Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99771 * 2 1 4 4 O 1.21722 * 119.99737 * 174.80333 * 3 2 1 5 5 C 1.46402 * 119.99824 * 355.07873 * 3 2 1 6 6 O 1.35372 * 126.81997 * 353.74918 * 5 3 2 7 7 C 1.33660 * 107.95226 * 179.97438 * 6 5 3 8 8 N 1.30349 * 109.73038 * 359.97438 * 7 6 5 9 9 C 1.34552 * 109.01460 * 359.76508 * 8 7 6 10 10 C 1.48135 * 126.53043 * 180.23558 * 9 8 7 11 11 C 1.39471 * 120.13315 * 135.20219 * 10 9 8 12 12 C 1.37983 * 119.86050 * 179.76816 * 11 10 9 13 13 C 1.38341 * 120.13356 * 0.50391 * 12 11 10 14 14 C 1.38349 * 120.27393 * 359.74742 * 13 12 11 15 15 C 1.37980 * 120.13064 * 0.02562 * 14 13 12 16 16 C 1.46501 * 120.00359 * 179.97438 * 2 1 3 17 17 C 1.53785 * 113.61269 * 39.13861 * 16 2 1 18 18 C 1.53959 * 87.01787 * 220.04725 * 17 16 2 19 19 N 1.46497 * 113.74177 * 139.94235 * 18 17 16 20 20 C 1.36938 * 120.00228 * 107.40414 * 19 18 17 21 21 H 1.07998 * 119.99594 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00284 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00204 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47211 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47449 * 119.99873 * 24 22 20 27 27 H 1.48505 * 109.47174 * 239.99945 * 24 22 20 28 28 C 1.53776 * 113.61449 * 301.53079 * 16 2 1 29 29 H 1.08997 * 109.46967 * 84.73978 * 1 2 3 30 30 H 1.09006 * 109.46383 * 204.73702 * 1 2 3 31 31 H 1.08997 * 109.47077 * 324.73260 * 1 2 3 32 32 H 1.08003 * 125.13201 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.06932 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.93196 * 180.25370 * 12 11 10 35 35 H 1.08007 * 119.86398 * 179.76842 * 13 12 11 36 36 H 1.07998 * 119.93014 * 180.02562 * 14 13 12 37 37 H 1.08004 * 120.06552 * 180.02562 * 15 14 13 38 38 H 1.08997 * 112.85068 * 170.32691 * 16 2 1 39 39 H 1.09002 * 113.60920 * 334.56639 * 17 16 2 40 40 H 1.08995 * 113.61732 * 105.47077 * 17 16 2 41 41 H 1.08997 * 113.53463 * 270.81230 * 18 17 16 42 42 H 0.97006 * 120.00136 * 287.40388 * 19 18 17 43 43 H 0.96996 * 119.99970 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.61515 * 254.52828 * 28 16 2 45 45 H 1.09004 * 113.61615 * 25.42782 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3523 1.1694 0.0955 5 6 1.4108 2.4328 -0.1088 6 8 0.0850 2.5893 -0.3328 7 6 -0.1762 3.8998 -0.3609 8 7 0.9233 4.5719 -0.1645 9 6 1.9410 3.7081 0.0038 10 6 3.3588 4.0544 0.2573 11 6 4.0807 3.3757 1.2389 12 6 5.4024 3.6997 1.4671 13 6 6.0086 4.7024 0.7317 14 6 5.2963 5.3828 -0.2398 15 6 3.9754 5.0648 -0.4804 16 6 2.1976 -1.2687 0.0006 17 6 1.5592 -2.3491 -0.8884 18 6 1.9076 -3.3556 0.2233 19 7 0.8616 -4.3522 0.4656 20 6 1.0453 -5.6489 0.0654 21 1 1.9612 -5.9367 -0.4292 22 6 0.0540 -6.5931 0.2946 23 7 -1.0625 -6.2422 0.8970 24 14 0.3043 -8.3617 -0.2520 25 1 1.6334 -8.4959 -0.9008 26 1 0.2367 -9.2591 0.9292 27 1 -0.7583 -8.7359 -1.2195 28 6 1.8675 -2.1701 1.2019 29 1 -0.3633 0.0942 -1.0233 30 1 -0.3632 -0.9335 0.4301 31 1 -0.3633 0.8390 0.5934 32 1 -1.1512 4.3360 -0.5212 33 1 3.6071 2.5960 1.8169 34 1 5.9636 3.1720 2.2241 35 1 7.0423 4.9550 0.9165 36 1 5.7752 6.1644 -0.8109 37 1 3.4204 5.5964 -1.2393 38 1 3.2667 -1.1402 -0.1683 39 1 0.4875 -2.2155 -1.0363 40 1 2.0977 -2.5223 -1.8200 41 1 2.8975 -3.7987 0.1145 42 1 0.0388 -4.0937 0.9096 43 1 -1.7550 -6.9021 1.0574 44 1 2.6547 -2.1991 1.9554 45 1 0.8803 -1.9875 1.6266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998879961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 41.666565 kcal Electronic energy + Delta-G solvation = -28915.212597 eV Core-core repulsion = 24900.107050 eV Total energy + Delta-G solvation = -4015.105547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.44729 -41.30602 -39.99813 -39.29897 -36.59550 -35.92552 -34.85504 -32.92935 -31.95619 -31.84407 -30.34711 -28.17386 -26.80262 -26.47616 -25.54864 -24.43271 -23.91010 -23.05566 -22.14945 -21.10833 -20.34394 -19.06316 -18.94205 -18.34643 -17.97525 -17.72362 -17.24156 -16.51604 -16.30270 -16.16031 -16.01496 -15.82402 -15.46254 -15.16194 -14.91847 -14.47658 -14.43190 -14.33347 -14.09522 -13.71818 -13.53985 -13.29257 -13.21249 -13.14517 -12.82754 -12.56666 -12.28493 -12.21275 -12.13143 -12.06442 -12.01280 -11.82938 -11.73522 -11.50996 -11.24117 -10.89044 -10.48510 -9.85436 -9.73079 -9.39170 -8.99674 -7.95186 -5.23313 -0.54946 0.40705 0.51703 1.29475 1.38844 1.48447 1.49118 1.58764 1.87854 1.96343 2.56876 2.83374 2.97456 3.36621 3.39173 3.60962 3.72435 3.75555 3.91514 4.04674 4.05650 4.12206 4.21955 4.25372 4.26540 4.31983 4.34731 4.53596 4.58556 4.66446 4.70287 4.76919 4.85519 4.88235 4.93407 5.04721 5.11755 5.12158 5.15056 5.35470 5.49475 5.52352 5.56150 5.59108 5.59515 6.04311 6.14495 6.27184 6.43290 6.82598 7.33960 8.08477 8.32205 9.28017 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.002310 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.442226 B =12120.068390 C =13163.886332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.587 5.587 3 C 0.597 3.403 4 O -0.535 6.535 5 C -0.117 4.117 6 O -0.180 6.180 7 C 0.226 3.774 8 N -0.513 5.513 9 C 0.109 3.891 10 C -0.052 4.052 11 C -0.072 4.072 12 C -0.134 4.134 13 C -0.105 4.105 14 C -0.130 4.130 15 C -0.096 4.096 16 C 0.134 3.866 17 C -0.162 4.162 18 C 0.155 3.845 19 N -0.722 5.722 20 C -0.241 4.241 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.295 1.295 27 H -0.294 1.294 28 C -0.149 4.149 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.311 0.689 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 26.527 -2.116 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.316 5.316 3 C 0.385 3.615 4 O -0.414 6.414 5 C -0.172 4.172 6 O -0.067 6.067 7 C 0.002 3.998 8 N -0.240 5.240 9 C -0.013 4.013 10 C -0.053 4.053 11 C -0.091 4.091 12 C -0.152 4.152 13 C -0.123 4.123 14 C -0.148 4.148 15 C -0.114 4.114 16 C 0.030 3.970 17 C -0.204 4.204 18 C 0.044 3.956 19 N -0.359 5.359 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.189 4.189 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.325 0.675 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.871 26.930 -2.140 27.875 hybrid contribution -0.924 -1.832 -0.075 2.053 sum 5.947 25.098 -2.215 25.888 Atomic orbital electron populations 1.22010 0.77564 1.03914 1.03194 1.47795 1.08182 1.04931 1.70725 1.16557 0.86061 0.81448 0.77392 1.90888 1.12790 1.85984 1.51752 1.23084 0.82039 0.96349 1.15749 1.84698 1.23722 1.30532 1.67726 1.29574 1.01389 0.75814 0.93064 1.70532 0.98920 1.34568 1.19992 1.20756 0.94496 0.87432 0.98664 1.17861 0.88746 0.99324 0.99348 1.21110 0.95185 0.96699 0.96112 1.21312 0.94143 0.98589 1.01145 1.21629 1.01107 0.94795 0.94770 1.21391 0.93582 1.00976 0.98832 1.21299 0.95809 0.95560 0.98757 1.22422 0.97169 0.79889 0.97507 1.24160 1.01157 0.95929 0.99109 1.21642 0.92610 0.87235 0.94105 1.42493 1.17938 1.05707 1.69802 1.19716 1.00963 0.86731 1.29923 0.90487 1.25525 0.96655 1.02110 1.02395 1.69805 1.08147 1.34494 1.49396 0.85121 0.77513 0.80405 0.77007 1.19099 1.22217 1.22171 1.23783 1.02210 0.95589 0.97348 0.91202 0.90131 0.89559 0.67480 0.87467 0.84269 0.82979 0.82961 0.85379 0.86562 0.90170 0.91491 0.90132 0.79236 0.94041 0.90810 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 8.06 127.77 1.03 2.72 16 2 N -0.59 -15.85 3.08 -824.65 -2.54 -18.40 16 3 C 0.60 17.31 7.41 86.37 0.64 17.95 16 4 O -0.53 -17.76 12.81 -4.42 -0.06 -17.81 16 5 C -0.12 -2.95 6.76 24.48 0.17 -2.78 16 6 O -0.18 -3.36 7.73 -7.35 -0.06 -3.42 16 7 C 0.23 3.00 13.16 130.46 1.72 4.72 16 8 N -0.51 -10.85 11.28 -303.70 -3.43 -14.28 16 9 C 0.11 2.80 6.63 41.44 0.27 3.08 16 10 C -0.05 -1.35 5.42 -20.05 -0.11 -1.46 16 11 C -0.07 -1.87 7.59 22.51 0.17 -1.70 16 12 C -0.13 -2.81 10.03 22.23 0.22 -2.59 16 13 C -0.11 -1.80 10.04 22.32 0.22 -1.57 16 14 C -0.13 -2.26 10.03 22.23 0.22 -2.04 16 15 C -0.10 -2.10 9.78 22.51 0.22 -1.88 16 16 C 0.13 3.90 4.19 45.52 0.19 4.09 16 17 C -0.16 -5.24 7.31 31.18 0.23 -5.01 16 18 C 0.15 5.80 4.48 45.58 0.20 6.00 16 19 N -0.72 -34.86 5.41 -320.17 -1.73 -36.59 16 20 C -0.24 -13.01 9.97 84.03 0.84 -12.17 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 23 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 24 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 C -0.15 -4.71 7.34 31.12 0.23 -4.49 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.95 6.13 -2.38 -0.01 1.93 16 31 H 0.09 1.68 5.96 -2.39 -0.01 1.67 16 32 H 0.31 -0.01 8.06 -2.91 -0.02 -0.04 16 33 H 0.11 3.02 6.96 -2.91 -0.02 3.00 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.12 3.49 7.25 -2.39 -0.02 3.47 16 39 H 0.08 2.68 6.69 -2.39 -0.02 2.66 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 42 H 0.38 19.33 7.92 -92.70 -0.73 18.60 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.08 2.60 6.87 -2.38 -0.02 2.58 16 Total: -1.00 -71.95 374.69 1.73 -70.22 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.30 Total: 31.22 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 6.93 Total: -0.85 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -7.42 Total: -126.72 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.11 Total: -21.23 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.95 1.73 -70.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998879961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.885 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds