Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08005 * 119.99447 * 154.74197 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48505 * 109.46927 * 60.00157 * 7 5 3 9 9 H 1.48497 * 109.47163 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47291 * 300.00203 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64393 * 181.68684 * 11 2 1 13 13 C 1.55160 * 110.71899 * 305.02433 * 11 2 1 14 14 C 1.54910 * 101.58066 * 153.86642 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98680 * 14 13 11 16 16 C 1.34779 * 125.64981 * 204.09238 * 15 14 13 17 17 O 1.21605 * 119.99942 * 180.02562 * 16 15 14 18 18 C 1.47460 * 119.99951 * 0.04512 * 16 15 14 19 19 C 1.36235 * 126.36376 * 179.97438 * 18 16 15 20 20 O 1.34278 * 107.11896 * 179.97438 * 19 18 16 21 21 C 1.34476 * 108.17159 * 359.97438 * 20 19 18 22 22 C 1.47875 * 125.48530 * 180.02562 * 21 20 19 23 23 C 1.39548 * 120.13756 * 179.69963 * 22 21 20 24 24 C 1.37972 * 119.85779 * 179.74314 * 23 22 21 25 25 C 1.38350 * 120.13701 * 0.55384 * 24 23 22 26 26 C 1.38355 * 120.28938 * 359.70284 * 25 24 23 27 27 C 1.37967 * 120.14221 * 0.02562 * 26 25 24 28 28 N 1.30887 * 109.02131 * 359.76811 * 21 20 19 29 29 C 1.47027 * 108.70451 * 24.13157 * 15 14 13 30 30 H 1.08998 * 109.46931 * 84.50530 * 1 2 3 31 31 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 32 32 H 1.09004 * 109.46808 * 324.50817 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00516 * 271.94024 * 13 11 2 35 35 H 1.08999 * 111.00487 * 35.79233 * 13 11 2 36 36 H 1.09002 * 110.36570 * 204.15072 * 14 13 11 37 37 H 1.08999 * 110.46092 * 81.87425 * 14 13 11 38 38 H 1.07998 * 126.43922 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.07412 * 0.02562 * 23 22 21 40 40 H 1.07991 * 119.93279 * 180.25494 * 24 23 22 41 41 H 1.07994 * 119.85614 * 179.71515 * 25 24 23 42 42 H 1.07996 * 119.92712 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.07229 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.87907 * 239.52259 * 29 15 14 45 45 H 1.09001 * 109.88021 * 118.35282 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2305 0.3991 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.7177 3.7132 -1.4906 9 1 1.6745 4.9865 -1.2026 10 1 2.9738 4.3241 0.7352 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7506 -2.1611 1.1875 14 6 2.0637 -3.5786 0.6467 15 7 1.7323 -3.5167 -0.7885 16 6 1.4055 -4.5685 -1.5653 17 8 1.1503 -4.3992 -2.7421 18 6 1.3570 -5.9245 -0.9880 19 6 1.0437 -7.0734 -1.6497 20 8 1.1182 -8.0755 -0.7590 21 6 1.4714 -7.5548 0.4295 22 6 1.6640 -8.3212 1.6794 23 6 2.0385 -7.6654 2.8528 24 6 2.2114 -8.3854 4.0169 25 6 2.0254 -9.7563 4.0198 26 6 1.6592 -10.4133 2.8586 27 6 1.4777 -9.7041 1.6892 28 7 1.6226 -6.2611 0.3004 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3633 0.0984 -1.0229 31 1 -0.3634 -0.9351 0.4263 32 1 -0.3633 0.8368 0.5967 33 1 -0.1108 3.0959 -1.2802 34 1 2.3372 -1.9453 2.0805 35 1 0.6849 -2.0446 1.3844 36 1 1.4430 -4.3214 1.1477 37 1 3.1194 -3.8136 0.7824 38 1 0.7841 -7.1616 -2.6943 39 1 2.1883 -6.5958 2.8508 40 1 2.4973 -7.8785 4.9266 41 1 2.1664 -10.3161 4.9326 42 1 1.5159 -11.4837 2.8674 43 1 1.1914 -10.2180 0.7834 44 1 0.8540 -1.7931 -1.6236 45 1 2.5848 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972749739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 38.848104 kcal Electronic energy + Delta-G solvation = -28794.570539 eV Core-core repulsion = 24779.342774 eV Total energy + Delta-G solvation = -4015.227764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53252 -41.04920 -39.93257 -38.96117 -36.64176 -36.01806 -33.57418 -33.29860 -31.90162 -31.30585 -30.29270 -29.48373 -28.09799 -26.21735 -24.95720 -24.40372 -23.77224 -23.10123 -22.20997 -20.92815 -20.69380 -19.00684 -18.95913 -18.14052 -18.00992 -17.44443 -17.32240 -16.82801 -16.54870 -16.35761 -15.78733 -15.63128 -15.09168 -14.98031 -14.73764 -14.61682 -14.38351 -14.34876 -14.12696 -13.88765 -13.76996 -13.34532 -13.20113 -12.72025 -12.57875 -12.57173 -12.41242 -12.38035 -12.25558 -12.14039 -12.05701 -11.91926 -11.73214 -11.41738 -11.32244 -10.89048 -10.60613 -9.91628 -9.78833 -9.35538 -8.80768 -7.85116 -5.35424 -0.42011 0.17076 0.45427 1.21198 1.36079 1.47488 1.50685 1.56688 1.77927 2.10708 2.49178 2.61405 2.87308 3.28026 3.39893 3.56513 3.65201 3.84399 3.98561 4.03023 4.05670 4.20250 4.27046 4.33363 4.35596 4.42207 4.45317 4.50233 4.59595 4.65819 4.76384 4.79359 4.91481 4.96946 5.04616 5.11870 5.17966 5.22329 5.32795 5.41550 5.42467 5.50619 5.57244 5.63982 5.74667 5.97238 6.25749 6.31982 6.42252 6.89785 7.13786 7.82109 8.28555 9.18177 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.002355 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.639704 B =11884.806678 C =12955.024557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.604 5.604 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.052 4.052 6 N -0.940 5.940 7 Si 0.974 3.026 8 H -0.277 1.277 9 H -0.297 1.297 10 H -0.272 1.272 11 C 0.169 3.831 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.116 3.884 15 N -0.597 5.597 16 C 0.604 3.396 17 O -0.578 6.578 18 C -0.086 4.086 19 C 0.037 3.963 20 O -0.185 6.185 21 C 0.240 3.760 22 C -0.046 4.046 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.093 4.093 28 N -0.459 5.459 29 C 0.098 3.902 30 H -0.007 1.007 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.139 0.861 44 H 0.042 0.958 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 -29.453 10.727 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.203 1.203 9 H -0.224 1.224 10 H -0.198 1.198 11 C 0.060 3.940 12 H 0.104 0.896 13 C -0.180 4.180 14 C -0.005 4.005 15 N -0.328 5.328 16 C 0.393 3.607 17 O -0.459 6.459 18 C -0.207 4.207 19 C -0.037 4.037 20 O -0.071 6.071 21 C 0.034 3.966 22 C -0.047 4.047 23 C -0.101 4.101 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.113 4.113 28 N -0.189 5.189 29 C -0.027 4.027 30 H 0.011 0.989 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.277 0.723 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.157 0.843 44 H 0.060 0.940 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.920 -28.820 10.495 30.921 hybrid contribution -0.175 1.144 -1.448 1.854 sum 3.745 -27.676 9.047 29.357 Atomic orbital electron populations 1.20511 0.82830 0.95591 0.97080 1.44067 1.01964 1.00985 1.85582 1.19586 0.99608 0.86975 1.33527 0.90207 1.26002 0.97440 1.02329 0.98886 1.70289 1.12552 1.28570 1.47193 0.85251 0.77723 0.78749 0.78162 1.20314 1.22371 1.19758 1.21538 0.96372 0.84620 0.91476 0.89561 1.23265 1.02223 0.93385 0.99174 1.22547 1.01806 0.97840 0.78348 1.48352 1.65613 1.06468 1.12364 1.16782 0.76909 0.82525 0.84531 1.90788 1.52862 1.85506 1.16757 1.21460 1.12547 0.95228 0.91422 1.25837 0.97999 0.83192 0.96708 1.84450 1.66264 1.37635 1.18754 1.24343 0.98391 0.87487 0.86383 1.17467 1.07408 0.92936 0.86932 1.21335 0.96442 1.01069 0.91226 1.21445 0.99873 0.94872 0.98004 1.21807 0.95549 0.94497 0.99413 1.21444 0.99214 1.01621 0.91705 1.21440 0.97915 0.91585 1.00315 1.71008 1.19196 1.11691 1.16984 1.22603 1.00313 0.80071 0.99706 0.98895 0.96166 0.95159 0.94267 0.88125 0.91720 0.88170 0.90062 0.72303 0.84956 0.83000 0.82592 0.82562 0.84307 0.93985 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 7.70 127.77 0.98 10.52 16 2 N -0.60 -30.47 2.94 -696.12 -2.05 -32.52 16 3 C -0.27 -14.54 9.61 84.03 0.81 -13.73 16 4 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 5 C -0.05 -2.91 5.38 84.86 0.46 -2.45 16 6 N -0.94 -56.38 10.11 21.65 0.22 -56.17 16 7 Si 0.97 45.10 29.56 68.60 2.03 47.13 16 8 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 C 0.17 6.85 3.44 46.18 0.16 7.00 16 12 H 0.09 3.36 7.94 -2.39 -0.02 3.34 16 13 C -0.14 -4.57 6.59 31.99 0.21 -4.36 16 14 C 0.12 3.42 6.13 86.86 0.53 3.96 16 15 N -0.60 -21.51 3.33 -815.59 -2.71 -24.23 16 16 C 0.60 21.86 7.85 86.67 0.68 22.54 16 17 O -0.58 -24.24 17.21 -4.05 -0.07 -24.31 16 18 C -0.09 -2.49 6.81 40.50 0.28 -2.21 16 19 C 0.04 0.81 11.94 67.35 0.80 1.61 16 20 O -0.19 -3.81 10.45 -3.93 -0.04 -3.85 16 21 C 0.24 5.35 7.88 87.39 0.69 6.03 16 22 C -0.05 -0.81 5.87 -20.09 -0.12 -0.93 16 23 C -0.08 -1.28 9.68 22.52 0.22 -1.06 16 24 C -0.12 -1.30 10.03 22.23 0.22 -1.08 16 25 C -0.09 -0.73 10.04 22.32 0.22 -0.50 16 26 C -0.12 -1.03 10.03 22.23 0.22 -0.81 16 27 C -0.09 -1.19 9.71 22.52 0.22 -0.97 16 28 N -0.46 -12.10 8.03 -294.26 -2.36 -14.46 16 29 C 0.10 4.08 6.51 86.73 0.56 4.65 16 30 H -0.01 -0.42 7.38 -2.39 -0.02 -0.44 16 31 H 0.02 0.92 6.13 -2.39 -0.01 0.90 16 32 H 0.03 1.68 7.02 -2.39 -0.02 1.66 16 33 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 34 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.06 2.28 6.14 -2.39 -0.01 2.26 16 36 H 0.10 2.81 6.16 -2.39 -0.01 2.79 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.26 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.13 2.20 7.82 -2.91 -0.02 2.18 16 40 H 0.15 0.93 8.06 -2.92 -0.02 0.91 16 41 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 42 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.14 1.45 7.89 -2.91 -0.02 1.43 16 44 H 0.04 2.02 7.07 -2.39 -0.02 2.00 16 45 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -73.05 374.51 3.18 -69.87 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.02 Total: 10.32 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 7.15 Total: 28.21 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.90 Total: -127.37 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.11 Total: -28.16 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.05 3.18 -69.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.723 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds