Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08005 * 119.99447 * 154.74197 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48505 * 109.46927 * 60.00157 * 7 5 3 9 9 H 1.48497 * 109.47163 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47291 * 300.00203 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64393 * 181.68684 * 11 2 1 13 13 C 1.55160 * 110.71899 * 305.02433 * 11 2 1 14 14 C 1.54910 * 101.58066 * 153.86642 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98680 * 14 13 11 16 16 C 1.34779 * 125.64981 * 204.09238 * 15 14 13 17 17 O 1.21605 * 119.99942 * 180.02562 * 16 15 14 18 18 C 1.47460 * 119.99951 * 0.04512 * 16 15 14 19 19 C 1.36235 * 126.36376 * 179.97438 * 18 16 15 20 20 O 1.34278 * 107.11896 * 179.97438 * 19 18 16 21 21 C 1.34476 * 108.17159 * 359.97438 * 20 19 18 22 22 C 1.47875 * 125.48530 * 180.02562 * 21 20 19 23 23 C 1.39548 * 120.13756 * 179.69963 * 22 21 20 24 24 C 1.37972 * 119.85779 * 179.74314 * 23 22 21 25 25 C 1.38350 * 120.13701 * 0.55384 * 24 23 22 26 26 C 1.38355 * 120.28938 * 359.70284 * 25 24 23 27 27 C 1.37967 * 120.14221 * 0.02562 * 26 25 24 28 28 N 1.30887 * 109.02131 * 359.76811 * 21 20 19 29 29 C 1.47027 * 108.70451 * 24.13157 * 15 14 13 30 30 H 1.08998 * 109.46931 * 84.50530 * 1 2 3 31 31 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 32 32 H 1.09004 * 109.46808 * 324.50817 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00516 * 271.94024 * 13 11 2 35 35 H 1.08999 * 111.00487 * 35.79233 * 13 11 2 36 36 H 1.09002 * 110.36570 * 204.15072 * 14 13 11 37 37 H 1.08999 * 110.46092 * 81.87425 * 14 13 11 38 38 H 1.07998 * 126.43922 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.07412 * 0.02562 * 23 22 21 40 40 H 1.07991 * 119.93279 * 180.25494 * 24 23 22 41 41 H 1.07994 * 119.85614 * 179.71515 * 25 24 23 42 42 H 1.07996 * 119.92712 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.07229 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.87907 * 239.52259 * 29 15 14 45 45 H 1.09001 * 109.88021 * 118.35282 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2305 0.3991 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.7177 3.7132 -1.4906 9 1 1.6745 4.9865 -1.2026 10 1 2.9738 4.3241 0.7352 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7506 -2.1611 1.1875 14 6 2.0637 -3.5786 0.6467 15 7 1.7323 -3.5167 -0.7885 16 6 1.4055 -4.5685 -1.5653 17 8 1.1503 -4.3992 -2.7421 18 6 1.3570 -5.9245 -0.9880 19 6 1.0437 -7.0734 -1.6497 20 8 1.1182 -8.0755 -0.7590 21 6 1.4714 -7.5548 0.4295 22 6 1.6640 -8.3212 1.6794 23 6 2.0385 -7.6654 2.8528 24 6 2.2114 -8.3854 4.0169 25 6 2.0254 -9.7563 4.0198 26 6 1.6592 -10.4133 2.8586 27 6 1.4777 -9.7041 1.6892 28 7 1.6226 -6.2611 0.3004 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3633 0.0984 -1.0229 31 1 -0.3634 -0.9351 0.4263 32 1 -0.3633 0.8368 0.5967 33 1 -0.1108 3.0959 -1.2802 34 1 2.3372 -1.9453 2.0805 35 1 0.6849 -2.0446 1.3844 36 1 1.4430 -4.3214 1.1477 37 1 3.1194 -3.8136 0.7824 38 1 0.7841 -7.1616 -2.6943 39 1 2.1883 -6.5958 2.8508 40 1 2.4973 -7.8785 4.9266 41 1 2.1664 -10.3161 4.9326 42 1 1.5159 -11.4837 2.8674 43 1 1.1914 -10.2180 0.7834 44 1 0.8540 -1.7931 -1.6236 45 1 2.5848 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972749739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 59.018237 kcal Electronic energy + Delta-G solvation = -28793.695896 eV Core-core repulsion = 24779.342774 eV Total energy + Delta-G solvation = -4014.353122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59650 -39.62251 -39.38550 -37.37889 -35.18935 -34.65990 -32.72689 -31.59329 -31.38427 -29.70666 -29.38748 -27.92904 -26.03327 -24.87025 -24.16056 -23.22221 -22.42940 -22.07754 -21.40119 -19.69540 -19.13436 -17.93702 -17.13992 -17.11333 -16.96364 -16.50314 -16.00617 -15.72040 -15.31772 -15.04434 -14.78552 -14.21751 -13.98149 -13.87167 -13.74189 -13.33675 -13.28414 -13.22352 -12.62285 -12.46208 -12.15887 -11.93749 -11.81411 -11.62885 -11.55663 -11.46952 -10.93864 -10.79560 -10.75063 -10.47706 -10.32629 -10.26268 -10.10371 -9.97726 -9.84821 -9.76460 -9.41598 -8.68075 -8.51520 -8.23686 -6.77774 -5.75357 -3.23390 0.27178 0.94921 1.16077 2.07507 2.23150 3.08980 3.31738 3.38668 3.44058 3.44546 3.46775 3.55595 4.41427 4.45805 4.49345 4.55793 4.66097 4.68811 4.95573 5.05437 5.14723 5.18125 5.30182 5.38817 5.44636 5.45451 5.58040 5.60056 5.67151 5.74218 5.94577 5.96812 5.99141 6.03296 6.06360 6.19977 6.39344 6.44168 6.46399 6.60367 6.69086 6.88732 6.93021 7.24077 7.48560 7.75760 7.78856 7.85559 8.29455 8.39801 9.22819 9.82921 10.33087 11.28667 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.002355 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.639704 B =11884.806678 C =12955.024557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.105 3.895 15 N -0.592 5.592 16 C 0.605 3.395 17 O -0.543 6.543 18 C -0.052 4.052 19 C 0.011 3.989 20 O -0.192 6.192 21 C 0.231 3.769 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.090 4.090 28 N -0.440 5.440 29 C 0.087 3.913 30 H 0.025 0.975 31 H -0.004 1.004 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.234 0.766 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -26.600 8.608 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.196 4.196 14 C -0.018 4.018 15 N -0.323 5.323 16 C 0.392 3.608 17 O -0.422 6.422 18 C -0.174 4.174 19 C -0.062 4.062 20 O -0.078 6.078 21 C 0.026 3.974 22 C -0.019 4.019 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.109 4.109 28 N -0.170 5.170 29 C -0.038 4.038 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.544 -25.932 8.338 27.358 hybrid contribution 0.224 0.465 -0.879 1.019 sum 2.768 -25.467 7.460 26.681 Atomic orbital electron populations 1.20890 0.82180 0.95556 0.99433 1.43899 1.02034 0.99832 1.85231 1.19178 0.99336 0.86092 1.34387 0.91208 1.25198 0.96533 0.98901 0.98499 1.70092 1.11057 1.28185 1.45747 0.86308 0.79320 0.82864 0.77879 1.20882 1.21604 1.20961 1.21368 0.96365 0.85885 0.90096 0.90330 1.23393 1.02719 0.93580 0.99860 1.22502 1.00551 0.98723 0.80034 1.48311 1.65285 1.07461 1.11272 1.16374 0.78055 0.81455 0.84934 1.90822 1.51389 1.84691 1.15260 1.21863 1.09096 0.96252 0.90176 1.25357 1.00797 0.84148 0.95942 1.84405 1.66450 1.38067 1.18861 1.23859 0.99954 0.87826 0.85766 1.17286 1.04988 0.92067 0.87570 1.21259 0.95764 1.01146 0.90613 1.21165 1.00351 0.94220 0.98079 1.21398 0.97468 0.94739 0.98376 1.21081 1.00317 1.00285 0.92359 1.21244 0.98207 0.92332 0.99130 1.71113 1.17800 1.10589 1.17500 1.23001 1.02489 0.78239 1.00030 0.95624 0.98598 0.92638 0.93550 0.90479 0.90533 0.89263 0.91843 0.75011 0.84115 0.84890 0.85444 0.85226 0.85124 0.90683 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 7.70 59.85 0.46 4.53 16 2 N -0.59 -14.60 2.94 -171.38 -0.50 -15.11 16 3 C -0.26 -7.04 9.61 -15.06 -0.14 -7.19 16 4 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 5 C 0.01 0.20 5.38 -17.43 -0.09 0.11 16 6 N -0.91 -26.27 10.11 55.49 0.56 -25.71 16 7 Si 0.91 21.68 29.56 -169.99 -5.02 16.65 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.52 3.44 -66.09 -0.23 3.29 16 12 H 0.08 1.56 7.94 -51.93 -0.41 1.15 16 13 C -0.16 -2.62 6.59 -24.58 -0.16 -2.78 16 14 C 0.10 1.60 6.13 -2.53 -0.02 1.59 16 15 N -0.59 -10.58 3.33 -171.76 -0.57 -11.16 16 16 C 0.61 10.82 7.85 -12.50 -0.10 10.72 16 17 O -0.54 -11.08 17.21 5.27 0.09 -10.99 16 18 C -0.05 -0.77 6.81 -83.08 -0.57 -1.33 16 19 C 0.01 0.13 11.94 30.01 0.36 0.49 16 20 O -0.19 -2.13 10.45 5.31 0.06 -2.07 16 21 C 0.23 2.71 7.88 -14.01 -0.11 2.60 16 22 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 23 C -0.07 -0.59 9.68 -39.19 -0.38 -0.97 16 24 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 25 C -0.10 -0.57 10.04 -39.50 -0.40 -0.97 16 26 C -0.12 -0.73 10.03 -39.64 -0.40 -1.12 16 27 C -0.09 -0.68 9.71 -39.19 -0.38 -1.06 16 28 N -0.44 -5.97 8.03 -8.26 -0.07 -6.04 16 29 C 0.09 1.75 6.51 -3.06 -0.02 1.73 16 30 H 0.03 0.69 7.38 -51.93 -0.38 0.31 16 31 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 32 H 0.05 1.49 7.02 -51.93 -0.36 1.13 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.38 6.14 -51.93 -0.32 1.06 16 36 H 0.09 1.30 6.16 -51.93 -0.32 0.98 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.23 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.14 1.23 7.82 -52.49 -0.41 0.82 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.84 7.89 -52.49 -0.41 0.42 16 44 H 0.07 1.71 7.07 -51.93 -0.37 1.34 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -32.57 374.51 -8.82 -41.39 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.81 Total: -0.27 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -3.19 Total: 7.66 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.58 Total: -58.01 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.15 Total: -13.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.57 -8.82 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.404 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds