Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34775 * 119.99908 * 2 1 4 4 O 1.21695 * 120.00017 * 183.35450 * 3 2 1 5 5 C 1.46671 * 119.99680 * 3.34779 * 3 2 1 6 6 C 1.36721 * 125.85632 * 173.24811 * 5 3 2 7 7 C 1.39910 * 106.91724 * 179.81853 * 6 5 3 8 8 C 1.36515 * 107.02120 * 0.34967 * 7 6 5 9 9 C 1.47737 * 125.77100 * 179.90861 * 8 7 6 10 10 C 1.40033 * 120.93026 * 359.43837 * 9 8 7 11 11 C 1.37951 * 118.98670 * 179.73323 * 10 9 8 12 12 N 1.31939 * 120.90378 * 0.55437 * 11 10 9 13 13 C 1.31925 * 122.07454 * 359.71710 * 12 11 10 14 14 C 1.37946 * 120.91330 * 0.02562 * 13 12 11 15 15 O 1.34398 * 108.46558 * 359.64407 * 8 7 6 16 16 C 1.46501 * 120.00037 * 179.97438 * 2 1 3 17 17 C 1.53780 * 113.61261 * 39.13974 * 16 2 1 18 18 C 1.53955 * 87.01851 * 220.04418 * 17 16 2 19 19 N 1.46504 * 113.74373 * 139.93778 * 18 17 16 20 20 C 1.36941 * 119.99525 * 107.40400 * 19 18 17 21 21 H 1.07999 * 119.99831 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46889 * 90.00468 * 24 22 20 26 26 H 1.48501 * 109.47101 * 210.00043 * 24 22 20 27 27 H 1.48497 * 109.47339 * 330.00066 * 24 22 20 28 28 C 1.53776 * 113.61582 * 301.52991 * 16 2 1 29 29 H 1.09001 * 109.47107 * 84.02948 * 1 2 3 30 30 H 1.09001 * 109.46836 * 204.02687 * 1 2 3 31 31 H 1.08996 * 109.47376 * 324.02654 * 1 2 3 32 32 H 1.08004 * 126.54112 * 0.05312 * 6 5 3 33 33 H 1.08002 * 126.49549 * 180.24442 * 7 6 5 34 34 H 1.07999 * 120.50665 * 359.97438 * 10 9 8 35 35 H 1.07990 * 119.54803 * 180.29472 * 11 10 9 36 36 H 1.08005 * 119.54276 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.50907 * 179.97438 * 14 13 12 38 38 H 1.08997 * 112.84742 * 170.32868 * 16 2 1 39 39 H 1.08998 * 113.61684 * 334.56198 * 17 16 2 40 40 H 1.08999 * 113.61522 * 105.46868 * 17 16 2 41 41 H 1.08999 * 113.54234 * 270.81419 * 18 17 16 42 42 H 0.96990 * 120.00164 * 287.41097 * 19 18 17 43 43 H 0.97002 * 119.99906 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.61182 * 254.53162 * 28 16 2 45 45 H 1.08999 * 113.61353 * 25.43468 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3543 1.1681 -0.0617 5 6 1.4074 2.4363 0.0742 6 6 1.9666 3.6762 0.2126 7 6 0.9139 4.5974 0.2352 8 6 -0.2440 3.8840 0.1178 9 6 -1.6086 4.4498 0.0973 10 6 -1.8176 5.8295 0.2142 11 6 -3.1085 6.3149 0.1845 12 7 -4.1370 5.4980 0.0592 13 6 -3.9852 4.1920 -0.0483 14 6 -2.7297 3.6208 -0.0333 15 8 0.0674 2.5804 0.0183 16 6 2.1976 -1.2687 0.0006 17 6 1.5591 -2.3490 -0.8884 18 6 1.9076 -3.3556 0.2232 19 7 0.8614 -4.3522 0.4656 20 6 1.0452 -5.6489 0.0654 21 1 1.9614 -5.9368 -0.4286 22 6 0.0543 -6.5933 0.2955 23 7 -1.0621 -6.2425 0.8980 24 14 0.3047 -8.3619 -0.2512 25 1 0.9466 -9.1323 0.8441 26 1 -1.0101 -8.9695 -0.5791 27 1 1.1764 -8.3899 -1.4530 28 6 1.8675 -2.1701 1.2019 29 1 -0.3633 0.1069 -1.0221 30 1 -0.3633 -0.9386 0.4184 31 1 -0.3634 0.8316 0.6036 32 1 3.0203 3.9017 0.2863 33 1 1.0007 5.6698 0.3295 34 1 -0.9807 6.5035 0.3220 35 1 -3.2799 7.3778 0.2691 36 1 -4.8561 3.5612 -0.1494 37 1 -2.6130 2.5508 -0.1213 38 1 3.2667 -1.1402 -0.1682 39 1 0.4875 -2.2155 -1.0363 40 1 2.0977 -2.5222 -1.8200 41 1 2.8974 -3.7988 0.1146 42 1 0.0388 -4.0936 0.9095 43 1 -1.7544 -6.9025 1.0591 44 1 2.6547 -2.1991 1.9553 45 1 0.8803 -1.9876 1.6265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998900333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 64.363667 kcal Electronic energy + Delta-G solvation = -28330.422913 eV Core-core repulsion = 24316.301587 eV Total energy + Delta-G solvation = -4014.121326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.11912 -40.43126 -40.01461 -38.05846 -35.06539 -34.12720 -33.27885 -33.11030 -31.69717 -30.20102 -29.39469 -27.13182 -25.54851 -25.17375 -24.31372 -24.07484 -22.92433 -21.73994 -21.39291 -20.10576 -18.97392 -18.27561 -17.41211 -17.15278 -16.87829 -16.61940 -16.48431 -16.20367 -15.18093 -15.12205 -14.65508 -14.58878 -14.28790 -14.22486 -14.07260 -13.62189 -13.52573 -13.22376 -13.11454 -13.04099 -12.83833 -12.16861 -12.14228 -11.97244 -11.84059 -11.29501 -11.03573 -10.94280 -10.69304 -10.54294 -10.37876 -10.33270 -10.20984 -10.01569 -9.98188 -9.67934 -9.63948 -8.94550 -8.76390 -8.47307 -7.04019 -5.84489 -3.13651 -0.00460 0.64657 1.15148 2.10512 2.12018 2.89803 2.98938 3.38901 3.39773 3.45491 3.46726 3.85849 3.99422 4.22009 4.43542 4.46599 4.50153 4.54465 4.64145 5.01172 5.03750 5.05839 5.10341 5.13800 5.23250 5.29060 5.31978 5.34201 5.39597 5.49182 5.57050 5.61704 5.79611 5.81482 5.88747 5.95223 6.06343 6.14014 6.21923 6.25821 6.28919 6.49582 6.51546 6.67959 6.95609 7.30561 7.48546 7.64930 7.91172 8.33829 9.45362 10.01166 10.35806 11.37795 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.002245 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.272147 B =12466.415901 C =14222.014313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.584 5.584 3 C 0.594 3.406 4 O -0.523 6.523 5 C -0.049 4.049 6 C -0.126 4.126 7 C -0.183 4.183 8 C 0.033 3.967 9 C 0.027 3.973 10 C -0.152 4.152 11 C 0.104 3.896 12 N -0.483 5.483 13 C 0.107 3.893 14 C -0.154 4.154 15 O -0.146 6.146 16 C 0.114 3.886 17 C -0.174 4.174 18 C 0.171 3.829 19 N -0.709 5.709 20 C -0.245 4.245 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.162 4.162 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.066 0.934 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 26.753 -1.157 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.314 5.314 3 C 0.382 3.618 4 O -0.402 6.402 5 C -0.102 4.102 6 C -0.147 4.147 7 C -0.202 4.202 8 C -0.019 4.019 9 C 0.019 3.981 10 C -0.172 4.172 11 C -0.052 4.052 12 N -0.192 5.192 13 C -0.050 4.050 14 C -0.174 4.174 15 O -0.041 6.041 16 C 0.012 3.988 17 C -0.216 4.216 18 C 0.058 3.942 19 N -0.347 5.347 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.203 4.203 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.486 26.593 -1.297 26.666 hybrid contribution 0.636 -1.076 -0.123 1.256 sum -0.850 25.517 -1.421 25.571 Atomic orbital electron populations 1.22035 0.78870 1.03932 1.02442 1.47821 1.07474 1.05663 1.70447 1.16708 0.86219 0.81263 0.77646 1.90869 1.11907 1.85923 1.51452 1.22380 0.79862 0.96741 1.11200 1.21873 1.01281 0.90206 1.01301 1.21776 0.90540 1.01065 1.06851 1.20604 0.93784 0.81654 1.05833 1.18080 0.88490 0.93270 0.98245 1.22108 0.99558 0.93848 1.01700 1.22723 0.87450 1.00181 0.94845 1.67668 1.35282 1.05020 1.11261 1.22791 0.96698 0.91126 0.94336 1.22384 0.92819 1.01737 1.00476 1.84363 1.23881 1.25736 1.70169 1.22766 0.97348 0.79616 0.99113 1.24382 1.01184 0.96473 0.99602 1.21362 0.93879 0.87220 0.91783 1.42347 1.17142 1.05570 1.69600 1.19310 1.01282 0.85458 1.31564 0.90950 1.24771 0.96508 0.98353 1.01196 1.69656 1.07306 1.33714 1.47356 0.86174 0.76828 0.84869 0.78223 1.21645 1.21748 1.20678 1.23951 1.01990 0.97049 0.97272 0.92112 0.89316 0.90414 0.81724 0.82257 0.84050 0.82041 0.81959 0.83828 0.86436 0.89796 0.91894 0.90109 0.78104 0.93415 0.91482 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.34 59.85 0.50 1.33 16 2 N -0.58 -8.17 3.08 -174.54 -0.54 -8.71 16 3 C 0.59 8.67 7.64 -12.86 -0.10 8.58 16 4 O -0.52 -8.91 16.34 5.19 0.08 -8.83 16 5 C -0.05 -0.60 6.77 -36.73 -0.25 -0.85 16 6 C -0.13 -1.31 10.60 -39.50 -0.42 -1.72 16 7 C -0.18 -1.54 10.26 -39.58 -0.41 -1.95 16 8 C 0.03 0.31 7.05 -36.32 -0.26 0.06 16 9 C 0.03 0.23 5.91 -104.67 -0.62 -0.39 16 10 C -0.15 -0.98 9.64 -39.01 -0.38 -1.35 16 11 C 0.10 0.70 11.17 -17.61 -0.20 0.50 16 12 N -0.48 -4.22 10.34 -13.35 -0.14 -4.36 16 13 C 0.11 0.83 11.17 -17.62 -0.20 0.63 16 14 C -0.15 -1.23 9.82 -39.02 -0.38 -1.61 16 15 O -0.15 -1.60 7.11 3.82 0.03 -1.58 16 16 C 0.11 1.72 4.22 -67.12 -0.28 1.44 16 17 C -0.17 -2.89 7.31 -25.83 -0.19 -3.08 16 18 C 0.17 3.23 4.48 -67.02 -0.30 2.93 16 19 N -0.71 -17.03 5.41 -52.54 -0.28 -17.32 16 20 C -0.25 -6.61 9.97 -15.06 -0.15 -6.76 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.16 -2.62 7.34 -25.92 -0.19 -2.81 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.11 6.11 -51.93 -0.32 0.79 16 31 H 0.08 0.84 5.39 -51.93 -0.28 0.56 16 32 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.16 0.84 7.33 -52.49 -0.38 0.45 16 34 H 0.14 0.54 7.11 -52.49 -0.37 0.17 16 35 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.14 1.01 7.99 -52.49 -0.42 0.59 16 38 H 0.12 1.82 7.20 -51.93 -0.37 1.45 16 39 H 0.08 1.43 6.68 -51.93 -0.35 1.08 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 42 H 0.38 9.76 7.92 -40.82 -0.32 9.43 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.34 6.88 -51.93 -0.36 0.98 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -32.56 378.86 -9.03 -41.59 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.68 Total: 8.74 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.91 Total: -5.49 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.24 Total: -57.07 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.11 Total: -10.40 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.56 -9.03 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998900333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.954 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds