Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99771 * 2 1 4 4 O 1.21722 * 119.99737 * 174.80333 * 3 2 1 5 5 C 1.46402 * 119.99824 * 355.07873 * 3 2 1 6 6 O 1.35372 * 126.81997 * 353.74918 * 5 3 2 7 7 C 1.33660 * 107.95226 * 179.97438 * 6 5 3 8 8 N 1.30349 * 109.73038 * 359.97438 * 7 6 5 9 9 C 1.34552 * 109.01460 * 359.76508 * 8 7 6 10 10 C 1.48135 * 126.53043 * 180.23558 * 9 8 7 11 11 C 1.39471 * 120.13315 * 135.20219 * 10 9 8 12 12 C 1.37983 * 119.86050 * 179.76816 * 11 10 9 13 13 C 1.38341 * 120.13356 * 0.50391 * 12 11 10 14 14 C 1.38349 * 120.27393 * 359.74742 * 13 12 11 15 15 C 1.37980 * 120.13064 * 0.02562 * 14 13 12 16 16 C 1.46501 * 120.00359 * 179.97438 * 2 1 3 17 17 C 1.53785 * 113.61269 * 39.13861 * 16 2 1 18 18 C 1.53959 * 87.01787 * 220.04725 * 17 16 2 19 19 N 1.46497 * 113.74177 * 139.94235 * 18 17 16 20 20 C 1.36938 * 120.00228 * 107.40414 * 19 18 17 21 21 H 1.07998 * 119.99594 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00284 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00204 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47211 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47449 * 119.99873 * 24 22 20 27 27 H 1.48505 * 109.47174 * 239.99945 * 24 22 20 28 28 C 1.53776 * 113.61449 * 301.53079 * 16 2 1 29 29 H 1.08997 * 109.46967 * 84.73978 * 1 2 3 30 30 H 1.09006 * 109.46383 * 204.73702 * 1 2 3 31 31 H 1.08997 * 109.47077 * 324.73260 * 1 2 3 32 32 H 1.08003 * 125.13201 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.06932 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.93196 * 180.25370 * 12 11 10 35 35 H 1.08007 * 119.86398 * 179.76842 * 13 12 11 36 36 H 1.07998 * 119.93014 * 180.02562 * 14 13 12 37 37 H 1.08004 * 120.06552 * 180.02562 * 15 14 13 38 38 H 1.08997 * 112.85068 * 170.32691 * 16 2 1 39 39 H 1.09002 * 113.60920 * 334.56639 * 17 16 2 40 40 H 1.08995 * 113.61732 * 105.47077 * 17 16 2 41 41 H 1.08997 * 113.53463 * 270.81230 * 18 17 16 42 42 H 0.97006 * 120.00136 * 287.40388 * 19 18 17 43 43 H 0.96996 * 119.99970 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.61515 * 254.52828 * 28 16 2 45 45 H 1.09004 * 113.61615 * 25.42782 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3523 1.1694 0.0955 5 6 1.4108 2.4328 -0.1088 6 8 0.0850 2.5893 -0.3328 7 6 -0.1762 3.8998 -0.3609 8 7 0.9233 4.5719 -0.1645 9 6 1.9410 3.7081 0.0038 10 6 3.3588 4.0544 0.2573 11 6 4.0807 3.3757 1.2389 12 6 5.4024 3.6997 1.4671 13 6 6.0086 4.7024 0.7317 14 6 5.2963 5.3828 -0.2398 15 6 3.9754 5.0648 -0.4804 16 6 2.1976 -1.2687 0.0006 17 6 1.5592 -2.3491 -0.8884 18 6 1.9076 -3.3556 0.2233 19 7 0.8616 -4.3522 0.4656 20 6 1.0453 -5.6489 0.0654 21 1 1.9612 -5.9367 -0.4292 22 6 0.0540 -6.5931 0.2946 23 7 -1.0625 -6.2422 0.8970 24 14 0.3043 -8.3617 -0.2520 25 1 1.6334 -8.4959 -0.9008 26 1 0.2367 -9.2591 0.9292 27 1 -0.7583 -8.7359 -1.2195 28 6 1.8675 -2.1701 1.2019 29 1 -0.3633 0.0942 -1.0233 30 1 -0.3632 -0.9335 0.4301 31 1 -0.3633 0.8390 0.5934 32 1 -1.1512 4.3360 -0.5212 33 1 3.6071 2.5960 1.8169 34 1 5.9636 3.1720 2.2241 35 1 7.0423 4.9550 0.9165 36 1 5.7752 6.1644 -0.8109 37 1 3.4204 5.5964 -1.2393 38 1 3.2667 -1.1402 -0.1683 39 1 0.4875 -2.2155 -1.0363 40 1 2.0977 -2.5223 -1.8200 41 1 2.8975 -3.7987 0.1145 42 1 0.0388 -4.0937 0.9096 43 1 -1.7550 -6.9021 1.0574 44 1 2.6547 -2.1991 1.9554 45 1 0.8803 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998879961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 63.305387 kcal Electronic energy + Delta-G solvation = -28914.274267 eV Core-core repulsion = 24900.107050 eV Total energy + Delta-G solvation = -4014.167217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64110 -40.12803 -39.15688 -38.03129 -35.60733 -34.68741 -33.16529 -32.07306 -31.03827 -30.15276 -29.40141 -27.12476 -25.42813 -25.15876 -24.05006 -23.64906 -22.77374 -22.10672 -21.18013 -20.02226 -18.96470 -18.05874 -17.35825 -17.15792 -17.08834 -16.61026 -16.41144 -15.38527 -15.19293 -15.09167 -14.73314 -14.60797 -14.27192 -14.02956 -13.62797 -13.56626 -13.14804 -13.05817 -12.91577 -12.88155 -12.26314 -12.14781 -11.88977 -11.73113 -11.48718 -11.30419 -11.25838 -11.00981 -10.95714 -10.68606 -10.55106 -10.37573 -10.19743 -9.98996 -9.66420 -9.60862 -9.00693 -8.95584 -8.67388 -8.47845 -7.04490 -5.85144 -3.14293 0.34048 1.19812 1.33665 2.15341 2.20567 2.90066 2.96494 3.38882 3.45292 3.47063 3.58451 3.72884 4.28761 4.43778 4.53933 4.81575 4.84569 4.98152 5.00501 5.00988 5.11027 5.14422 5.18175 5.30203 5.34980 5.39115 5.45879 5.49751 5.60991 5.76690 5.79305 5.85800 5.90290 5.91397 6.05750 6.21295 6.26629 6.31093 6.32218 6.37430 6.40452 6.49271 6.67111 6.82233 6.92569 7.17324 7.32743 7.64898 7.90591 8.33148 9.44780 10.00588 10.35110 11.37185 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.002310 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.442226 B =12120.068390 C =13163.886332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.584 5.584 3 C 0.598 3.402 4 O -0.509 6.509 5 C -0.091 4.091 6 O -0.180 6.180 7 C 0.195 3.805 8 N -0.483 5.483 9 C 0.111 3.889 10 C -0.027 4.027 11 C -0.053 4.053 12 C -0.124 4.124 13 C -0.107 4.107 14 C -0.132 4.132 15 C -0.084 4.084 16 C 0.117 3.883 17 C -0.175 4.175 18 C 0.171 3.829 19 N -0.709 5.709 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.162 4.162 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.256 0.744 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 24.713 -1.309 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.315 5.315 3 C 0.385 3.615 4 O -0.387 6.387 5 C -0.146 4.146 6 O -0.066 6.066 7 C -0.031 4.031 8 N -0.211 5.211 9 C -0.012 4.012 10 C -0.027 4.027 11 C -0.072 4.072 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.150 4.150 15 C -0.103 4.103 16 C 0.014 3.986 17 C -0.217 4.217 18 C 0.058 3.942 19 N -0.347 5.347 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.202 4.202 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.272 0.728 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.302 25.073 -1.316 25.887 hybrid contribution -0.781 -1.453 -0.317 1.680 sum 5.521 23.621 -1.634 24.312 Atomic orbital electron populations 1.21932 0.78842 1.03741 1.02401 1.47819 1.07453 1.05538 1.70659 1.16400 0.86197 0.80904 0.78039 1.90914 1.11662 1.85444 1.50671 1.23535 0.80963 0.97167 1.12974 1.84710 1.25051 1.29391 1.67459 1.28286 1.00422 0.76914 0.97484 1.70494 0.98321 1.34226 1.18050 1.20561 0.93989 0.87048 0.99586 1.17605 0.88235 0.98357 0.98545 1.21115 0.94161 0.96426 0.95486 1.21035 0.94667 0.98014 1.00528 1.21254 0.99773 0.95828 0.95659 1.21008 0.94227 1.00750 0.98987 1.21108 0.94843 0.95717 0.98622 1.22750 0.97242 0.79522 0.99090 1.24394 1.01204 0.96499 0.99599 1.21360 0.93865 0.87226 0.91789 1.42358 1.17153 1.05588 1.69577 1.19350 1.01280 0.85453 1.31435 0.90907 1.24771 0.96514 0.98363 1.01209 1.69666 1.07307 1.33637 1.47403 0.86108 0.77321 0.84901 0.77793 1.20467 1.21810 1.21837 1.23942 1.01968 0.97021 0.97279 0.92094 0.89319 0.90989 0.72832 0.85831 0.85674 0.85999 0.85844 0.85904 0.86473 0.89797 0.91924 0.90126 0.78105 0.93470 0.91477 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 8.06 59.85 0.48 1.34 16 2 N -0.58 -8.02 3.08 -174.64 -0.54 -8.56 16 3 C 0.60 8.64 7.41 -12.97 -0.10 8.54 16 4 O -0.51 -8.28 12.81 5.17 0.07 -8.22 16 5 C -0.09 -1.17 6.76 -36.17 -0.24 -1.41 16 6 O -0.18 -1.85 7.73 4.35 0.03 -1.81 16 7 C 0.19 1.56 13.16 52.13 0.69 2.25 16 8 N -0.48 -5.47 11.28 -11.02 -0.12 -5.59 16 9 C 0.11 1.44 6.63 -82.49 -0.55 0.89 16 10 C -0.03 -0.34 5.42 -104.92 -0.57 -0.91 16 11 C -0.05 -0.67 7.59 -39.22 -0.30 -0.97 16 12 C -0.12 -1.34 10.03 -39.64 -0.40 -1.74 16 13 C -0.11 -1.02 10.04 -39.50 -0.40 -1.41 16 14 C -0.13 -1.27 10.03 -39.63 -0.40 -1.67 16 15 C -0.08 -0.96 9.78 -39.22 -0.38 -1.34 16 16 C 0.12 1.73 4.19 -67.12 -0.28 1.44 16 17 C -0.17 -2.87 7.31 -25.82 -0.19 -3.06 16 18 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 19 N -0.71 -16.96 5.41 -52.55 -0.28 -17.24 16 20 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C -0.16 -2.57 7.34 -25.92 -0.19 -2.76 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.09 6.13 -51.93 -0.32 0.77 16 31 H 0.07 0.75 5.96 -51.93 -0.31 0.44 16 32 H 0.26 0.61 8.06 -52.48 -0.42 0.18 16 33 H 0.12 1.63 6.96 -52.49 -0.37 1.26 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.12 1.77 7.25 -51.93 -0.38 1.40 16 39 H 0.08 1.42 6.69 -51.93 -0.35 1.07 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 42 H 0.38 9.72 7.92 -40.82 -0.32 9.40 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.32 6.87 -51.93 -0.36 0.96 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -32.61 374.69 -8.61 -41.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.75 Total: 9.33 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.37 Total: -5.04 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.22 Total: -58.01 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.10 Total: -10.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.61 -8.61 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998879961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.533 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds