544 0.97170 1.22205 1.02058 0.98445 1.02245 1.25131 0.98555 0.92321 0.91862 1.84030 1.45540 1.38724 1.39329 1.22815 0.98966 0.98227 0.95378 1.22624 1.00304 0.80074 0.99806 0.98542 0.95970 0.95509 0.94319 0.91431 0.87614 0.88148 0.88941 0.82733 0.77468 0.82254 0.80538 0.73704 0.81963 0.94147 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.71 127.77 0.99 10.00 16 2 N -0.60 -29.06 2.93 -696.16 -2.04 -31.10 16 3 C -0.27 -14.00 9.62 84.03 0.81 -13.19 16 4 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 5 C -0.05 -2.94 5.24 84.86 0.44 -2.49 16 6 N -0.94 -55.85 10.44 21.65 0.23 -55.63 16 7 Si 0.97 44.32 29.56 68.60 2.03 46.34 16 8 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 C 0.17 6.30 3.44 46.18 0.16 6.46 16 12 H 0.09 3.20 7.95 -2.39 -0.02 3.18 16 13 C -0.14 -4.00 6.60 32.06 0.21 -3.79 16 14 C 0.10 2.39 5.01 86.93 0.44 2.82 16 15 N -0.60 -19.33 3.32 -814.42 -2.71 -22.03 16 16 C 0.56 18.84 7.68 86.88 0.67 19.51 16 17 O -0.57 -23.82 17.02 -3.75 -0.06 -23.88 16 18 C -0.08 -2.18 5.70 -19.91 -0.11 -2.29 16 19 C -0.12 -2.58 9.68 22.68 0.22 -2.36 16 20 C 0.12 2.03 11.16 84.69 0.95 2.97 16 21 N -0.47 -9.66 10.02 -185.29 -1.86 -11.52 16 22 C 0.19 4.23 6.74 41.82 0.28 4.51 16 23 C -0.02 -0.34 7.03 24.25 0.17 -0.17 16 24 C -0.15 -2.63 10.58 22.39 0.24 -2.39 16 25 C -0.23 -2.84 10.89 22.12 0.24 -2.60 16 26 C -0.01 -0.12 12.08 67.03 0.81 0.69 16 27 O -0.18 -3.23 10.39 -5.99 -0.06 -3.29 16 28 C -0.13 -3.01 7.83 22.90 0.18 -2.83 16 29 C 0.10 3.79 6.51 86.73 0.56 4.35 16 30 H 0.00 -0.21 7.27 -2.39 -0.02 -0.23 16 31 H 0.02 1.18 7.26 -2.39 -0.02 1.16 16 32 H 0.03 1.15 6.12 -2.39 -0.01 1.14 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.07 2.12 6.14 -2.39 -0.01 2.10 16 35 H 0.11 2.53 8.14 -2.39 -0.02 2.52 16 36 H 0.10 1.90 6.88 -2.39 -0.02 1.88 16 37 H 0.09 1.92 6.81 -2.39 -0.02 1.91 16 38 H 0.15 3.11 7.91 -2.91 -0.02 3.08 16 39 H 0.21 1.78 8.06 -2.92 -0.02 1.76 16 40 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.25 0.55 8.06 -2.92 -0.02 0.52 16 43 H 0.16 3.27 4.52 -2.91 -0.01 3.26 16 44 H 0.04 1.87 7.06 -2.39 -0.02 1.85 16 45 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.07 371.07 3.79 -70.28 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.03 Total: 11.63 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 7.25 Total: 19.21 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -6.38 Total: -120.28 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.13 Total: -27.18 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.07 3.79 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971757199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.762 kcal (2) G-P(sol) polarization free energy of solvation -74.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds