Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21609 * 120.00006 * 179.97438 * 16 15 14 18 18 C 1.47464 * 120.00249 * 359.96887 * 16 15 14 19 19 C 1.36237 * 126.36427 * 179.71868 * 18 16 15 20 20 O 1.34278 * 107.11730 * 179.84297 * 19 18 16 21 21 C 1.34473 * 108.17163 * 0.41998 * 20 19 18 22 22 C 1.47879 * 125.49087 * 179.69560 * 21 20 19 23 23 C 1.39548 * 120.14323 * 179.76426 * 22 21 20 24 24 C 1.37959 * 119.85543 * 179.78776 * 23 22 21 25 25 C 1.38349 * 120.14457 * 0.49843 * 24 23 22 26 26 C 1.38355 * 120.28636 * 359.73498 * 25 24 23 27 27 C 1.37968 * 120.13878 * 0.02562 * 26 25 24 28 28 N 1.30893 * 109.02096 * 359.73542 * 21 20 19 29 29 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 30 30 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 31 31 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 32 32 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 33 33 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 34 34 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 35 35 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 36 36 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 37 37 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 38 38 H 1.07993 * 126.43736 * 359.97438 * 19 18 16 39 39 H 1.08005 * 120.06770 * 0.02573 * 23 22 21 40 40 H 1.08001 * 119.92934 * 180.20643 * 24 23 22 41 41 H 1.08000 * 119.86106 * 179.76304 * 25 24 23 42 42 H 1.08000 * 119.93325 * 180.02562 * 26 25 24 43 43 H 1.08010 * 120.06878 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.87950 * 120.47256 * 29 15 14 45 45 H 1.08993 * 109.88934 * 241.64504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1502 -4.3994 2.7418 18 6 1.3571 -5.9246 0.9875 19 6 1.0492 -7.0743 1.6504 20 8 1.1177 -8.0755 0.7582 21 6 1.4703 -7.5546 -0.4303 22 6 1.6627 -8.3208 -1.6804 23 6 2.0258 -7.6633 -2.8565 24 6 2.2079 -8.3845 -4.0184 25 6 2.0213 -9.7553 -4.0217 26 6 1.6566 -10.4127 -2.8601 27 6 1.4761 -9.7036 -1.6904 28 7 1.6167 -6.2602 -0.3023 29 6 1.8183 -2.1177 1.2322 30 1 -0.3634 0.0929 1.0234 31 1 -0.3634 0.8398 -0.5923 32 1 -0.3632 -0.9329 -0.4312 33 1 0.0108 3.0589 1.5212 34 1 2.3364 -1.9478 -2.0838 35 1 0.6843 -2.0464 -1.3869 36 1 3.1200 -3.8116 -0.7827 37 1 1.4446 -4.3227 -1.1476 38 1 0.7955 -7.1633 2.6963 39 1 2.1676 -6.5926 -2.8562 40 1 2.4922 -7.8773 -4.9285 41 1 2.1614 -10.3149 -4.9347 42 1 1.5129 -11.4830 -2.8691 43 1 1.1918 -10.2180 -0.7842 44 1 0.8541 -1.7932 1.6234 45 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972749740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 56.646049 kcal Electronic energy + Delta-G solvation = -28787.649440 eV Core-core repulsion = 24773.193452 eV Total energy + Delta-G solvation = -4014.455987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.59693 -39.61822 -39.38667 -37.37346 -35.18966 -34.65669 -32.72720 -31.58320 -31.38592 -29.72899 -29.38871 -27.95324 -26.03167 -24.87716 -24.16417 -23.23124 -22.45640 -22.08178 -21.40365 -19.69718 -19.15109 -17.93743 -17.13490 -17.10419 -16.94551 -16.50317 -16.00760 -15.72482 -15.31886 -15.04189 -14.76748 -14.22071 -13.99294 -13.87436 -13.75518 -13.34026 -13.29800 -13.24537 -12.65403 -12.48364 -12.12682 -11.94162 -11.83132 -11.64440 -11.56101 -11.47896 -10.91683 -10.86940 -10.74553 -10.49662 -10.44080 -10.21151 -10.10267 -9.97486 -9.84077 -9.74093 -9.41824 -8.68065 -8.56808 -8.23525 -6.79104 -5.75059 -3.23003 0.27044 0.94749 1.16127 2.07439 2.23103 3.09114 3.31786 3.37330 3.44510 3.46546 3.46915 3.55641 4.41304 4.46130 4.49417 4.55773 4.66087 4.68603 4.95386 5.05286 5.14195 5.18046 5.30104 5.38703 5.41572 5.44928 5.58000 5.61001 5.66494 5.72575 5.94360 5.96169 5.98823 6.02683 6.06051 6.19705 6.39040 6.43964 6.45270 6.59809 6.68483 6.84615 6.91105 7.24019 7.33217 7.72428 7.78943 7.79290 8.29514 8.37058 9.19409 9.82210 10.31837 11.29051 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002363 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.126035 B =11844.066682 C =13003.228543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.104 3.896 15 N -0.592 5.592 16 C 0.605 3.395 17 O -0.543 6.543 18 C -0.052 4.052 19 C 0.011 3.989 20 O -0.192 6.192 21 C 0.231 3.769 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.090 4.090 28 N -0.440 5.440 29 C 0.087 3.913 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.004 0.996 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 -26.636 -9.203 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.019 4.019 15 N -0.324 5.324 16 C 0.392 3.608 17 O -0.421 6.421 18 C -0.174 4.174 19 C -0.062 4.062 20 O -0.078 6.078 21 C 0.026 3.974 22 C -0.019 4.019 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.109 4.109 28 N -0.170 5.170 29 C -0.037 4.037 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.250 0.750 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.276 -25.981 -8.934 27.568 hybrid contribution 0.068 0.520 0.656 0.840 sum 2.344 -25.461 -8.277 26.875 Atomic orbital electron populations 1.20805 0.82539 0.95659 0.99654 1.43938 1.01859 0.99935 1.84781 1.19254 0.98911 0.85216 1.35628 0.91151 1.25077 0.98056 0.98696 0.97675 1.70090 1.20605 1.27338 1.36567 0.86170 0.78492 0.84189 0.77570 1.20239 1.21592 1.21715 1.21439 0.96406 0.85869 0.90071 0.90292 1.23431 1.02634 0.93608 0.99811 1.22498 1.00568 0.98722 0.80065 1.48316 1.65297 1.07485 1.11252 1.16378 0.78065 0.81451 0.84940 1.90825 1.51355 1.84682 1.15249 1.21868 1.09180 0.96242 0.90089 1.25359 1.00809 0.84175 0.95901 1.84405 1.66417 1.38143 1.18815 1.23862 0.99968 0.87808 0.85777 1.17287 1.05034 0.92059 0.87528 1.21255 0.95794 1.01134 0.90599 1.21163 1.00325 0.94213 0.98120 1.21399 0.97466 0.94747 0.98367 1.21083 1.00324 1.00280 0.92355 1.21246 0.98176 0.92351 0.99140 1.71111 1.17817 1.10576 1.17508 1.23014 1.02550 0.78172 1.00008 0.94906 0.94004 0.97783 0.93676 0.90422 0.90600 0.91855 0.89232 0.75009 0.84116 0.84892 0.85443 0.85225 0.85122 0.90640 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 7.75 59.85 0.46 4.34 16 2 N -0.58 -14.42 2.93 -171.21 -0.50 -14.93 16 3 C -0.26 -7.04 9.59 -15.06 -0.14 -7.18 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 5 C 0.00 0.11 5.07 -17.43 -0.09 0.02 16 6 N -0.90 -26.29 10.83 55.49 0.60 -25.69 16 7 Si 0.91 21.68 29.58 -169.99 -5.03 16.66 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.17 3.49 3.45 -65.93 -0.23 3.27 16 12 H 0.08 1.57 7.93 -51.93 -0.41 1.16 16 13 C -0.15 -2.58 6.61 -24.42 -0.16 -2.74 16 14 C 0.10 1.59 6.13 -2.53 -0.02 1.57 16 15 N -0.59 -10.58 3.33 -171.78 -0.57 -11.15 16 16 C 0.60 10.82 7.85 -12.50 -0.10 10.72 16 17 O -0.54 -11.10 17.21 5.27 0.09 -11.01 16 18 C -0.05 -0.76 6.81 -83.08 -0.57 -1.33 16 19 C 0.01 0.13 11.94 30.01 0.36 0.49 16 20 O -0.19 -2.13 10.45 5.31 0.06 -2.07 16 21 C 0.23 2.70 7.88 -14.01 -0.11 2.59 16 22 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 23 C -0.07 -0.59 9.68 -39.20 -0.38 -0.97 16 24 C -0.12 -0.79 10.03 -39.64 -0.40 -1.18 16 25 C -0.10 -0.57 10.04 -39.50 -0.40 -0.97 16 26 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 27 C -0.09 -0.68 9.71 -39.19 -0.38 -1.06 16 28 N -0.44 -5.96 8.03 -8.26 -0.07 -6.03 16 29 C 0.09 1.75 6.51 -3.06 -0.02 1.73 16 30 H 0.03 0.89 7.25 -51.93 -0.38 0.51 16 31 H 0.04 1.09 7.42 -51.93 -0.39 0.71 16 32 H 0.00 0.08 6.13 -51.93 -0.32 -0.24 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.34 6.15 -51.93 -0.32 1.03 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.30 6.14 -51.93 -0.32 0.98 16 38 H 0.23 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.14 1.22 7.82 -52.48 -0.41 0.81 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.83 7.89 -52.48 -0.41 0.42 16 44 H 0.08 1.73 7.06 -51.93 -0.37 1.36 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -32.78 375.23 -8.77 -41.55 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.83 Total: -0.39 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -3.18 Total: 7.41 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.54 Total: -57.80 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.15 Total: -13.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.78 -8.77 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.200 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds