Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99854 * 2 1 4 4 H 1.07993 * 120.00153 * 204.27262 * 3 2 1 5 5 C 1.38817 * 119.99815 * 24.27741 * 3 2 1 6 6 N 1.31621 * 119.99893 * 8.60248 * 5 3 2 7 7 Si 1.86792 * 119.99897 * 188.60788 * 5 3 2 8 8 H 1.48504 * 109.47241 * 89.99710 * 7 5 3 9 9 H 1.48499 * 109.47260 * 209.99841 * 7 5 3 10 10 H 1.48499 * 109.47195 * 330.00088 * 7 5 3 11 11 C 1.46496 * 120.00070 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63974 * 176.85518 * 11 2 1 13 13 C 1.55160 * 110.71946 * 299.99740 * 11 2 1 14 14 C 1.54913 * 101.57922 * 153.86458 * 13 11 2 15 15 N 1.47421 * 104.83557 * 322.99161 * 14 13 11 16 16 C 1.34776 * 125.64928 * 204.08912 * 15 14 13 17 17 O 1.21553 * 119.99612 * 183.02691 * 16 15 14 18 18 C 1.47867 * 119.99882 * 3.03277 * 16 15 14 19 19 C 1.39683 * 120.07450 * 333.32105 * 18 16 15 20 20 C 1.38050 * 120.14426 * 179.97438 * 19 18 16 21 21 C 1.38095 * 120.30210 * 0.26008 * 20 19 18 22 22 C 1.39641 * 120.14536 * 359.48672 * 21 20 19 23 23 C 1.47851 * 120.07461 * 180.25694 * 22 21 20 24 24 C 1.35765 * 126.58036 * 359.96465 * 23 22 21 25 25 N 1.34143 * 107.51496 * 179.87078 * 24 23 22 26 26 C 1.30361 * 108.90062 * 0.39987 * 25 24 23 27 27 O 1.33997 * 109.03526 * 359.74669 * 26 25 24 28 28 C 1.39309 * 120.07185 * 153.30530 * 18 16 15 29 29 C 1.47026 * 108.70135 * 24.35856 * 15 14 13 30 30 H 1.08996 * 109.46942 * 275.12426 * 1 2 3 31 31 H 1.08994 * 109.47255 * 35.12862 * 1 2 3 32 32 H 1.09001 * 109.47039 * 155.12616 * 1 2 3 33 33 H 0.97005 * 119.99616 * 179.97438 * 6 5 3 34 34 H 1.08994 * 111.00383 * 35.79743 * 13 11 2 35 35 H 1.08992 * 111.03655 * 271.95662 * 13 11 2 36 36 H 1.08997 * 110.36439 * 204.14762 * 14 13 11 37 37 H 1.09004 * 110.45832 * 81.87923 * 14 13 11 38 38 H 1.07998 * 119.92781 * 0.02562 * 19 18 16 39 39 H 1.08006 * 119.84495 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.92314 * 179.72513 * 21 20 19 41 41 H 1.08001 * 126.24554 * 0.02562 * 24 23 22 42 42 H 1.08000 * 125.48304 * 179.75358 * 26 25 24 43 43 H 1.07996 * 120.15293 * 359.97438 * 28 18 16 44 44 H 1.08996 * 109.88744 * 118.13187 * 29 15 14 45 45 H 1.09006 * 109.87894 * 239.29577 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1580 1.2273 -0.3845 5 6 1.5476 2.3349 0.4943 6 7 0.3900 2.2561 1.1157 7 14 2.3802 3.9929 0.2773 8 1 1.9346 4.6074 -0.9990 9 1 2.0148 4.8822 1.4090 10 1 3.8533 3.8072 0.2494 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0921 -0.0564 13 6 1.8437 -2.1074 1.2559 14 6 2.1172 -3.5478 0.7555 15 7 1.6778 -3.5483 -0.6517 16 6 1.2949 -4.6326 -1.3547 17 8 1.0034 -4.5232 -2.5297 18 6 1.2294 -5.9551 -0.6965 19 6 2.0418 -6.2292 0.4062 20 6 1.9814 -7.4632 1.0221 21 6 1.1226 -8.4362 0.5501 22 6 0.3011 -8.1737 -0.5482 23 6 -0.6219 -9.2146 -1.0487 24 6 -0.7794 -10.4659 -0.5459 25 7 -1.7126 -11.0836 -1.2855 26 6 -2.1209 -10.2683 -2.2172 27 8 -1.4662 -9.1053 -2.0978 28 6 0.3570 -6.9303 -1.1747 29 6 1.7327 -2.1709 -1.1632 30 1 -0.3633 0.0918 1.0235 31 1 -0.3633 0.8404 -0.5913 32 1 -0.3633 -0.9323 -0.4323 33 1 -0.0305 3.0590 1.4615 34 1 0.7958 -1.9808 1.5277 35 1 2.4954 -1.8538 2.0919 36 1 1.5376 -4.2669 1.3342 37 1 3.1806 -3.7783 0.8210 38 1 2.7180 -5.4738 0.7783 39 1 2.6120 -7.6701 1.8742 40 1 1.0835 -9.4010 1.0339 41 1 -0.2517 -10.8863 0.2974 42 1 -2.8669 -10.4940 -2.9648 43 1 -0.2737 -6.7233 -2.0265 44 1 2.4418 -2.1099 -1.9888 45 1 0.7430 -1.8603 -1.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972647621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 40.429056 kcal Electronic energy + Delta-G solvation = -28623.777876 eV Core-core repulsion = 24608.618667 eV Total energy + Delta-G solvation = -4015.159209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.30656 -41.60726 -39.77285 -38.77602 -36.64819 -35.83049 -34.09720 -33.23490 -32.27486 -31.29617 -30.13839 -29.01149 -28.09961 -26.12792 -24.92206 -24.39237 -23.84767 -22.95837 -22.28689 -21.02384 -20.69620 -19.09635 -18.96863 -18.09132 -17.64478 -17.60300 -17.34496 -16.93478 -16.53619 -16.18796 -15.68141 -15.62055 -15.17019 -15.00767 -14.90858 -14.72995 -14.52682 -14.26817 -14.11259 -13.81752 -13.79001 -13.24108 -13.16631 -12.84526 -12.77743 -12.55015 -12.47438 -12.44137 -12.25820 -12.14414 -12.05807 -11.78935 -11.68500 -11.52588 -11.13518 -10.94399 -10.65502 -10.14538 -9.70834 -9.17156 -8.81254 -7.83851 -5.35096 -0.48207 -0.09507 0.85784 1.47760 1.49534 1.57646 1.59902 1.69018 1.76363 1.88120 2.50466 2.75215 3.25592 3.32349 3.35383 3.52834 3.57951 3.77956 3.83512 3.94319 4.00423 4.07652 4.14512 4.24802 4.29033 4.29656 4.44099 4.51948 4.60086 4.70673 4.73557 4.83526 4.88055 4.90770 4.95836 5.10216 5.22323 5.27049 5.28712 5.30478 5.32343 5.34320 5.38408 5.63926 5.68738 5.75678 6.31056 6.42093 6.63614 6.96514 7.12711 7.81984 8.27648 9.19534 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026279 B = 0.002092 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.224286 B =13378.726925 C =13779.927538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.603 5.603 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.291 1.291 9 H -0.295 1.295 10 H -0.264 1.264 11 C 0.167 3.833 12 H 0.089 0.911 13 C -0.143 4.143 14 C 0.097 3.903 15 N -0.604 5.604 16 C 0.561 3.439 17 O -0.591 6.591 18 C -0.138 4.138 19 C -0.086 4.086 20 C -0.105 4.105 21 C -0.063 4.063 22 C -0.033 4.033 23 C -0.025 4.025 24 C -0.017 4.017 25 N -0.517 5.517 26 C 0.183 3.817 27 O -0.219 6.219 28 C -0.067 4.067 29 C 0.096 3.904 30 H 0.012 0.988 31 H 0.013 0.987 32 H 0.017 0.983 33 H 0.248 0.752 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.216 0.784 42 H 0.291 0.709 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -26.943 2.849 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.394 4.394 4 H 0.094 0.906 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.800 3.200 8 H -0.218 1.218 9 H -0.222 1.222 10 H -0.189 1.189 11 C 0.058 3.942 12 H 0.107 0.893 13 C -0.183 4.183 14 C -0.024 4.024 15 N -0.335 5.335 16 C 0.352 3.648 17 O -0.473 6.473 18 C -0.141 4.141 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.034 4.034 23 C -0.077 4.077 24 C -0.156 4.156 25 N -0.245 5.245 26 C -0.041 4.041 27 O -0.106 6.106 28 C -0.086 4.086 29 C -0.029 4.029 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.182 0.818 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.233 0.767 42 H 0.306 0.694 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.355 -27.343 2.310 27.542 hybrid contribution -0.245 2.239 -0.880 2.418 sum 2.110 -25.105 1.430 25.234 Atomic orbital electron populations 1.20459 0.83184 0.94988 0.97740 1.44015 1.01770 1.01169 1.85528 1.19579 0.99263 0.86710 1.33888 0.90564 1.25846 0.98307 1.02025 0.98469 1.70223 1.18806 1.27865 1.41521 0.85205 0.78687 0.79666 0.76484 1.21834 1.22154 1.18860 1.21495 0.96243 0.84519 0.91896 0.89318 1.23273 1.02078 0.93814 0.99180 1.22999 1.01581 0.98064 0.79764 1.48412 1.64222 1.06499 1.14385 1.18531 0.76465 0.84334 0.85435 1.90745 1.52195 1.86525 1.17879 1.19624 1.02098 0.92726 0.99649 1.22323 0.96830 0.99292 0.91966 1.21530 0.98632 0.91195 1.00865 1.21689 0.92344 1.01497 0.92526 1.17658 0.97236 0.90348 0.98173 1.21625 0.97128 0.97593 0.91369 1.23772 0.98728 0.90371 1.02736 1.70409 1.13276 1.33610 1.07231 1.29188 0.97779 0.77402 0.99709 1.84530 1.43477 1.39710 1.42845 1.21171 0.96979 0.92231 0.98222 1.22463 1.00759 0.81106 0.98574 0.96974 0.96864 0.96475 0.94277 0.92703 0.88603 0.87831 0.87250 0.81784 0.80033 0.81161 0.76697 0.69370 0.87229 0.92280 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.73 127.77 0.99 10.08 16 2 N -0.60 -29.29 2.94 -696.13 -2.04 -31.33 16 3 C -0.26 -14.01 9.61 84.03 0.81 -13.21 16 4 H 0.08 3.86 7.82 -2.91 -0.02 3.84 16 5 C -0.05 -2.81 5.19 84.86 0.44 -2.37 16 6 N -0.94 -54.57 10.55 21.65 0.23 -54.34 16 7 Si 0.97 44.21 29.56 68.60 2.03 46.24 16 8 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 C 0.17 6.26 3.43 46.19 0.16 6.42 16 12 H 0.09 3.16 7.93 -2.38 -0.02 3.14 16 13 C -0.14 -4.30 6.66 31.99 0.21 -4.08 16 14 C 0.10 2.12 5.01 86.86 0.44 2.56 16 15 N -0.60 -18.54 3.33 -815.13 -2.71 -21.25 16 16 C 0.56 18.67 7.65 86.79 0.66 19.33 16 17 O -0.59 -25.01 16.97 -3.88 -0.07 -25.08 16 18 C -0.14 -3.44 5.70 -20.12 -0.11 -3.56 16 19 C -0.09 -1.34 7.94 22.57 0.18 -1.16 16 20 C -0.10 -0.99 10.02 22.19 0.22 -0.77 16 21 C -0.06 -0.69 9.57 22.57 0.22 -0.48 16 22 C -0.03 -0.64 5.87 -20.13 -0.12 -0.76 16 23 C -0.02 -0.48 7.07 24.24 0.17 -0.31 16 24 C -0.02 -0.27 11.29 83.77 0.95 0.67 16 25 N -0.52 -9.41 11.27 -315.08 -3.55 -12.96 16 26 C 0.18 2.71 13.22 130.46 1.72 4.44 16 27 O -0.22 -4.57 10.58 -7.74 -0.08 -4.65 16 28 C -0.07 -1.70 9.27 22.79 0.21 -1.49 16 29 C 0.10 3.53 6.41 86.73 0.56 4.09 16 30 H 0.01 0.65 7.33 -2.39 -0.02 0.63 16 31 H 0.01 0.70 7.31 -2.39 -0.02 0.69 16 32 H 0.02 0.78 6.18 -2.39 -0.01 0.76 16 33 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 34 H 0.05 1.90 7.34 -2.39 -0.02 1.89 16 35 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.10 1.79 6.19 -2.39 -0.01 1.78 16 37 H 0.11 1.65 7.25 -2.39 -0.02 1.63 16 38 H 0.16 1.90 4.51 -2.91 -0.01 1.89 16 39 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.17 0.60 7.02 -2.91 -0.02 0.58 16 41 H 0.22 1.77 7.29 -2.91 -0.02 1.75 16 42 H 0.29 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.11 3.29 7.75 -2.91 -0.02 3.27 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.95 6.02 -2.38 -0.01 1.94 16 Total: -1.00 -79.34 368.81 2.53 -76.80 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.03 Total: 7.17 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.70 Total: 19.40 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -8.08 Total: -119.89 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.15 Total: -29.73 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -79.34 2.53 -76.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972647621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.232 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds