Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99726 * 2 1 4 4 H 1.07997 * 119.99877 * 146.09417 * 3 2 1 5 5 C 1.38816 * 120.00057 * 326.08410 * 3 2 1 6 6 N 1.31617 * 119.99959 * 157.43535 * 5 3 2 7 7 Si 1.86807 * 119.99732 * 337.43965 * 5 3 2 8 8 H 1.48499 * 109.47221 * 94.47378 * 7 5 3 9 9 H 1.48501 * 109.46783 * 214.47281 * 7 5 3 10 10 H 1.48501 * 109.47365 * 334.47058 * 7 5 3 11 11 C 1.46499 * 120.00206 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88551 * 183.88352 * 11 2 1 13 13 C 1.55154 * 111.00212 * 60.00432 * 11 2 1 14 14 C 1.54333 * 102.94100 * 206.42291 * 13 11 2 15 15 N 1.47027 * 107.26733 * 22.19285 * 14 13 11 16 16 C 1.34772 * 125.64067 * 181.02067 * 15 14 13 17 17 O 1.21647 * 119.99562 * 180.02562 * 16 15 14 18 18 C 1.47097 * 120.00479 * 0.02715 * 16 15 14 19 19 C 1.42471 * 128.38243 * 358.04730 * 18 16 15 20 20 N 1.29885 * 106.40404 * 180.27324 * 19 18 16 21 21 O 1.20739 * 112.76245 * 359.74134 * 20 19 18 22 22 C 1.34238 * 111.95298 * 0.02562 * 21 20 19 23 23 C 1.47551 * 127.17893 * 180.02562 * 22 21 20 24 24 C 1.39701 * 120.15571 * 50.71801 * 23 22 21 25 25 C 1.37931 * 119.83449 * 179.74919 * 24 23 22 26 26 C 1.38376 * 120.15974 * 0.52923 * 25 24 23 27 27 C 1.38382 * 120.31883 * 359.74580 * 26 25 24 28 28 C 1.37925 * 120.15747 * 359.97438 * 27 26 25 29 29 C 1.47419 * 108.70525 * 1.28577 * 15 14 13 30 30 H 1.09000 * 109.47635 * 265.64260 * 1 2 3 31 31 H 1.08998 * 109.47250 * 25.64294 * 1 2 3 32 32 H 1.09005 * 109.46687 * 145.64136 * 1 2 3 33 33 H 0.96999 * 119.99680 * 179.97438 * 6 5 3 34 34 H 1.08992 * 110.72250 * 88.06439 * 13 11 2 35 35 H 1.08995 * 110.87462 * 324.85670 * 13 11 2 36 36 H 1.08995 * 109.88188 * 262.77985 * 14 13 11 37 37 H 1.08997 * 110.00647 * 141.67814 * 14 13 11 38 38 H 1.07992 * 126.79512 * 0.02562 * 19 18 16 39 39 H 1.07999 * 120.08306 * 359.97438 * 24 23 22 40 40 H 1.08004 * 119.91806 * 180.27254 * 25 24 23 41 41 H 1.08001 * 119.84157 * 179.72285 * 26 25 24 42 42 H 1.07999 * 119.92048 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.07875 * 179.97438 * 28 27 26 44 44 H 1.09008 * 110.36580 * 94.48096 * 29 15 14 45 45 H 1.08999 * 110.36973 * 216.80501 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0918 1.2655 0.5217 5 6 1.6326 2.2859 -0.6708 6 7 2.0102 3.5004 -0.3321 7 14 0.4010 2.0421 -2.0540 8 1 -0.9780 2.1547 -1.5145 9 1 0.6122 3.0813 -3.0936 10 1 0.5897 0.6967 -2.6535 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0971 0.0695 13 6 1.8484 -2.1129 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0265 -3.5577 0.6885 16 6 2.2132 -4.6280 1.4860 17 8 2.1218 -4.5102 2.6933 18 6 2.5274 -5.9386 0.8966 19 6 2.6384 -6.2854 -0.4808 20 7 2.9238 -7.5520 -0.5183 21 8 3.0130 -8.0435 0.5809 22 6 2.7914 -7.1440 1.5523 23 6 2.8165 -7.3799 3.0086 24 6 3.9088 -8.0224 3.5967 25 6 3.9277 -8.2349 4.9595 26 6 2.8634 -7.8232 5.7421 27 6 1.7756 -7.1913 5.1656 28 6 1.7455 -6.9670 3.8051 29 6 1.7020 -2.1935 1.1433 30 1 -0.3634 -0.0781 1.0247 31 1 -0.3634 0.9264 -0.4447 32 1 -0.3633 -0.8484 -0.5800 33 1 1.6492 4.2689 -0.8011 34 1 2.5044 -1.8570 -2.0855 35 1 0.8034 -1.9794 -1.5330 36 1 3.0982 -3.8814 -1.0965 37 1 1.3501 -4.2269 -1.1915 38 1 2.5069 -5.6266 -1.3264 39 1 4.7379 -8.3486 2.9864 40 1 4.7735 -8.7275 5.4161 41 1 2.8816 -7.9962 6.8080 42 1 0.9483 -6.8730 5.7825 43 1 0.8958 -6.4741 3.3564 44 1 0.6262 -2.0857 1.2822 45 1 2.2296 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972651951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 86.079988 kcal Electronic energy + Delta-G solvation = -29309.710724 eV Core-core repulsion = 25296.531088 eV Total energy + Delta-G solvation = -4013.179636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.11027 -41.16494 -40.01232 -38.96206 -36.74612 -35.23018 -34.15213 -33.76934 -31.93763 -31.77583 -30.73008 -29.77185 -28.12429 -26.65267 -25.00877 -24.58808 -23.84914 -23.27193 -22.62276 -21.02748 -20.51429 -19.08183 -18.98216 -18.84873 -18.50094 -17.83188 -17.19337 -16.82287 -16.73223 -16.06999 -15.72065 -15.67292 -15.29621 -15.13625 -14.80204 -14.67354 -14.42011 -14.39510 -14.30661 -14.08137 -13.92121 -13.80315 -13.41890 -13.09657 -12.79694 -12.45018 -12.40076 -12.33968 -12.26104 -12.11117 -12.02492 -11.74633 -11.58226 -11.43240 -11.24516 -10.96114 -10.67029 -9.90664 -9.80621 -9.58874 -8.87586 -8.20181 -5.57747 -0.55461 0.42434 0.47813 0.68749 1.33376 1.44584 1.50015 1.56005 1.87760 2.04533 2.42576 2.76268 3.00951 3.04779 3.29842 3.31810 3.42762 3.69652 3.76996 3.91150 3.98516 4.06672 4.09229 4.11132 4.25965 4.27231 4.34331 4.49798 4.50235 4.57432 4.59078 4.67420 4.74082 4.77309 4.89685 4.93105 4.99488 5.07115 5.12614 5.22819 5.32043 5.40115 5.46883 5.54122 5.88501 5.96217 6.14492 6.36888 6.88711 6.91893 6.98375 7.58452 7.97408 8.99397 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002658 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.667096 B =10529.796807 C =11486.669240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.607 5.607 3 C -0.263 4.263 4 H 0.043 0.957 5 C -0.026 4.026 6 N -0.951 5.951 7 Si 0.954 3.046 8 H -0.277 1.277 9 H -0.314 1.314 10 H -0.245 1.245 11 C 0.166 3.834 12 H 0.074 0.926 13 C -0.147 4.147 14 C 0.095 3.905 15 N -0.604 5.604 16 C 0.604 3.396 17 O -0.560 6.560 18 C -0.255 4.255 19 C 0.034 3.966 20 N -0.375 5.375 21 O 0.108 5.892 22 C 0.093 3.907 23 C -0.065 4.065 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.094 4.094 27 C -0.134 4.134 28 C -0.061 4.061 29 C 0.104 3.896 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.234 0.766 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -27.566 4.126 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.330 5.330 3 C -0.393 4.393 4 H 0.061 0.939 5 C -0.222 4.222 6 N -0.595 5.595 7 Si 0.783 3.217 8 H -0.204 1.204 9 H -0.243 1.243 10 H -0.169 1.169 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.187 4.187 14 C -0.027 4.027 15 N -0.336 5.336 16 C 0.394 3.606 17 O -0.440 6.440 18 C -0.262 4.262 19 C -0.145 4.145 20 N -0.081 5.081 21 O 0.048 5.952 22 C 0.027 3.973 23 C -0.066 4.066 24 C -0.109 4.109 25 C -0.145 4.145 26 C -0.112 4.112 27 C -0.152 4.152 28 C -0.080 4.080 29 C -0.020 4.020 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.250 0.750 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.243 -28.278 3.763 28.528 hybrid contribution -0.647 1.665 -0.244 1.803 sum -0.404 -26.613 3.519 26.848 Atomic orbital electron populations 1.21460 0.83478 0.99900 0.99325 1.43969 1.01397 1.01287 1.86340 1.18681 1.05900 0.87789 1.26894 0.93932 1.26063 1.01234 0.94569 1.00324 1.70009 1.48586 0.98597 1.42322 0.85754 0.78411 0.78057 0.79520 1.20434 1.24294 1.16887 1.21646 0.95863 0.84112 0.92610 0.90769 1.23164 1.03410 0.92911 0.99194 1.22569 1.03338 0.98412 0.78399 1.48166 1.68681 1.08232 1.08536 1.16535 0.76940 0.81972 0.85184 1.90820 1.53516 1.85083 1.14584 1.21295 1.15921 0.94886 0.94139 1.25948 0.98741 0.92241 0.97547 1.73566 1.20208 1.12780 1.01546 1.84898 1.65221 1.35199 1.09893 1.23316 0.95221 0.87277 0.91516 1.17696 0.98189 1.05503 0.85206 1.21501 0.96678 0.96236 0.96505 1.21437 0.99878 1.00486 0.92698 1.21755 0.92573 0.95250 1.01645 1.21345 1.00275 0.99724 0.93844 1.21136 0.96826 0.95457 0.94552 1.22608 1.00449 0.80317 0.98656 0.95773 0.94919 0.91471 0.92758 0.89004 0.90223 0.88879 0.88400 0.75011 0.84032 0.82390 0.82690 0.83932 0.86977 0.91170 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.00 8.09 127.77 1.03 5.03 16 2 N -0.61 -26.63 2.59 -694.61 -1.80 -28.42 16 3 C -0.26 -14.39 9.91 84.03 0.83 -13.56 16 4 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 5 C -0.03 -1.45 5.30 84.86 0.45 -1.00 16 6 N -0.95 -58.55 13.97 21.65 0.30 -58.24 16 7 Si 0.95 43.96 24.92 68.60 1.71 45.67 16 8 H -0.28 -12.21 6.62 99.48 0.66 -11.55 16 9 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 10 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 11 C 0.17 5.82 3.56 46.46 0.17 5.98 16 12 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 13 C -0.15 -3.80 6.52 31.78 0.21 -3.60 16 14 C 0.09 1.90 5.04 86.73 0.44 2.33 16 15 N -0.60 -16.50 3.32 -815.57 -2.71 -19.21 16 16 C 0.60 17.77 7.83 86.57 0.68 18.45 16 17 O -0.56 -19.79 14.24 -4.18 -0.06 -19.85 16 18 C -0.26 -6.25 6.26 -19.54 -0.12 -6.38 16 19 C 0.03 0.68 10.59 86.04 0.91 1.59 16 20 N -0.38 -8.35 11.98 -56.89 -0.68 -9.03 16 21 O 0.11 2.42 11.17 69.98 0.78 3.20 16 22 C 0.09 2.20 6.96 25.09 0.17 2.37 16 23 C -0.06 -1.46 5.44 -20.11 -0.11 -1.57 16 24 C -0.09 -1.61 9.79 22.55 0.22 -1.39 16 25 C -0.13 -1.77 10.03 22.23 0.22 -1.55 16 26 C -0.09 -1.33 10.04 22.34 0.22 -1.11 16 27 C -0.13 -2.44 10.03 22.23 0.22 -2.22 16 28 C -0.06 -1.41 7.90 22.55 0.18 -1.23 16 29 C 0.10 3.40 6.46 86.93 0.56 3.96 16 30 H 0.02 0.92 7.94 -2.39 -0.02 0.90 16 31 H 0.03 1.41 2.98 -2.39 -0.01 1.40 16 32 H 0.07 2.14 6.39 -2.38 -0.02 2.13 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.05 6.37 -2.39 -0.02 2.03 16 36 H 0.09 1.49 7.03 -2.39 -0.02 1.48 16 37 H 0.10 1.43 6.97 -2.39 -0.02 1.41 16 38 H 0.23 3.03 4.92 -2.91 -0.01 3.02 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.11 2.84 7.44 -2.91 -0.02 2.82 16 44 H 0.07 2.30 6.90 -2.38 -0.02 2.28 16 45 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 Total: -1.00 -71.75 362.46 4.82 -66.93 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.98 Total: 12.84 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.29 Total: 6.11 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -4.89 Total: -114.90 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.72 Total: -16.66 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.71 Total: 45.67 kcal Total: -71.75 4.82 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972651951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.014 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds