Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00315 * 2 1 4 4 H 1.07994 * 120.00562 * 203.44863 * 3 2 1 5 5 C 1.38814 * 119.99933 * 23.44517 * 3 2 1 6 6 N 1.31628 * 119.99696 * 14.52483 * 5 3 2 7 7 Si 1.86804 * 120.00253 * 194.52982 * 5 3 2 8 8 H 1.48501 * 109.47016 * 89.99792 * 7 5 3 9 9 H 1.48501 * 109.46801 * 209.99968 * 7 5 3 10 10 H 1.48495 * 109.46673 * 329.99952 * 7 5 3 11 11 C 1.46507 * 119.99840 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63764 * 178.31164 * 11 2 1 13 13 C 1.55445 * 110.70903 * 55.00023 * 11 2 1 14 14 C 1.54901 * 101.45165 * 206.14623 * 13 11 2 15 15 N 1.47424 * 104.93205 * 37.00299 * 14 13 11 16 16 C 1.34774 * 125.64997 * 155.83561 * 15 14 13 17 17 O 1.21502 * 119.99621 * 179.97438 * 16 15 14 18 18 C 1.48341 * 120.00334 * 359.97438 * 16 15 14 19 19 C 1.41918 * 126.84680 * 179.71349 * 18 16 15 20 20 C 1.36712 * 103.81694 * 179.85576 * 19 18 16 21 21 C 1.47850 * 126.81907 * 180.12454 * 20 19 18 22 22 C 1.39560 * 120.14242 * 0.02562 * 21 20 19 23 23 C 1.37967 * 119.85545 * 179.76745 * 22 21 20 24 24 C 1.38353 * 120.14002 * 0.50804 * 23 22 21 25 25 C 1.38362 * 120.29426 * 359.74291 * 24 23 22 26 26 C 1.37965 * 120.13808 * 359.97438 * 25 24 23 27 27 O 1.34467 * 106.36235 * 0.39381 * 20 19 18 28 28 N 1.20877 * 111.73807 * 359.73341 * 27 20 19 29 29 C 1.47022 * 108.69979 * 335.81958 * 15 14 13 30 30 H 1.08994 * 109.47186 * 275.18641 * 1 2 3 31 31 H 1.09005 * 109.47136 * 35.18790 * 1 2 3 32 32 H 1.09000 * 109.47509 * 155.18829 * 1 2 3 33 33 H 0.96999 * 119.99374 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.11932 * 88.09019 * 13 11 2 35 35 H 1.09008 * 111.01137 * 324.15350 * 13 11 2 36 36 H 1.08999 * 110.36863 * 278.11045 * 14 13 11 37 37 H 1.09001 * 110.37269 * 155.89983 * 14 13 11 38 38 H 1.07997 * 128.08910 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.07436 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.92998 * 180.25517 * 23 22 21 41 41 H 1.08000 * 119.85521 * 179.76958 * 24 23 22 42 42 H 1.07994 * 119.93136 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.06766 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.88638 * 120.47730 * 29 15 14 45 45 H 1.09003 * 109.88433 * 241.63730 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1628 1.2245 -0.3721 5 6 1.5416 2.3384 0.4783 6 7 0.4356 2.2534 1.1869 7 14 2.2929 4.0100 0.1163 8 1 1.7333 4.5396 -1.1532 9 1 1.9763 4.9455 1.2253 10 1 3.7660 3.8734 -0.0110 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.7501 -2.1613 -1.1920 14 6 2.0637 -3.5780 -0.6498 15 7 1.7323 -3.5174 0.7854 16 6 1.4052 -4.5698 1.5612 17 8 1.1504 -4.4016 2.7372 18 6 1.3564 -5.9335 0.9793 19 6 1.0371 -7.1378 1.6589 20 6 1.1296 -8.0952 0.6874 21 6 0.8931 -9.5459 0.8477 22 6 0.5341 -10.0640 2.0928 23 6 0.3102 -11.4180 2.2346 24 6 0.4512 -12.2630 1.1481 25 6 0.8119 -11.7564 -0.0878 26 6 1.0330 -10.4036 -0.2443 27 8 1.4841 -7.4564 -0.4415 28 7 1.6048 -6.2669 -0.2637 29 6 1.8182 -2.1188 1.2304 30 1 -0.3633 0.0929 1.0234 31 1 -0.3634 0.8399 -0.5922 32 1 -0.3634 -0.9328 -0.4312 33 1 0.0106 3.0588 1.5208 34 1 2.3362 -1.9463 -2.0856 35 1 0.6842 -2.0453 -1.3886 36 1 3.1197 -3.8111 -0.7858 37 1 1.4443 -4.3218 -1.1510 38 1 0.7793 -7.2673 2.6996 39 1 0.4285 -9.4062 2.9428 40 1 0.0284 -11.8197 3.1966 41 1 0.2784 -13.3226 1.2652 42 1 0.9207 -12.4213 -0.9318 43 1 1.3150 -10.0095 -1.2095 44 1 0.8541 -1.7944 1.6220 45 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971904049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = 94.342065 kcal Electronic energy + Delta-G solvation = -28423.848688 eV Core-core repulsion = 24411.027322 eV Total energy + Delta-G solvation = -4012.821366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.22212 -39.74141 -39.52504 -37.48296 -34.86632 -34.29573 -33.51573 -31.64274 -31.42633 -29.94755 -29.74026 -28.08133 -26.07490 -25.26598 -24.12314 -23.50442 -22.50671 -22.36252 -21.87528 -19.53140 -19.20165 -18.11550 -18.00196 -17.10229 -16.97660 -16.66386 -15.83386 -15.58661 -15.42682 -15.14530 -14.82027 -14.24679 -14.05721 -13.84343 -13.64663 -13.42558 -13.38875 -13.35094 -12.71306 -12.58280 -12.23030 -12.09190 -11.90896 -11.72567 -11.54305 -11.30864 -10.94670 -10.82464 -10.69673 -10.62681 -10.56605 -10.47968 -10.27230 -10.12505 -9.87585 -9.81596 -9.46475 -8.77649 -8.59390 -8.40210 -6.83283 -5.77830 -3.26301 0.19518 0.90085 1.16062 1.78408 2.53900 2.93068 3.21006 3.35565 3.36505 3.42792 3.44307 3.80046 4.07375 4.41505 4.45194 4.47809 4.59783 4.73167 4.83233 4.87016 4.96106 5.02858 5.15341 5.26600 5.33317 5.38371 5.51745 5.55650 5.59892 5.62364 5.85140 5.90199 5.93493 5.94549 6.00157 6.02607 6.31472 6.35940 6.40596 6.48155 6.60703 6.79458 6.84495 7.29692 7.61667 7.68949 7.76348 7.77633 8.17780 8.33463 9.16213 9.78645 10.28105 11.26251 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.001936 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.466657 B =14460.385956 C =14864.403372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.099 3.901 15 N -0.594 5.594 16 C 0.602 3.398 17 O -0.528 6.528 18 C -0.010 4.010 19 C -0.165 4.165 20 C 0.004 3.996 21 C -0.020 4.020 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.107 4.107 25 C -0.118 4.118 26 C -0.094 4.094 27 O 0.125 5.875 28 N -0.323 5.323 29 C 0.087 3.913 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.003 0.997 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.183 0.817 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 -29.339 -2.766 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.327 5.327 16 C 0.387 3.613 17 O -0.404 6.404 18 C -0.168 4.168 19 C -0.187 4.187 20 C -0.058 4.058 21 C -0.022 4.022 22 C -0.108 4.108 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.112 4.112 27 O 0.049 5.951 28 N -0.024 5.024 29 C -0.037 4.037 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.200 0.800 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.574 -28.295 -3.059 28.466 hybrid contribution 0.084 0.700 0.659 0.965 sum 0.658 -27.595 -2.399 27.707 Atomic orbital electron populations 1.20820 0.82502 0.95691 0.99713 1.43925 1.01864 0.99881 1.84723 1.19223 0.98988 0.85203 1.35851 0.91123 1.25081 0.98043 0.98727 0.97545 1.70083 1.20573 1.27513 1.36394 0.86215 0.78727 0.83888 0.77442 1.21415 1.21723 1.20395 1.21442 0.96532 0.85896 0.89895 0.90130 1.23418 1.02842 0.93040 0.99991 1.22516 1.00555 0.99257 0.80059 1.48421 1.65402 1.07758 1.11156 1.16506 0.78500 0.81110 0.85204 1.90804 1.50257 1.84235 1.15085 1.23440 1.05683 0.97302 0.90384 1.22589 1.05108 0.89064 1.01932 1.22429 1.03483 0.94104 0.85822 1.17593 1.03306 0.86227 0.95041 1.21177 0.97904 0.95883 0.95848 1.21103 1.00138 0.92890 0.99386 1.21366 0.98150 1.00164 0.92881 1.21134 0.99669 0.94980 0.97856 1.21329 0.98181 0.93406 0.98292 1.84873 1.62925 1.14161 1.33187 1.74267 1.16531 0.93127 1.18448 1.23071 1.02769 0.77714 1.00163 0.94832 0.93928 0.97811 0.93575 0.90167 0.90427 0.91458 0.90032 0.79995 0.85039 0.85140 0.85554 0.85265 0.84881 0.90443 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.75 59.85 0.46 4.30 16 2 N -0.58 -14.31 2.93 -171.21 -0.50 -14.81 16 3 C -0.26 -7.08 9.59 -15.06 -0.14 -7.22 16 4 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 5 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 6 N -0.90 -26.17 10.82 55.49 0.60 -25.57 16 7 Si 0.91 21.63 29.58 -169.99 -5.03 16.60 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.47 3.45 -65.94 -0.23 3.25 16 12 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 13 C -0.15 -2.54 6.61 -24.43 -0.16 -2.70 16 14 C 0.10 1.51 6.17 -2.53 -0.02 1.49 16 15 N -0.59 -10.59 3.33 -171.45 -0.57 -11.16 16 16 C 0.60 10.84 7.88 -12.10 -0.10 10.75 16 17 O -0.53 -10.94 17.27 5.36 0.09 -10.85 16 18 C -0.01 -0.15 7.00 -82.62 -0.58 -0.72 16 19 C -0.16 -1.96 10.34 -38.73 -0.40 -2.37 16 20 C 0.00 0.05 7.15 -36.20 -0.26 -0.21 16 21 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 22 C -0.09 -0.63 9.58 -39.19 -0.38 -1.00 16 23 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 24 C -0.11 -0.55 10.04 -39.49 -0.40 -0.95 16 25 C -0.12 -0.66 10.03 -39.64 -0.40 -1.05 16 26 C -0.09 -0.65 9.73 -39.19 -0.38 -1.04 16 27 O 0.12 1.45 11.01 16.04 0.18 1.63 16 28 N -0.32 -4.44 9.27 33.35 0.31 -4.13 16 29 C 0.09 1.74 6.51 -3.07 -0.02 1.72 16 30 H 0.03 0.90 7.25 -51.93 -0.38 0.52 16 31 H 0.04 1.11 7.42 -51.93 -0.39 0.72 16 32 H 0.00 0.08 6.13 -51.93 -0.32 -0.24 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.37 6.15 -51.92 -0.32 1.05 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.19 6.22 -51.93 -0.32 0.87 16 38 H 0.18 1.82 7.46 -52.49 -0.39 1.43 16 39 H 0.13 0.76 7.15 -52.49 -0.38 0.39 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.13 0.79 7.96 -52.49 -0.42 0.37 16 44 H 0.08 1.75 7.06 -51.93 -0.37 1.38 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.05 373.83 -9.15 -41.20 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.77 Total: -1.01 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -4.09 Total: 2.46 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.16 Total: -55.66 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.27 Total: -9.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.05 -9.15 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971904049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.539 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds