Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99853 * 2 1 4 4 O 1.21493 * 120.00055 * 185.29390 * 3 2 1 5 5 C 1.48289 * 120.00012 * 5.28666 * 3 2 1 6 6 C 1.35674 * 118.87281 * 201.21530 * 5 3 2 7 7 C 1.42056 * 119.93564 * 179.97438 * 6 5 3 8 8 O 1.21928 * 121.06629 * 180.02562 * 7 6 5 9 9 C 1.47210 * 117.86342 * 0.02562 * 7 6 5 10 10 C 1.39582 * 121.35768 * 180.02562 * 9 7 6 11 11 C 1.36647 * 119.69268 * 179.97438 * 10 9 7 12 12 C 1.38877 * 120.56105 * 0.02562 * 11 10 9 13 13 C 1.37720 * 120.71959 * 359.97322 * 12 11 10 14 14 C 1.39288 * 119.71689 * 0.02607 * 13 12 11 15 15 N 1.36462 * 118.86767 * 20.95123 * 5 3 2 16 16 H 0.96997 * 119.18440 * 359.97438 * 15 5 3 17 17 C 1.46498 * 120.00352 * 179.97438 * 2 1 3 18 18 C 1.53783 * 113.69108 * 18.49374 * 17 2 1 19 19 C 1.53784 * 87.08160 * 89.12501 * 18 17 2 20 20 N 1.46501 * 113.61443 * 270.88929 * 19 18 17 21 21 C 1.36938 * 119.99423 * 257.24559 * 20 19 18 22 22 H 1.07996 * 120.00610 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99449 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00087 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99463 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47457 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.46989 * 119.99865 * 25 23 21 28 28 H 1.48501 * 109.46769 * 239.99618 * 25 23 21 29 29 C 1.53784 * 113.61370 * 116.03143 * 17 2 1 30 30 H 1.09007 * 109.47472 * 264.18946 * 1 2 3 31 31 H 1.08994 * 109.47347 * 24.19081 * 1 2 3 32 32 H 1.09007 * 109.46696 * 144.19463 * 1 2 3 33 33 H 1.08002 * 120.03198 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.15448 * 359.95693 * 10 9 7 35 35 H 1.08005 * 119.71879 * 180.02562 * 11 10 9 36 36 H 1.07998 * 119.64469 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.14093 * 180.02562 * 13 12 11 38 38 H 1.09001 * 112.85424 * 247.22395 * 17 2 1 39 39 H 1.08998 * 113.61523 * 203.67479 * 18 17 2 40 40 H 1.09005 * 113.61211 * 334.57798 * 18 17 2 41 41 H 1.08996 * 113.69259 * 139.99288 * 19 18 17 42 42 H 0.96996 * 120.00089 * 77.25279 * 20 19 18 43 43 H 0.97008 * 119.99755 * 180.02562 * 24 23 21 44 44 H 1.08997 * 113.61664 * 25.34700 * 29 17 2 45 45 H 1.08998 * 113.61550 * 156.25410 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3498 1.1695 -0.0971 5 6 1.4020 2.4487 0.1183 6 6 1.9994 3.5896 -0.3085 7 6 1.3140 4.8297 -0.2063 8 8 1.8310 5.8674 -0.5839 9 6 -0.0405 4.8217 0.3701 10 6 -0.7798 5.9980 0.5043 11 6 -2.0344 5.9512 1.0437 12 6 -2.5796 4.7435 1.4597 13 6 -1.8680 3.5709 1.3367 14 6 -0.5872 3.5946 0.7897 15 7 0.1444 2.4391 0.6478 16 1 -0.2415 1.5968 0.9350 17 6 2.1975 -1.2687 0.0006 18 6 1.3500 -2.4718 -0.4456 19 6 1.7965 -2.1535 -1.8823 20 7 0.9150 -1.2107 -2.5755 21 6 0.0196 -1.6677 -3.5054 22 1 -0.0365 -2.7230 -3.7280 23 6 -0.8152 -0.7744 -4.1626 24 7 -0.7464 0.5118 -3.8917 25 14 -2.0371 -1.3979 -5.4305 26 1 -1.9170 -2.8731 -5.5502 27 1 -3.4154 -1.0460 -5.0045 28 1 -1.7499 -0.7701 -6.7453 29 6 3.0411 -1.4935 -1.2655 30 1 -0.3634 -0.1040 1.0224 31 1 -0.3634 0.9374 -0.4211 32 1 -0.3633 -0.8335 -0.6013 33 1 2.9950 3.5551 -0.7256 34 1 -0.3620 6.9409 0.1836 35 1 -2.6070 6.8611 1.1473 36 1 -3.5724 4.7237 1.8844 37 1 -2.3011 2.6369 1.6629 38 1 2.7459 -1.4404 0.9268 39 1 1.7198 -3.4278 -0.0751 40 1 0.2808 -2.3378 -0.2808 41 1 2.0213 -3.0386 -2.4774 42 1 0.9658 -0.2629 -2.3759 43 1 -1.3301 1.1360 -4.3507 44 1 3.3371 -0.5698 -1.7626 45 1 3.8732 -2.1821 -1.1191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999075125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 37.159883 kcal Electronic energy + Delta-G solvation = -30424.608721 eV Core-core repulsion = 26409.307750 eV Total energy + Delta-G solvation = -4015.300971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76636 -41.39408 -39.53411 -39.24833 -38.15565 -35.95744 -34.99459 -33.28111 -32.05400 -31.73309 -30.88832 -28.60021 -27.06259 -26.37324 -25.69376 -24.80527 -24.07429 -23.27019 -21.86232 -19.96921 -19.54772 -19.49907 -19.23780 -18.55809 -17.65507 -17.40830 -17.12576 -16.65028 -16.56610 -16.16691 -15.84713 -15.54326 -15.41783 -15.12753 -15.02600 -14.89145 -14.70791 -14.52990 -14.45069 -14.09480 -13.61975 -13.33289 -13.16053 -13.06427 -12.88688 -12.79823 -12.59251 -12.48851 -12.22523 -12.10783 -11.77859 -11.69945 -11.49390 -11.08380 -10.85103 -10.73498 -10.56955 -10.06188 -9.74904 -8.98128 -8.86441 -7.93150 -5.21537 -0.71135 -0.16692 0.52243 1.39027 1.45053 1.46732 1.50579 1.57980 1.79505 2.10225 2.55853 2.89795 2.90473 3.26697 3.39253 3.55318 3.63827 3.74719 3.82161 3.89875 3.97326 4.02980 4.24420 4.25178 4.26490 4.34238 4.38390 4.40338 4.68789 4.77069 4.78606 4.88402 4.88755 4.90343 5.00749 5.05452 5.10153 5.29387 5.36489 5.37460 5.45121 5.50348 5.54131 5.64427 5.82425 5.97860 6.04631 6.27827 6.63712 6.71631 7.35523 8.10798 8.34901 9.28276 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.004320 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.613729 B = 6479.758350 C = 7882.203516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.571 5.571 3 C 0.550 3.450 4 O -0.537 6.537 5 C 0.185 3.815 6 C -0.276 4.276 7 C 0.409 3.591 8 O -0.539 6.539 9 C -0.227 4.227 10 C -0.050 4.050 11 C -0.151 4.151 12 C -0.043 4.043 13 C -0.166 4.166 14 C 0.183 3.817 15 N -0.588 5.588 16 H 0.436 0.564 17 C 0.124 3.876 18 C -0.154 4.154 19 C 0.140 3.860 20 N -0.717 5.717 21 C -0.237 4.237 22 H 0.078 0.922 23 C -0.064 4.064 24 N -0.960 5.960 25 Si 0.964 3.036 26 H -0.267 1.267 27 H -0.291 1.291 28 H -0.306 1.306 29 C -0.160 4.160 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.170 0.830 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.375 0.625 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -0.189 17.540 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.302 5.302 3 C 0.335 3.665 4 O -0.414 6.414 5 C 0.071 3.929 6 C -0.305 4.305 7 C 0.300 3.700 8 O -0.426 6.426 9 C -0.231 4.231 10 C -0.068 4.068 11 C -0.169 4.169 12 C -0.061 4.061 13 C -0.186 4.186 14 C 0.079 3.921 15 N -0.212 5.212 16 H 0.287 0.713 17 C 0.022 3.978 18 C -0.194 4.194 19 C 0.030 3.970 20 N -0.357 5.357 21 C -0.369 4.369 22 H 0.096 0.904 23 C -0.257 4.257 24 N -0.610 5.610 25 Si 0.794 3.206 26 H -0.191 1.191 27 H -0.219 1.219 28 H -0.234 1.234 29 C -0.199 4.199 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.187 0.813 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.208 0.792 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.189 0.134 17.169 17.937 hybrid contribution -0.150 0.156 -1.368 1.385 sum -5.339 0.290 15.801 16.681 Atomic orbital electron populations 1.22738 0.78339 1.06232 1.03750 1.47515 1.07755 1.04837 1.70104 1.18241 0.86950 0.83147 0.78126 1.90783 1.13953 1.86555 1.50090 1.19908 0.85062 0.94655 0.93270 1.22219 1.03899 0.92477 1.11860 1.18826 0.86745 0.88123 0.76302 1.90632 1.70121 1.35703 1.46114 1.20354 0.97724 0.94864 1.10174 1.20969 0.94617 0.96423 0.94816 1.21270 0.94781 1.00372 1.00488 1.21669 1.00443 0.90479 0.93545 1.21176 0.91167 1.02123 1.04175 1.18279 0.92965 0.84653 0.96153 1.42612 1.12096 1.11134 1.55309 0.71311 1.22073 0.94578 0.82624 0.98515 1.24045 1.00539 0.96879 0.97922 1.21531 0.90160 0.92880 0.92407 1.42428 1.41603 1.05866 1.45784 1.19632 1.10715 0.93018 1.13558 0.90434 1.25383 1.02385 0.95525 1.02443 1.69808 1.42710 1.01762 1.46703 0.85219 0.78937 0.77807 0.78607 1.19135 1.21861 1.23431 1.23745 0.98380 1.00844 0.96948 0.87596 0.90416 0.88033 0.84135 0.85289 0.82158 0.80654 0.81305 0.87759 0.85966 0.90202 0.91992 0.79177 0.94377 0.94363 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 7.07 127.77 0.90 1.71 16 2 N -0.57 -16.85 2.11 -822.56 -1.74 -18.58 16 3 C 0.55 19.11 7.33 86.92 0.64 19.75 16 4 O -0.54 -21.65 15.17 -3.69 -0.06 -21.71 16 5 C 0.18 6.16 6.26 40.51 0.25 6.42 16 6 C -0.28 -10.64 9.47 22.62 0.21 -10.42 16 7 C 0.41 15.97 6.97 25.58 0.18 16.15 16 8 O -0.54 -24.01 17.34 -5.08 -0.09 -24.10 16 9 C -0.23 -7.12 5.89 -19.99 -0.12 -7.24 16 10 C -0.05 -1.28 9.61 22.22 0.21 -1.07 16 11 C -0.15 -2.58 9.97 22.05 0.22 -2.36 16 12 C -0.04 -0.58 10.01 22.30 0.22 -0.36 16 13 C -0.17 -2.79 9.91 22.40 0.22 -2.57 16 14 C 0.18 4.66 6.66 39.12 0.26 4.92 16 15 N -0.59 -15.18 3.98 -177.43 -0.71 -15.88 16 16 H 0.44 8.59 4.32 -92.71 -0.40 8.19 16 17 C 0.12 3.37 4.16 45.52 0.19 3.56 16 18 C -0.15 -3.87 7.16 31.12 0.22 -3.64 16 19 C 0.14 4.89 4.55 45.52 0.21 5.10 16 20 N -0.72 -32.51 3.82 -320.42 -1.22 -33.73 16 21 C -0.24 -11.98 9.98 84.03 0.84 -11.14 16 22 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 24 N -0.96 -54.79 13.06 21.65 0.28 -54.51 16 25 Si 0.96 43.62 29.55 68.60 2.03 45.65 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 29 C -0.16 -5.12 7.10 31.13 0.22 -4.90 16 30 H 0.11 1.59 7.39 -2.38 -0.02 1.57 16 31 H 0.08 2.28 5.26 -2.39 -0.01 2.26 16 32 H 0.10 3.15 4.70 -2.38 -0.01 3.14 16 33 H 0.14 5.76 7.64 -2.91 -0.02 5.74 16 34 H 0.13 3.40 7.78 -2.91 -0.02 3.38 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.08 5.79 -2.38 -0.01 2.06 16 41 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 42 H 0.37 18.57 6.14 -92.71 -0.57 18.00 16 43 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 44 H 0.04 1.54 7.08 -2.39 -0.02 1.52 16 45 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -75.86 362.92 3.95 -71.92 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.09 Total: 39.99 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.35 Total: 10.96 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -3.38 Total: -122.71 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.14 Total: -45.81 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.86 3.95 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999075125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.078 kcal (2) G-P(sol) polarization free energy of solvation -75.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds