Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00157 * 2 1 4 4 H 1.07999 * 120.00389 * 203.44418 * 3 2 1 5 5 C 1.38820 * 119.99717 * 23.43570 * 3 2 1 6 6 N 1.31620 * 119.99861 * 14.54106 * 5 3 2 7 7 Si 1.86797 * 119.99629 * 194.53942 * 5 3 2 8 8 H 1.48494 * 109.47759 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47094 * 120.00217 * 7 5 3 10 10 H 1.48504 * 109.46722 * 239.99832 * 7 5 3 11 11 C 1.46501 * 120.00483 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64530 * 178.31324 * 11 2 1 13 13 C 1.55451 * 110.70262 * 55.00289 * 11 2 1 14 14 C 1.54909 * 101.45155 * 206.14464 * 13 11 2 15 15 N 1.47419 * 104.92582 * 37.00813 * 14 13 11 16 16 C 1.34780 * 125.64549 * 155.84107 * 15 14 13 17 17 O 1.21609 * 120.00006 * 179.97438 * 16 15 14 18 18 C 1.47464 * 120.00249 * 359.96887 * 16 15 14 19 19 C 1.36237 * 126.36427 * 179.71868 * 18 16 15 20 20 O 1.34278 * 107.11730 * 179.84297 * 19 18 16 21 21 C 1.34473 * 108.17163 * 0.41998 * 20 19 18 22 22 C 1.47879 * 125.49087 * 179.69560 * 21 20 19 23 23 C 1.39548 * 120.14323 * 179.76426 * 22 21 20 24 24 C 1.37959 * 119.85543 * 179.78776 * 23 22 21 25 25 C 1.38349 * 120.14457 * 0.49843 * 24 23 22 26 26 C 1.38355 * 120.28636 * 359.73498 * 25 24 23 27 27 C 1.37968 * 120.13878 * 0.02562 * 26 25 24 28 28 N 1.30893 * 109.02096 * 359.73542 * 21 20 19 29 29 C 1.47022 * 108.70794 * 335.81104 * 15 14 13 30 30 H 1.08995 * 109.47571 * 275.18944 * 1 2 3 31 31 H 1.09001 * 109.47219 * 35.19748 * 1 2 3 32 32 H 1.09000 * 109.46628 * 155.19390 * 1 2 3 33 33 H 0.96999 * 119.99291 * 179.97438 * 6 5 3 34 34 H 1.09003 * 111.11162 * 88.09664 * 13 11 2 35 35 H 1.08999 * 111.01502 * 324.15487 * 13 11 2 36 36 H 1.08999 * 110.36789 * 278.10956 * 14 13 11 37 37 H 1.08997 * 110.36538 * 155.90474 * 14 13 11 38 38 H 1.07993 * 126.43736 * 359.97438 * 19 18 16 39 39 H 1.08005 * 120.06770 * 0.02573 * 23 22 21 40 40 H 1.08001 * 119.92934 * 180.20643 * 24 23 22 41 41 H 1.08000 * 119.86106 * 179.76304 * 25 24 23 42 42 H 1.08000 * 119.93325 * 180.02562 * 26 25 24 43 43 H 1.08010 * 120.06878 * 180.02562 * 27 26 25 44 44 H 1.09001 * 109.87950 * 120.47256 * 29 15 14 45 45 H 1.08993 * 109.88934 * 241.64504 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5415 2.3385 0.4782 6 7 0.4356 2.2535 1.1868 7 14 2.2926 4.0100 0.1158 8 1 3.5246 3.8341 -0.6943 9 1 1.3180 4.8374 -0.6397 10 1 2.6319 4.6875 1.3930 11 6 2.1976 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0295 13 6 1.7502 -2.1622 -1.1902 14 6 2.0639 -3.5785 -0.6469 15 7 1.7324 -3.5167 0.7882 16 6 1.4055 -4.5686 1.5649 17 8 1.1502 -4.3994 2.7418 18 6 1.3571 -5.9246 0.9875 19 6 1.0492 -7.0743 1.6504 20 8 1.1177 -8.0755 0.7582 21 6 1.4703 -7.5546 -0.4303 22 6 1.6627 -8.3208 -1.6804 23 6 2.0258 -7.6633 -2.8565 24 6 2.2079 -8.3845 -4.0184 25 6 2.0213 -9.7553 -4.0217 26 6 1.6566 -10.4127 -2.8601 27 6 1.4761 -9.7036 -1.6904 28 7 1.6167 -6.2602 -0.3023 29 6 1.8183 -2.1177 1.2322 30 1 -0.3634 0.0929 1.0234 31 1 -0.3634 0.8398 -0.5923 32 1 -0.3632 -0.9329 -0.4312 33 1 0.0108 3.0589 1.5212 34 1 2.3364 -1.9478 -2.0838 35 1 0.6843 -2.0464 -1.3869 36 1 3.1200 -3.8116 -0.7827 37 1 1.4446 -4.3227 -1.1476 38 1 0.7955 -7.1633 2.6963 39 1 2.1676 -6.5926 -2.8562 40 1 2.4922 -7.8773 -4.9285 41 1 2.1614 -10.3149 -4.9347 42 1 1.5129 -11.4830 -2.8691 43 1 1.1918 -10.2180 -0.7842 44 1 0.8541 -1.7932 1.6234 45 1 2.5848 -2.0190 2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972749740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 36.217095 kcal Electronic energy + Delta-G solvation = -28788.535305 eV Core-core repulsion = 24773.193452 eV Total energy + Delta-G solvation = -4015.341853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.53297 -41.04506 -39.93234 -38.95610 -36.63581 -36.01608 -33.57049 -33.29963 -31.90142 -31.32425 -30.29264 -29.50493 -28.08173 -26.23335 -24.96328 -24.42379 -23.77604 -23.09910 -22.21036 -20.93969 -20.69556 -18.99476 -18.93821 -18.13942 -18.01063 -17.44124 -17.32237 -16.82281 -16.54400 -16.35934 -15.78960 -15.65898 -15.12638 -14.99418 -14.73644 -14.62134 -14.41526 -14.34823 -14.10165 -13.88631 -13.75281 -13.38551 -13.20710 -12.79690 -12.58506 -12.56426 -12.42990 -12.38154 -12.28604 -12.11052 -12.03128 -11.89127 -11.74313 -11.41126 -11.32000 -10.89025 -10.65181 -9.91573 -9.78830 -9.35529 -8.83069 -7.84443 -5.35436 -0.41992 0.17057 0.45536 1.21210 1.36041 1.47425 1.48554 1.59519 1.77892 2.10666 2.49819 2.61467 2.87394 3.26823 3.40466 3.54193 3.65189 3.83465 3.98716 4.03143 4.05751 4.20249 4.26288 4.33191 4.35582 4.41745 4.45256 4.50284 4.59536 4.65818 4.75289 4.77517 4.91616 4.96881 5.04284 5.11934 5.15157 5.20357 5.28591 5.38548 5.41747 5.50693 5.57319 5.64087 5.66843 5.97309 6.25660 6.30157 6.42392 6.89808 7.11126 7.81227 8.27270 9.18603 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002363 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.126035 B =11844.066682 C =13003.228543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.599 5.599 3 C -0.265 4.265 4 H 0.079 0.921 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.973 3.027 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.295 1.295 11 C 0.167 3.833 12 H 0.085 0.915 13 C -0.139 4.139 14 C 0.115 3.885 15 N -0.597 5.597 16 C 0.603 3.397 17 O -0.578 6.578 18 C -0.086 4.086 19 C 0.037 3.963 20 O -0.185 6.185 21 C 0.240 3.760 22 C -0.046 4.046 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.093 4.093 28 N -0.459 5.459 29 C 0.099 3.901 30 H -0.001 1.001 31 H 0.019 0.981 32 H 0.030 0.970 33 H 0.248 0.752 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.261 0.739 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.139 0.861 44 H 0.042 0.958 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -29.483 -11.658 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.320 5.320 3 C -0.395 4.395 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.801 3.199 8 H -0.185 1.185 9 H -0.218 1.218 10 H -0.223 1.223 11 C 0.059 3.941 12 H 0.103 0.897 13 C -0.179 4.179 14 C -0.006 4.006 15 N -0.328 5.328 16 C 0.392 3.608 17 O -0.459 6.459 18 C -0.206 4.206 19 C -0.038 4.038 20 O -0.071 6.071 21 C 0.034 3.966 22 C -0.047 4.047 23 C -0.101 4.101 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.113 4.113 28 N -0.189 5.189 29 C -0.027 4.027 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.277 0.723 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.157 0.843 44 H 0.060 0.940 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.506 -28.864 -11.429 31.242 hybrid contribution -0.280 1.190 1.349 1.821 sum 3.226 -27.674 -10.079 29.629 Atomic orbital electron populations 1.20472 0.83013 0.95916 0.97358 1.44117 1.01884 1.01026 1.85010 1.19644 0.99207 0.86183 1.34478 0.90308 1.25895 0.98787 1.02250 0.98022 1.70269 1.22245 1.27759 1.38184 0.85125 0.78084 0.79682 0.77049 1.18531 1.21841 1.22261 1.21615 0.96369 0.84672 0.91483 0.89661 1.23304 1.02280 0.93238 0.99053 1.22554 1.01811 0.97945 0.78330 1.48354 1.65606 1.06446 1.12381 1.16792 0.76912 0.82538 0.84532 1.90791 1.52858 1.85510 1.16782 1.21455 1.12639 0.95194 0.91343 1.25834 0.98014 0.83226 0.96676 1.84449 1.66236 1.37705 1.18710 1.24348 0.98390 0.87468 0.86393 1.17468 1.07467 0.92921 0.86886 1.21334 0.96462 1.01066 0.91196 1.21443 0.99831 0.94859 0.98056 1.21807 0.95546 0.94512 0.99400 1.21445 0.99228 1.01613 0.91706 1.21442 0.97888 0.91613 1.00322 1.71004 1.19214 1.11675 1.16964 1.22610 1.00264 0.80090 0.99704 0.98267 0.96236 0.95149 0.94270 0.87974 0.91587 0.90124 0.88082 0.72325 0.84931 0.82988 0.82593 0.82572 0.84318 0.93990 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.75 127.77 0.99 10.01 16 2 N -0.60 -30.04 2.93 -695.58 -2.04 -32.08 16 3 C -0.27 -14.41 9.59 84.04 0.81 -13.60 16 4 H 0.08 4.07 7.85 -2.91 -0.02 4.05 16 5 C -0.05 -3.05 5.07 84.86 0.43 -2.62 16 6 N -0.94 -56.63 10.83 21.65 0.23 -56.40 16 7 Si 0.97 45.13 29.58 68.60 2.03 47.16 16 8 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 C 0.17 6.78 3.45 46.28 0.16 6.94 16 12 H 0.09 3.34 7.93 -2.39 -0.02 3.32 16 13 C -0.14 -4.45 6.61 32.09 0.21 -4.24 16 14 C 0.12 3.37 6.13 86.86 0.53 3.90 16 15 N -0.60 -21.53 3.33 -815.63 -2.71 -24.24 16 16 C 0.60 21.91 7.85 86.67 0.68 22.59 16 17 O -0.58 -24.39 17.21 -4.06 -0.07 -24.46 16 18 C -0.09 -2.48 6.81 40.50 0.28 -2.21 16 19 C 0.04 0.80 11.94 67.35 0.80 1.61 16 20 O -0.19 -3.81 10.45 -3.90 -0.04 -3.85 16 21 C 0.24 5.33 7.88 87.39 0.69 6.02 16 22 C -0.05 -0.81 5.87 -20.09 -0.12 -0.93 16 23 C -0.08 -1.26 9.68 22.52 0.22 -1.04 16 24 C -0.12 -1.28 10.03 22.23 0.22 -1.06 16 25 C -0.09 -0.72 10.04 22.32 0.22 -0.49 16 26 C -0.12 -1.02 10.03 22.23 0.22 -0.80 16 27 C -0.09 -1.19 9.71 22.52 0.22 -0.97 16 28 N -0.46 -12.05 8.03 -294.26 -2.36 -14.42 16 29 C 0.10 4.12 6.51 86.73 0.56 4.68 16 30 H 0.00 -0.06 7.25 -2.39 -0.02 -0.07 16 31 H 0.02 1.04 7.42 -2.39 -0.02 1.02 16 32 H 0.03 1.35 6.13 -2.39 -0.01 1.33 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.07 2.27 6.15 -2.39 -0.01 2.25 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.10 2.80 6.14 -2.39 -0.01 2.79 16 38 H 0.26 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.13 2.18 7.82 -2.91 -0.02 2.16 16 40 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.14 1.45 7.89 -2.91 -0.02 1.43 16 44 H 0.04 2.03 7.06 -2.39 -0.02 2.01 16 45 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -73.61 375.23 3.19 -70.42 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.01 Total: 10.08 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 7.13 Total: 27.78 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -6.88 Total: -127.13 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.11 Total: -28.31 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.61 3.19 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972749740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.635 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds