Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99853 * 2 1 4 4 O 1.21493 * 120.00055 * 185.29390 * 3 2 1 5 5 C 1.48289 * 120.00012 * 5.28666 * 3 2 1 6 6 C 1.35674 * 118.87281 * 201.21530 * 5 3 2 7 7 C 1.42056 * 119.93564 * 179.97438 * 6 5 3 8 8 O 1.21928 * 121.06629 * 180.02562 * 7 6 5 9 9 C 1.47210 * 117.86342 * 0.02562 * 7 6 5 10 10 C 1.39582 * 121.35768 * 180.02562 * 9 7 6 11 11 C 1.36647 * 119.69268 * 179.97438 * 10 9 7 12 12 C 1.38877 * 120.56105 * 0.02562 * 11 10 9 13 13 C 1.37720 * 120.71959 * 359.97322 * 12 11 10 14 14 C 1.39288 * 119.71689 * 0.02607 * 13 12 11 15 15 N 1.36462 * 118.86767 * 20.95123 * 5 3 2 16 16 H 0.96997 * 119.18440 * 359.97438 * 15 5 3 17 17 C 1.46498 * 120.00352 * 179.97438 * 2 1 3 18 18 C 1.53783 * 113.69108 * 18.49374 * 17 2 1 19 19 C 1.53784 * 87.08160 * 89.12501 * 18 17 2 20 20 N 1.46501 * 113.61443 * 270.88929 * 19 18 17 21 21 C 1.36938 * 119.99423 * 257.24559 * 20 19 18 22 22 H 1.07996 * 120.00610 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99449 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00087 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99463 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47457 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.46989 * 119.99865 * 25 23 21 28 28 H 1.48501 * 109.46769 * 239.99618 * 25 23 21 29 29 C 1.53784 * 113.61370 * 116.03143 * 17 2 1 30 30 H 1.09007 * 109.47472 * 264.18946 * 1 2 3 31 31 H 1.08994 * 109.47347 * 24.19081 * 1 2 3 32 32 H 1.09007 * 109.46696 * 144.19463 * 1 2 3 33 33 H 1.08002 * 120.03198 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.15448 * 359.95693 * 10 9 7 35 35 H 1.08005 * 119.71879 * 180.02562 * 11 10 9 36 36 H 1.07998 * 119.64469 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.14093 * 180.02562 * 13 12 11 38 38 H 1.09001 * 112.85424 * 247.22395 * 17 2 1 39 39 H 1.08998 * 113.61523 * 203.67479 * 18 17 2 40 40 H 1.09005 * 113.61211 * 334.57798 * 18 17 2 41 41 H 1.08996 * 113.69259 * 139.99288 * 19 18 17 42 42 H 0.96996 * 120.00089 * 77.25279 * 20 19 18 43 43 H 0.97008 * 119.99755 * 180.02562 * 24 23 21 44 44 H 1.08997 * 113.61664 * 25.34700 * 29 17 2 45 45 H 1.08998 * 113.61550 * 156.25410 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3498 1.1695 -0.0971 5 6 1.4020 2.4487 0.1183 6 6 1.9994 3.5896 -0.3085 7 6 1.3140 4.8297 -0.2063 8 8 1.8310 5.8674 -0.5839 9 6 -0.0405 4.8217 0.3701 10 6 -0.7798 5.9980 0.5043 11 6 -2.0344 5.9512 1.0437 12 6 -2.5796 4.7435 1.4597 13 6 -1.8680 3.5709 1.3367 14 6 -0.5872 3.5946 0.7897 15 7 0.1444 2.4391 0.6478 16 1 -0.2415 1.5968 0.9350 17 6 2.1975 -1.2687 0.0006 18 6 1.3500 -2.4718 -0.4456 19 6 1.7965 -2.1535 -1.8823 20 7 0.9150 -1.2107 -2.5755 21 6 0.0196 -1.6677 -3.5054 22 1 -0.0365 -2.7230 -3.7280 23 6 -0.8152 -0.7744 -4.1626 24 7 -0.7464 0.5118 -3.8917 25 14 -2.0371 -1.3979 -5.4305 26 1 -1.9170 -2.8731 -5.5502 27 1 -3.4154 -1.0460 -5.0045 28 1 -1.7499 -0.7701 -6.7453 29 6 3.0411 -1.4935 -1.2655 30 1 -0.3634 -0.1040 1.0224 31 1 -0.3634 0.9374 -0.4211 32 1 -0.3633 -0.8335 -0.6013 33 1 2.9950 3.5551 -0.7256 34 1 -0.3620 6.9409 0.1836 35 1 -2.6070 6.8611 1.1473 36 1 -3.5724 4.7237 1.8844 37 1 -2.3011 2.6369 1.6629 38 1 2.7459 -1.4404 0.9268 39 1 1.7198 -3.4278 -0.0751 40 1 0.2808 -2.3378 -0.2808 41 1 2.0213 -3.0386 -2.4774 42 1 0.9658 -0.2629 -2.3759 43 1 -1.3301 1.1360 -4.3507 44 1 3.3371 -0.5698 -1.7626 45 1 3.8732 -2.1821 -1.1191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999075125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 56.085227 kcal Electronic energy + Delta-G solvation = -30423.788056 eV Core-core repulsion = 26409.307750 eV Total energy + Delta-G solvation = -4014.480306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57127 -40.17281 -38.21652 -38.00047 -37.02858 -34.52639 -33.29367 -32.12499 -30.86902 -30.17313 -29.75008 -27.37760 -25.72501 -25.07442 -24.08435 -23.71812 -22.71334 -22.20870 -20.55621 -18.70123 -18.39290 -18.31546 -17.60297 -17.26154 -16.41019 -16.13909 -15.85845 -15.41268 -14.98031 -14.89700 -14.67195 -14.20671 -14.17111 -14.04741 -13.78247 -13.34273 -13.31167 -13.25603 -13.10397 -12.92019 -12.35178 -12.12775 -11.99620 -11.87972 -11.48844 -11.47138 -11.20180 -10.98379 -10.90444 -10.38096 -10.31298 -10.12061 -9.82501 -9.69922 -9.46112 -9.42318 -9.12524 -9.02550 -8.50912 -7.75259 -7.13415 -5.92852 -3.23178 0.49661 0.86632 1.50296 2.63248 2.69920 2.94598 3.24024 3.32587 3.39823 3.41953 3.97659 4.11542 4.40399 4.45159 4.55000 4.74610 4.84520 5.00682 5.03793 5.06562 5.16497 5.18951 5.24032 5.33489 5.33808 5.45768 5.69209 5.72019 5.74305 5.78297 5.81970 6.02640 6.06039 6.08163 6.13544 6.25938 6.37180 6.40337 6.44424 6.54467 6.58791 6.70096 6.79967 6.91310 6.95243 7.31975 7.59022 7.91772 8.02830 8.25422 9.37198 9.92638 10.28177 11.28456 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.004320 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.613729 B = 6479.758350 C = 7882.203516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.577 5.577 3 C 0.555 3.445 4 O -0.506 6.506 5 C 0.168 3.832 6 C -0.239 4.239 7 C 0.421 3.579 8 O -0.491 6.491 9 C -0.202 4.202 10 C -0.027 4.027 11 C -0.166 4.166 12 C -0.054 4.054 13 C -0.174 4.174 14 C 0.203 3.797 15 N -0.609 5.609 16 H 0.425 0.575 17 C 0.125 3.875 18 C -0.182 4.182 19 C 0.164 3.836 20 N -0.705 5.705 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.927 5.927 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.162 4.162 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 2.173 14.837 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.309 5.309 3 C 0.340 3.660 4 O -0.381 6.381 5 C 0.057 3.943 6 C -0.267 4.267 7 C 0.309 3.691 8 O -0.373 6.373 9 C -0.206 4.206 10 C -0.045 4.045 11 C -0.185 4.185 12 C -0.073 4.073 13 C -0.195 4.195 14 C 0.099 3.901 15 N -0.231 5.231 16 H 0.273 0.727 17 C 0.022 3.978 18 C -0.223 4.223 19 C 0.051 3.949 20 N -0.345 5.345 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.575 5.575 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.201 4.201 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.179 0.821 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.097 2.588 14.417 14.797 hybrid contribution -1.053 -0.463 -0.573 1.285 sum -3.150 2.125 13.845 14.357 Atomic orbital electron populations 1.22660 0.79446 1.07907 1.01007 1.47420 1.07035 1.05087 1.71355 1.18107 0.87188 0.82494 0.78203 1.90807 1.12617 1.86110 1.48527 1.20059 0.84247 0.95596 0.94389 1.22363 1.03882 0.91387 1.09027 1.18458 0.85345 0.88715 0.76628 1.90688 1.68760 1.34682 1.43210 1.20354 0.98745 0.92837 1.08676 1.20847 0.93133 0.97334 0.93210 1.20833 0.96277 0.98321 1.03076 1.21093 0.99038 0.91690 0.95497 1.20675 0.92959 0.99907 1.05984 1.17973 0.91611 0.85608 0.94925 1.42663 1.13395 1.10290 1.56789 0.72709 1.21900 0.94753 0.82839 0.98272 1.24252 1.00414 0.95546 1.02114 1.21188 0.89639 0.93561 0.90502 1.42319 1.41139 1.05655 1.45402 1.19318 1.11419 0.92968 1.14189 0.90899 1.24751 1.00176 0.95319 1.00194 1.69656 1.41608 1.00851 1.45346 0.86135 0.80863 0.77835 0.81415 1.20533 1.21852 1.21801 1.23731 0.97898 1.02151 0.96356 0.92959 0.88828 0.86040 0.82140 0.84528 0.85404 0.85131 0.84889 0.90446 0.89709 0.90288 0.91845 0.77901 0.93365 0.90424 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 7.07 59.84 0.42 0.87 16 2 N -0.58 -8.85 2.11 -173.95 -0.37 -9.22 16 3 C 0.55 9.43 7.33 -12.13 -0.09 9.34 16 4 O -0.51 -9.75 15.17 5.37 0.08 -9.67 16 5 C 0.17 2.68 6.26 -82.59 -0.52 2.16 16 6 C -0.24 -4.15 9.47 -39.04 -0.37 -4.52 16 7 C 0.42 7.46 6.97 -34.48 -0.24 7.22 16 8 O -0.49 -9.79 17.34 4.98 0.09 -9.70 16 9 C -0.20 -3.05 5.89 -104.81 -0.62 -3.66 16 10 C -0.03 -0.34 9.61 -39.66 -0.38 -0.72 16 11 C -0.17 -1.67 9.97 -39.92 -0.40 -2.07 16 12 C -0.05 -0.50 10.01 -39.53 -0.40 -0.90 16 13 C -0.17 -1.81 9.91 -39.38 -0.39 -2.20 16 14 C 0.20 2.69 6.66 -83.99 -0.56 2.13 16 15 N -0.61 -8.06 3.98 -7.43 -0.03 -8.09 16 16 H 0.42 4.69 4.32 -40.82 -0.18 4.52 16 17 C 0.13 1.85 4.16 -67.12 -0.28 1.57 16 18 C -0.18 -2.62 7.16 -25.92 -0.19 -2.81 16 19 C 0.16 2.97 4.55 -67.11 -0.31 2.67 16 20 N -0.71 -16.01 3.82 -52.63 -0.20 -16.21 16 21 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16 25 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 C -0.16 -2.68 7.10 -25.91 -0.18 -2.86 16 30 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 31 H 0.09 1.42 5.26 -51.93 -0.27 1.15 16 32 H 0.12 2.01 4.70 -51.92 -0.24 1.76 16 33 H 0.16 2.84 7.64 -52.49 -0.40 2.44 16 34 H 0.14 1.68 7.78 -52.49 -0.41 1.27 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.18 5.79 -51.93 -0.30 0.88 16 41 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 42 H 0.39 9.37 6.14 -40.82 -0.25 9.12 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.08 1.53 7.08 -51.93 -0.37 1.16 16 45 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -31.85 362.92 -9.30 -41.16 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -5.31 Total: 15.85 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -4.74 Total: -0.54 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.13 Total: -58.69 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.85 -9.30 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999075125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.240 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds