Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99854 * 2 1 4 4 H 1.07993 * 120.00153 * 204.27262 * 3 2 1 5 5 C 1.38817 * 119.99815 * 24.27741 * 3 2 1 6 6 N 1.31621 * 119.99893 * 8.60248 * 5 3 2 7 7 Si 1.86792 * 119.99897 * 188.60788 * 5 3 2 8 8 H 1.48504 * 109.47241 * 89.99710 * 7 5 3 9 9 H 1.48499 * 109.47260 * 209.99841 * 7 5 3 10 10 H 1.48499 * 109.47195 * 330.00088 * 7 5 3 11 11 C 1.46496 * 120.00070 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63974 * 176.85518 * 11 2 1 13 13 C 1.55160 * 110.71946 * 299.99740 * 11 2 1 14 14 C 1.54913 * 101.57922 * 153.86458 * 13 11 2 15 15 N 1.47421 * 104.83557 * 322.99161 * 14 13 11 16 16 C 1.34776 * 125.64928 * 204.08912 * 15 14 13 17 17 O 1.21553 * 119.99612 * 183.02691 * 16 15 14 18 18 C 1.47867 * 119.99882 * 3.03277 * 16 15 14 19 19 C 1.39683 * 120.07450 * 333.32105 * 18 16 15 20 20 C 1.38050 * 120.14426 * 179.97438 * 19 18 16 21 21 C 1.38095 * 120.30210 * 0.26008 * 20 19 18 22 22 C 1.39641 * 120.14536 * 359.48672 * 21 20 19 23 23 C 1.47851 * 120.07461 * 180.25694 * 22 21 20 24 24 C 1.35765 * 126.58036 * 359.96465 * 23 22 21 25 25 N 1.34143 * 107.51496 * 179.87078 * 24 23 22 26 26 C 1.30361 * 108.90062 * 0.39987 * 25 24 23 27 27 O 1.33997 * 109.03526 * 359.74669 * 26 25 24 28 28 C 1.39309 * 120.07185 * 153.30530 * 18 16 15 29 29 C 1.47026 * 108.70135 * 24.35856 * 15 14 13 30 30 H 1.08996 * 109.46942 * 275.12426 * 1 2 3 31 31 H 1.08994 * 109.47255 * 35.12862 * 1 2 3 32 32 H 1.09001 * 109.47039 * 155.12616 * 1 2 3 33 33 H 0.97005 * 119.99616 * 179.97438 * 6 5 3 34 34 H 1.08994 * 111.00383 * 35.79743 * 13 11 2 35 35 H 1.08992 * 111.03655 * 271.95662 * 13 11 2 36 36 H 1.08997 * 110.36439 * 204.14762 * 14 13 11 37 37 H 1.09004 * 110.45832 * 81.87923 * 14 13 11 38 38 H 1.07998 * 119.92781 * 0.02562 * 19 18 16 39 39 H 1.08006 * 119.84495 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.92314 * 179.72513 * 21 20 19 41 41 H 1.08001 * 126.24554 * 0.02562 * 24 23 22 42 42 H 1.08000 * 125.48304 * 179.75358 * 26 25 24 43 43 H 1.07996 * 120.15293 * 359.97438 * 28 18 16 44 44 H 1.08996 * 109.88744 * 118.13187 * 29 15 14 45 45 H 1.09006 * 109.87894 * 239.29577 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1580 1.2273 -0.3845 5 6 1.5476 2.3349 0.4943 6 7 0.3900 2.2561 1.1157 7 14 2.3802 3.9929 0.2773 8 1 1.9346 4.6074 -0.9990 9 1 2.0148 4.8822 1.4090 10 1 3.8533 3.8072 0.2494 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0921 -0.0564 13 6 1.8437 -2.1074 1.2559 14 6 2.1172 -3.5478 0.7555 15 7 1.6778 -3.5483 -0.6517 16 6 1.2949 -4.6326 -1.3547 17 8 1.0034 -4.5232 -2.5297 18 6 1.2294 -5.9551 -0.6965 19 6 2.0418 -6.2292 0.4062 20 6 1.9814 -7.4632 1.0221 21 6 1.1226 -8.4362 0.5501 22 6 0.3011 -8.1737 -0.5482 23 6 -0.6219 -9.2146 -1.0487 24 6 -0.7794 -10.4659 -0.5459 25 7 -1.7126 -11.0836 -1.2855 26 6 -2.1209 -10.2683 -2.2172 27 8 -1.4662 -9.1053 -2.0978 28 6 0.3570 -6.9303 -1.1747 29 6 1.7327 -2.1709 -1.1632 30 1 -0.3633 0.0918 1.0235 31 1 -0.3633 0.8404 -0.5913 32 1 -0.3633 -0.9323 -0.4323 33 1 -0.0305 3.0590 1.4615 34 1 0.7958 -1.9808 1.5277 35 1 2.4954 -1.8538 2.0919 36 1 1.5376 -4.2669 1.3342 37 1 3.1806 -3.7783 0.8210 38 1 2.7180 -5.4738 0.7783 39 1 2.6120 -7.6701 1.8742 40 1 1.0835 -9.4010 1.0339 41 1 -0.2517 -10.8863 0.2974 42 1 -2.8669 -10.4940 -2.9648 43 1 -0.2737 -6.7233 -2.0265 44 1 2.4418 -2.1099 -1.9888 45 1 0.7430 -1.8603 -1.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972647621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 63.628315 kcal Electronic energy + Delta-G solvation = -28622.771881 eV Core-core repulsion = 24608.618667 eV Total energy + Delta-G solvation = -4014.153214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.63494 -40.49657 -38.77883 -37.39180 -35.13848 -34.94625 -33.14377 -31.77182 -31.30861 -29.85882 -29.23419 -27.77134 -26.10104 -24.97188 -24.01270 -23.35396 -22.49749 -22.12751 -21.51750 -19.85071 -19.25163 -18.27936 -17.13382 -17.10782 -16.92749 -16.61229 -16.12766 -15.82469 -15.32004 -14.83893 -14.71822 -14.45858 -14.17205 -14.00173 -13.62656 -13.47966 -13.35605 -13.18182 -12.65564 -12.63260 -12.41229 -12.11052 -11.85683 -11.76994 -11.68221 -11.22930 -11.00254 -10.95149 -10.81136 -10.62607 -10.48066 -10.36994 -10.22021 -9.93522 -9.92422 -9.82201 -9.34771 -8.62552 -8.48664 -8.42731 -6.85079 -5.79674 -3.29392 0.20536 0.72556 1.53028 2.29084 2.32937 2.80370 3.03733 3.34319 3.40834 3.41685 3.56984 3.83885 4.19195 4.34895 4.42127 4.50802 4.60382 4.66844 4.77259 4.97215 5.00479 5.10290 5.21083 5.26650 5.35102 5.41821 5.48181 5.51259 5.58607 5.69267 5.83157 5.88619 5.93097 5.96114 5.98512 6.01138 6.22706 6.31757 6.38801 6.50557 6.58111 6.77587 6.81899 7.28687 7.33823 7.62720 7.69602 7.74854 8.21075 8.32316 9.15302 9.76529 10.25563 11.24672 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.002092 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.224286 B =13378.726925 C =13779.927538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.587 5.587 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.090 3.910 15 N -0.603 5.603 16 C 0.566 3.434 17 O -0.540 6.540 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.076 4.076 22 C -0.029 4.029 23 C 0.005 3.995 24 C -0.026 4.026 25 N -0.487 5.487 26 C 0.174 3.826 27 O -0.196 6.196 28 C -0.043 4.043 29 C 0.086 3.914 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.000 1.000 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.187 0.813 42 H 0.252 0.748 43 H 0.139 0.861 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -24.048 0.702 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.033 4.033 15 N -0.335 5.335 16 C 0.354 3.646 17 O -0.418 6.418 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.030 4.030 23 C -0.048 4.048 24 C -0.165 4.165 25 N -0.215 5.215 26 C -0.051 4.051 27 O -0.082 6.082 28 C -0.062 4.062 29 C -0.038 4.038 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.157 0.843 44 H 0.082 0.918 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.233 -24.405 0.137 24.407 hybrid contribution 0.444 1.506 -0.151 1.577 sum 0.677 -22.900 -0.014 22.910 Atomic orbital electron populations 1.20835 0.82385 0.95597 0.99642 1.43856 1.01907 0.99838 1.85120 1.19223 0.99104 0.85617 1.35037 0.91211 1.25092 0.97524 0.98751 0.98002 1.70060 1.17379 1.27563 1.40054 0.86198 0.78924 0.83772 0.77264 1.21417 1.21682 1.20420 1.21306 0.96348 0.85990 0.90095 0.90239 1.23439 1.03131 0.92246 1.00461 1.22765 0.98859 0.99879 0.81833 1.48374 1.64270 1.07782 1.13119 1.17864 0.77767 0.83048 0.85879 1.90787 1.49984 1.85574 1.15482 1.19878 0.99728 0.94695 0.97681 1.22130 0.97606 0.97663 0.93274 1.21038 0.99313 0.92817 1.00695 1.21191 0.94170 0.99849 0.94193 1.17481 0.96641 0.91385 0.97465 1.21413 0.96070 0.96818 0.90541 1.23291 0.99473 0.91113 1.02650 1.70362 1.12194 1.32832 1.06127 1.28181 0.98461 0.78570 0.99913 1.84522 1.42879 1.38524 1.42250 1.21321 0.96214 0.90682 0.97977 1.22819 1.02718 0.79372 0.98916 0.94851 0.93717 0.98130 0.93632 0.90481 0.90161 0.90533 0.91125 0.83463 0.84391 0.84898 0.79616 0.73214 0.84312 0.91787 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.73 59.85 0.46 4.29 16 2 N -0.59 -13.97 2.94 -171.38 -0.50 -14.47 16 3 C -0.26 -6.84 9.61 -15.06 -0.14 -6.99 16 4 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 5 C 0.00 0.14 5.19 -17.43 -0.09 0.04 16 6 N -0.91 -25.60 10.55 55.49 0.59 -25.02 16 7 Si 0.91 21.27 29.56 -169.99 -5.03 16.25 16 8 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.17 3.27 3.43 -66.09 -0.23 3.05 16 12 H 0.08 1.47 7.93 -51.93 -0.41 1.05 16 13 C -0.15 -2.40 6.66 -24.58 -0.16 -2.57 16 14 C 0.09 1.11 5.01 -2.53 -0.01 1.10 16 15 N -0.60 -9.40 3.33 -171.61 -0.57 -9.97 16 16 C 0.57 9.20 7.65 -12.32 -0.09 9.11 16 17 O -0.54 -10.71 16.97 5.32 0.09 -10.62 16 18 C -0.12 -1.49 5.70 -105.02 -0.60 -2.09 16 19 C -0.09 -0.85 7.94 -39.11 -0.31 -1.16 16 20 C -0.12 -0.89 10.02 -39.70 -0.40 -1.29 16 21 C -0.08 -0.58 9.57 -39.11 -0.37 -0.95 16 22 C -0.03 -0.30 5.87 -105.03 -0.62 -0.91 16 23 C 0.00 0.05 7.07 -36.53 -0.26 -0.21 16 24 C -0.03 -0.23 11.29 -17.43 -0.20 -0.43 16 25 N -0.49 -4.84 11.27 -14.68 -0.17 -5.01 16 26 C 0.17 1.38 13.22 52.14 0.69 2.07 16 27 O -0.20 -2.03 10.58 4.24 0.04 -1.99 16 28 C -0.04 -0.53 9.27 -38.77 -0.36 -0.89 16 29 C 0.09 1.54 6.41 -3.06 -0.02 1.52 16 30 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 31 H 0.04 1.17 7.31 -51.93 -0.38 0.79 16 32 H 0.00 0.01 6.18 -51.93 -0.32 -0.31 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.36 7.34 -51.93 -0.38 0.98 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 0.82 6.19 -51.93 -0.32 0.49 16 37 H 0.07 0.71 7.25 -51.93 -0.38 0.34 16 38 H 0.15 1.22 4.51 -52.49 -0.24 0.98 16 39 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.13 0.63 7.02 -52.49 -0.37 0.26 16 41 H 0.19 1.13 7.29 -52.49 -0.38 0.75 16 42 H 0.25 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.14 1.85 7.75 -52.49 -0.41 1.45 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.53 6.02 -51.93 -0.31 1.22 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -33.68 368.81 -8.21 -41.90 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.52 Total: -0.32 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.71 Total: 3.70 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.65 Total: -54.47 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.14 Total: -12.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.68 -8.21 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972647621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.525 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds