Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 120.00354 * 2 1 4 4 H 1.08002 * 120.00430 * 161.37167 * 3 2 1 5 5 C 1.38816 * 119.99738 * 341.10679 * 3 2 1 6 6 N 1.31615 * 120.00061 * 345.82450 * 5 3 2 7 7 Si 1.86800 * 119.99844 * 165.82329 * 5 3 2 8 8 H 1.48498 * 109.47275 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46888 * 119.99887 * 7 5 3 10 10 H 1.48500 * 109.47363 * 239.99809 * 7 5 3 11 11 C 1.46497 * 120.00119 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.64791 * 181.68537 * 11 2 1 13 13 C 1.55161 * 110.71834 * 305.01728 * 11 2 1 14 14 C 1.54907 * 101.58412 * 153.86511 * 13 11 2 15 15 N 1.47427 * 104.82996 * 322.99247 * 14 13 11 16 16 C 1.34780 * 125.64301 * 204.09204 * 15 14 13 17 17 O 1.21642 * 119.99770 * 174.65150 * 16 15 14 18 18 C 1.47145 * 120.00124 * 354.64829 * 16 15 14 19 19 C 1.39027 * 121.10172 * 322.30097 * 18 16 15 20 20 N 1.32080 * 121.40678 * 179.97438 * 19 18 16 21 21 C 1.31824 * 123.60099 * 0.02562 * 20 19 18 22 22 O 1.35252 * 119.61125 * 180.02562 * 21 20 19 23 23 C 1.41179 * 120.77851 * 0.02562 * 21 20 19 24 24 C 1.40122 * 122.11267 * 179.97438 * 23 21 20 25 25 C 1.36366 * 119.50369 * 179.07122 * 24 23 21 26 26 C 1.39186 * 121.05402 * 0.90268 * 25 24 23 27 27 C 1.36512 * 120.88905 * 359.37386 * 26 25 24 28 28 C 1.39613 * 119.44158 * 0.02562 * 27 26 25 29 29 C 1.47015 * 108.70308 * 24.12730 * 15 14 13 30 30 H 1.08998 * 109.47219 * 84.90295 * 1 2 3 31 31 H 1.08994 * 109.46815 * 204.90846 * 1 2 3 32 32 H 1.09004 * 109.46408 * 324.90230 * 1 2 3 33 33 H 0.96998 * 120.00165 * 180.02562 * 6 5 3 34 34 H 1.09000 * 111.00427 * 271.94313 * 13 11 2 35 35 H 1.09002 * 111.00470 * 35.78827 * 13 11 2 36 36 H 1.08996 * 110.36830 * 204.15098 * 14 13 11 37 37 H 1.08999 * 110.45915 * 81.87618 * 14 13 11 38 38 H 1.07997 * 119.30038 * 0.02562 * 19 18 16 39 39 H 0.96702 * 113.99885 * 90.00149 * 22 21 20 40 40 H 1.07999 * 120.24533 * 359.97438 * 24 23 21 41 41 H 1.07997 * 119.47384 * 180.31933 * 25 24 23 42 42 H 1.07999 * 119.55219 * 179.38799 * 26 25 24 43 43 H 1.08005 * 120.27708 * 179.97438 * 27 26 25 44 44 H 1.09005 * 109.88175 * 239.51831 * 29 15 14 45 45 H 1.09007 * 109.88045 * 118.36309 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1873 1.2104 0.2988 5 6 1.5118 2.3557 -0.3893 6 7 0.3563 2.2976 -1.0168 7 14 2.2932 4.0122 -0.0224 8 1 3.5817 3.8057 0.6864 9 1 2.5397 4.7361 -1.2955 10 1 1.3799 4.8119 0.8329 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7508 -2.1610 1.1876 14 6 2.0638 -3.5785 0.6469 15 7 1.7323 -3.5167 -0.7882 16 6 1.4054 -4.5686 -1.5649 17 8 1.0554 -4.3893 -2.7159 18 6 1.4721 -5.9340 -1.0203 19 6 2.4852 -6.3096 -0.1455 20 7 2.5506 -7.5333 0.3472 21 6 1.6826 -8.4829 0.0596 22 8 1.8265 -9.7093 0.6113 23 6 0.6046 -8.2347 -0.8176 24 6 -0.3337 -9.2233 -1.1430 25 6 -1.3653 -8.9200 -1.9816 26 6 -1.4912 -7.6489 -2.5346 27 6 -0.5909 -6.6652 -2.2423 28 6 0.4698 -6.9406 -1.3773 29 6 1.8181 -2.1178 -1.2321 30 1 -0.3633 0.0913 -1.0236 31 1 -0.3633 -0.9320 0.4328 32 1 -0.3632 0.8409 0.5909 33 1 -0.0893 3.1150 -1.2892 34 1 2.3374 -1.9450 2.0805 35 1 0.6851 -2.0445 1.3846 36 1 1.4431 -4.3213 1.1480 37 1 3.1195 -3.8135 0.7827 38 1 3.2344 -5.5852 0.1379 39 1 1.3687 -9.8167 1.4563 40 1 -0.2487 -10.2139 -0.7213 41 1 -2.0911 -9.6808 -2.2280 42 1 -2.3123 -7.4380 -3.2036 43 1 -0.6978 -5.6824 -2.6773 44 1 0.8539 -1.7932 -1.6234 45 1 2.5847 -2.0191 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972481880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 0.326934 kcal Electronic energy + Delta-G solvation = -29334.019036 eV Core-core repulsion = 25317.120869 eV Total energy + Delta-G solvation = -4016.898168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20800 -40.92303 -39.15957 -38.76540 -37.78032 -36.59281 -33.67338 -33.08650 -32.27878 -31.47627 -30.71340 -29.16913 -28.09218 -26.24455 -24.95386 -24.80018 -23.93728 -23.35566 -21.04042 -20.75743 -20.08514 -18.97738 -18.92233 -18.73276 -17.84493 -17.53469 -16.90362 -16.73773 -16.53969 -16.01486 -15.69470 -15.46629 -15.13972 -15.07722 -14.84577 -14.60127 -14.41522 -14.13617 -13.93656 -13.78192 -13.35706 -13.25490 -13.06155 -12.98740 -12.91200 -12.78653 -12.51217 -12.40762 -12.38592 -12.22794 -12.07073 -11.79237 -11.48567 -11.28073 -11.01248 -10.64406 -10.54096 -10.22209 -9.76717 -9.12828 -8.87868 -7.84010 -5.30498 -1.06304 -0.24479 0.55666 1.47644 1.48220 1.49135 1.59572 1.75338 2.01527 2.39607 2.51333 2.86207 3.22625 3.30349 3.37051 3.52226 3.54187 3.74394 3.78773 3.80976 4.03667 4.09297 4.22480 4.25503 4.28084 4.35027 4.43881 4.50932 4.57358 4.60971 4.75377 4.85066 4.91847 4.98883 5.00886 5.14812 5.18828 5.26323 5.29307 5.36330 5.40590 5.42749 5.63126 5.70463 5.78489 6.28653 6.40054 6.49895 6.72172 6.94942 7.11843 7.83019 8.26444 9.19843 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002530 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.601390 B =11065.765404 C =11845.416736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.261 4.261 4 H 0.083 0.917 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.972 3.028 8 H -0.261 1.261 9 H -0.298 1.298 10 H -0.293 1.293 11 C 0.167 3.833 12 H 0.090 0.910 13 C -0.139 4.139 14 C 0.101 3.899 15 N -0.604 5.604 16 C 0.576 3.424 17 O -0.579 6.579 18 C -0.200 4.200 19 C 0.156 3.844 20 N -0.534 5.534 21 C 0.395 3.605 22 O -0.473 6.473 23 C -0.142 4.142 24 C -0.068 4.068 25 C -0.119 4.119 26 C -0.077 4.077 27 C -0.143 4.143 28 C 0.006 3.994 29 C 0.099 3.901 30 H -0.007 1.007 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.183 0.817 39 H 0.432 0.568 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -27.375 6.378 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.391 4.391 4 H 0.101 0.899 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.800 3.200 8 H -0.185 1.185 9 H -0.225 1.225 10 H -0.220 1.220 11 C 0.058 3.942 12 H 0.108 0.892 13 C -0.178 4.178 14 C -0.021 4.021 15 N -0.336 5.336 16 C 0.366 3.634 17 O -0.461 6.461 18 C -0.206 4.206 19 C 0.012 3.988 20 N -0.253 5.253 21 C 0.203 3.797 22 O -0.285 6.285 23 C -0.145 4.145 24 C -0.087 4.087 25 C -0.136 4.136 26 C -0.096 4.096 27 C -0.161 4.161 28 C 0.001 3.999 29 C -0.027 4.027 30 H 0.012 0.988 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.199 0.801 39 H 0.296 0.704 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.169 0.831 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.482 -27.417 5.800 28.028 hybrid contribution -0.819 1.990 -0.772 2.287 sum -1.301 -25.427 5.028 25.952 Atomic orbital electron populations 1.20452 0.82904 0.95857 0.97095 1.44166 1.01963 1.01144 1.84993 1.19715 0.96674 0.85440 1.37276 0.89890 1.25795 0.98377 1.01896 0.99152 1.70295 1.18902 1.26892 1.42796 0.85129 0.78188 0.79783 0.76873 1.18480 1.22505 1.21957 1.21579 0.96571 0.84532 0.91517 0.89194 1.23234 1.02462 0.92941 0.99203 1.22722 1.02350 0.98520 0.78465 1.48476 1.66775 1.06413 1.11940 1.17817 0.76829 0.84096 0.84686 1.90756 1.49474 1.86293 1.19567 1.21652 1.01148 0.93576 1.04217 1.22805 0.95178 0.91776 0.89083 1.66727 1.28846 1.01537 1.28231 1.19517 0.86364 0.84630 0.89223 1.84575 1.77425 1.23655 1.42844 1.19035 0.98581 0.94254 1.02664 1.21346 0.91929 0.99015 0.96435 1.21407 0.98856 0.96813 0.96537 1.21499 0.97755 0.92941 0.97417 1.21148 0.95009 1.01265 0.98692 1.18924 0.93930 0.91753 0.95298 1.22581 1.00070 0.80344 0.99690 0.98838 0.95338 0.95838 0.94393 0.87588 0.91655 0.89201 0.87896 0.80076 0.70356 0.81041 0.81394 0.83136 0.86507 0.94472 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.07 7.73 127.77 0.99 10.06 16 2 N -0.60 -29.14 2.94 -696.16 -2.05 -31.19 16 3 C -0.26 -13.85 9.66 84.03 0.81 -13.04 16 4 H 0.08 4.15 7.81 -2.91 -0.02 4.13 16 5 C -0.06 -3.19 5.09 84.86 0.43 -2.76 16 6 N -0.94 -56.17 10.54 21.65 0.23 -55.95 16 7 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 8 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 C 0.17 6.27 3.45 46.18 0.16 6.43 16 12 H 0.09 3.21 7.90 -2.39 -0.02 3.19 16 13 C -0.14 -3.93 6.59 31.99 0.21 -3.72 16 14 C 0.10 2.36 5.25 86.85 0.46 2.82 16 15 N -0.60 -19.46 3.33 -815.98 -2.71 -22.18 16 16 C 0.58 19.94 7.25 86.58 0.63 20.56 16 17 O -0.58 -24.73 15.27 -4.16 -0.06 -24.79 16 18 C -0.20 -5.63 5.54 -18.60 -0.10 -5.73 16 19 C 0.16 3.59 9.40 84.84 0.80 4.39 16 20 N -0.53 -11.81 10.25 -307.30 -3.15 -14.96 16 21 C 0.40 7.41 7.79 85.42 0.67 8.07 16 22 O -0.47 -5.61 12.80 -85.36 -1.09 -6.70 16 23 C -0.14 -2.81 5.75 -21.26 -0.12 -2.93 16 24 C -0.07 -0.88 9.58 22.29 0.21 -0.67 16 25 C -0.12 -1.45 9.95 22.06 0.22 -1.23 16 26 C -0.08 -1.37 9.96 22.09 0.22 -1.15 16 27 C -0.14 -3.75 9.27 22.20 0.21 -3.54 16 28 C 0.01 0.15 5.90 -19.96 -0.12 0.04 16 29 C 0.10 3.86 6.51 86.73 0.56 4.42 16 30 H -0.01 -0.38 7.37 -2.39 -0.02 -0.40 16 31 H 0.03 1.23 6.12 -2.39 -0.01 1.21 16 32 H 0.02 1.25 7.09 -2.39 -0.02 1.23 16 33 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 2.05 6.14 -2.39 -0.01 2.03 16 36 H 0.09 1.82 7.33 -2.39 -0.02 1.80 16 37 H 0.10 1.79 6.98 -2.39 -0.02 1.77 16 38 H 0.18 3.42 5.91 -2.91 -0.02 3.40 16 39 H 0.43 0.33 9.06 -74.06 -0.67 -0.34 16 40 H 0.17 1.03 7.66 -2.91 -0.02 1.01 16 41 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.12 3.76 6.15 -2.91 -0.02 3.74 16 44 H 0.04 1.73 7.06 -2.38 -0.02 1.72 16 45 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -77.92 363.96 -0.20 -78.12 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.38 Total: 8.98 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.23 Total: 22.02 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.68 Total: -124.27 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.16 Total: -31.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.92 -0.20 -78.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972481880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.448 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds