Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00486 * 2 1 4 4 H 1.07992 * 120.00714 * 154.77763 * 3 2 1 5 5 C 1.38818 * 119.99471 * 334.77770 * 3 2 1 6 6 N 1.31615 * 120.00049 * 4.37778 * 5 3 2 7 7 Si 1.86797 * 119.99662 * 184.37486 * 5 3 2 8 8 H 1.48503 * 109.47143 * 90.00349 * 7 5 3 9 9 H 1.48500 * 109.47016 * 209.99788 * 7 5 3 10 10 H 1.48495 * 109.47473 * 329.99909 * 7 5 3 11 11 C 1.46499 * 120.00119 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.64870 * 180.69848 * 11 2 1 13 13 C 1.55156 * 110.72054 * 57.55419 * 11 2 1 14 14 C 1.54914 * 101.58281 * 206.13701 * 13 11 2 15 15 N 1.47427 * 104.82850 * 37.01289 * 14 13 11 16 16 C 1.34776 * 125.64418 * 155.91529 * 15 14 13 17 17 O 1.21597 * 119.99487 * 176.61979 * 16 15 14 18 18 C 1.47585 * 120.00257 * 356.61686 * 16 15 14 19 19 C 1.39817 * 120.00144 * 212.71068 * 18 16 15 20 20 C 1.36577 * 120.00100 * 179.76196 * 19 18 16 21 21 C 1.39804 * 119.99861 * 0.51665 * 20 19 18 22 22 C 1.47589 * 120.00085 * 179.71500 * 21 20 19 23 23 C 1.35939 * 126.59822 * 0.02564 * 22 21 20 24 24 N 1.34026 * 107.49833 * 179.97438 * 23 22 21 25 25 C 1.30420 * 108.93064 * 359.97438 * 24 23 22 26 26 O 1.33938 * 109.06192 * 359.73424 * 25 24 23 27 27 C 1.39808 * 120.00464 * 359.73871 * 21 20 19 28 28 C 1.36584 * 119.99784 * 0.02562 * 27 21 20 29 29 C 1.47314 * 108.73823 * 335.70889 * 15 14 13 30 30 H 1.08997 * 109.47353 * 84.56081 * 1 2 3 31 31 H 1.09002 * 109.46920 * 324.56353 * 1 2 3 32 32 H 1.08997 * 109.47067 * 204.56657 * 1 2 3 33 33 H 0.97005 * 120.00260 * 180.02562 * 6 5 3 34 34 H 1.09007 * 111.00348 * 324.20820 * 13 11 2 35 35 H 1.08998 * 111.00593 * 88.06160 * 13 11 2 36 36 H 1.09003 * 110.36388 * 155.84170 * 14 13 11 37 37 H 1.08991 * 110.36833 * 278.17242 * 14 13 11 38 38 H 1.08002 * 120.00055 * 0.02562 * 19 18 16 39 39 H 1.07994 * 120.00356 * 180.23118 * 20 19 18 40 40 H 1.08004 * 126.25047 * 359.97438 * 23 22 21 41 41 H 1.07996 * 125.47356 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.00339 * 179.97438 * 27 21 20 43 43 H 1.08001 * 120.00029 * 179.97438 * 28 27 21 44 44 H 1.08991 * 110.07239 * 241.87832 * 29 15 14 45 45 H 1.09005 * 109.84872 * 120.61430 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1525 1.2305 0.3985 5 6 1.5549 2.3307 -0.5123 6 7 0.3035 2.2967 -0.9186 7 14 2.5307 3.9196 -0.6250 8 1 3.2162 3.9873 -1.9406 9 1 1.6101 5.0767 -0.4865 10 1 3.5412 3.9582 0.4624 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0916 0.0119 13 6 1.7977 -2.1329 -1.2256 14 6 2.0901 -3.5628 -0.7063 15 7 1.7029 -3.5342 0.7159 16 6 1.3467 -4.6038 1.4545 17 8 1.1048 -4.4714 2.6388 18 6 1.2501 -5.9356 0.8260 19 6 0.3029 -6.8571 1.2826 20 6 0.2103 -8.0878 0.6977 21 6 1.0699 -8.4302 -0.3503 22 6 0.9740 -9.7624 -0.9782 23 6 0.1053 -10.7540 -0.6467 24 7 0.3506 -11.7925 -1.4576 25 6 1.3255 -11.4780 -2.2648 26 8 1.7282 -10.2287 -1.9983 27 6 2.0207 -7.5108 -0.8034 28 6 2.1101 -6.2782 -0.2217 29 6 1.7744 -2.1440 1.1980 30 1 -0.3634 0.0974 -1.0230 31 1 -0.3633 0.8373 0.5959 32 1 -0.3633 -0.9346 0.4272 33 1 -0.1121 3.0966 -1.2770 34 1 0.7404 -2.0114 -1.4611 35 1 2.4185 -1.8965 -2.0898 36 1 1.4896 -4.2934 -1.2483 37 1 3.1507 -3.7931 -0.8062 38 1 -0.3585 -6.5942 2.0949 39 1 -0.5239 -8.7983 1.0478 40 1 -0.6455 -10.7126 0.1286 41 1 1.7385 -12.1199 -3.0288 42 1 2.6850 -7.7754 -1.6127 43 1 2.8449 -5.5681 -0.5714 44 1 2.5127 -2.0622 1.9956 45 1 0.7966 -1.8275 1.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971801002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 61.479947 kcal Electronic energy + Delta-G solvation = -28490.172595 eV Core-core repulsion = 24475.926221 eV Total energy + Delta-G solvation = -4014.246374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.70928 -40.50019 -38.83616 -37.38190 -35.22939 -34.91172 -33.09955 -31.78816 -31.41332 -29.89149 -29.31350 -27.74974 -26.09731 -25.08891 -23.80421 -23.34673 -22.55086 -22.00042 -21.56661 -19.89228 -19.23889 -18.44145 -17.32819 -17.12030 -17.00898 -16.60422 -16.15505 -15.87008 -15.14505 -14.82004 -14.56926 -14.43262 -14.22525 -13.90463 -13.77195 -13.46239 -13.31720 -13.21499 -12.81513 -12.60825 -12.37021 -12.29234 -11.84564 -11.79291 -11.63840 -11.27664 -11.03192 -10.89415 -10.83417 -10.62797 -10.41542 -10.35537 -10.23602 -9.94786 -9.93393 -9.81699 -9.44606 -8.57721 -8.55361 -8.36942 -6.84932 -5.80901 -3.29044 0.01080 1.03958 1.37192 2.21060 2.25940 2.80362 3.06347 3.33924 3.40555 3.41620 3.55560 3.76946 4.15262 4.36948 4.41661 4.50760 4.53104 4.57778 4.87798 4.97416 4.98502 5.15607 5.19788 5.25465 5.36804 5.39969 5.46448 5.49950 5.62689 5.70760 5.82277 5.84755 5.92144 5.94499 6.00085 6.04018 6.23880 6.32339 6.39412 6.49958 6.59177 6.80152 6.82076 7.21682 7.43382 7.63937 7.71082 7.79769 8.21056 8.33973 9.17091 9.76921 10.26298 11.23460 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026455 B = 0.002020 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.145344 B =13860.418074 C =14318.570166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.590 5.590 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.093 3.907 15 N -0.603 5.603 16 C 0.564 3.436 17 O -0.540 6.540 18 C -0.108 4.108 19 C -0.060 4.060 20 C -0.100 4.100 21 C -0.003 4.003 22 C -0.001 4.001 23 C -0.020 4.020 24 N -0.487 5.487 25 C 0.174 3.826 26 O -0.197 6.197 27 C -0.104 4.104 28 C -0.091 4.091 29 C 0.086 3.914 30 H 0.027 0.973 31 H 0.055 0.945 32 H -0.005 1.005 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.188 0.812 41 H 0.252 0.748 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 -24.863 -3.114 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.030 4.030 15 N -0.336 5.336 16 C 0.353 3.647 17 O -0.418 6.418 18 C -0.111 4.111 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.004 4.004 22 C -0.054 4.054 23 C -0.160 4.160 24 N -0.215 5.215 25 C -0.051 4.051 26 O -0.083 6.083 27 C -0.122 4.122 28 C -0.109 4.109 29 C -0.038 4.038 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.205 0.795 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.082 0.918 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.911 -25.189 -2.535 25.388 hybrid contribution 0.799 1.364 -0.337 1.616 sum 2.710 -23.825 -2.871 24.150 Atomic orbital electron populations 1.20890 0.82155 0.95597 0.99446 1.43875 1.02026 0.99790 1.85350 1.19227 0.99217 0.86158 1.34400 0.91155 1.25162 0.96494 0.98847 0.98609 1.70094 1.10979 1.28120 1.45956 0.86219 0.79224 0.82905 0.77984 1.21324 1.21667 1.20463 1.21307 0.96401 0.86020 0.90021 0.90244 1.23414 1.03036 0.92452 1.00336 1.22662 0.99271 0.99805 0.81277 1.48485 1.65410 1.07823 1.11877 1.17867 0.77679 0.83265 0.85913 1.90802 1.50693 1.85391 1.14929 1.20165 0.98535 0.94891 0.97489 1.20888 0.96839 0.91787 0.98394 1.20728 0.98820 0.97067 0.95222 1.17782 0.97886 0.88577 0.96180 1.21481 0.95632 0.96365 0.91969 1.23389 1.01845 0.88802 1.01933 1.70353 1.15058 1.29377 1.06681 1.28193 0.94003 0.82261 1.00655 1.84483 1.51784 1.29424 1.42625 1.20947 0.97975 0.93061 1.00245 1.21418 0.98581 0.96778 0.94114 1.22910 1.02594 0.78985 0.99328 0.95484 0.92662 0.98687 0.93608 0.90485 0.90213 0.90757 0.91292 0.84066 0.84651 0.79504 0.73199 0.84839 0.83932 0.91798 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 7.59 59.85 0.45 4.38 16 2 N -0.59 -14.05 2.94 -171.39 -0.50 -14.55 16 3 C -0.26 -6.85 9.61 -15.06 -0.14 -7.00 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 5 C 0.01 0.20 5.39 -17.43 -0.09 0.10 16 6 N -0.91 -25.56 10.11 55.49 0.56 -25.00 16 7 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16 8 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.17 3.28 3.43 -66.09 -0.23 3.05 16 12 H 0.08 1.47 7.94 -51.93 -0.41 1.05 16 13 C -0.15 -2.40 6.65 -24.58 -0.16 -2.57 16 14 C 0.09 1.17 5.08 -2.52 -0.01 1.16 16 15 N -0.60 -9.36 3.33 -171.48 -0.57 -9.93 16 16 C 0.56 8.96 7.56 -12.45 -0.09 8.86 16 17 O -0.54 -10.43 17.09 5.28 0.09 -10.34 16 18 C -0.11 -1.33 5.59 -104.91 -0.59 -1.91 16 19 C -0.06 -0.65 9.54 -39.59 -0.38 -1.02 16 20 C -0.10 -0.87 9.51 -39.60 -0.38 -1.24 16 21 C 0.00 -0.03 5.88 -104.91 -0.62 -0.65 16 22 C 0.00 -0.01 7.06 -36.59 -0.26 -0.27 16 23 C -0.02 -0.17 11.29 -17.42 -0.20 -0.37 16 24 N -0.49 -4.45 11.27 -14.67 -0.17 -4.61 16 25 C 0.17 1.14 13.21 52.16 0.69 1.83 16 26 O -0.20 -1.66 10.57 4.26 0.05 -1.61 16 27 C -0.10 -0.94 9.67 -39.59 -0.38 -1.33 16 28 C -0.09 -0.91 7.84 -39.59 -0.31 -1.22 16 29 C 0.09 1.54 6.42 -2.90 -0.02 1.53 16 30 H 0.03 0.69 7.45 -51.93 -0.39 0.31 16 31 H 0.05 1.47 7.01 -51.93 -0.36 1.10 16 32 H -0.01 -0.11 6.35 -51.93 -0.33 -0.44 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 1.35 7.24 -51.92 -0.38 0.98 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.82 6.50 -51.93 -0.34 0.48 16 37 H 0.07 0.72 7.19 -51.93 -0.37 0.34 16 38 H 0.14 1.47 7.96 -52.49 -0.42 1.05 16 39 H 0.14 0.80 7.02 -52.49 -0.37 0.43 16 40 H 0.19 1.13 7.29 -52.48 -0.38 0.75 16 41 H 0.25 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 1.00 7.93 -52.49 -0.42 0.58 16 43 H 0.14 1.26 5.13 -52.49 -0.27 0.99 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.53 6.20 -51.93 -0.32 1.21 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -33.16 369.19 -8.29 -41.45 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.57 Total: -0.47 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.72 Total: 3.33 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.68 Total: -54.09 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.14 Total: -11.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.16 -8.29 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971801002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.932 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds