Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39589 * 123.87390 * 2 1 4 4 C 1.39125 * 130.70118 * 0.34536 * 3 2 1 5 5 C 1.39299 * 120.01650 * 180.17035 * 4 3 2 6 6 C 1.47854 * 119.97249 * 179.76400 * 5 4 3 7 7 O 1.21555 * 119.99761 * 185.79807 * 6 5 4 8 8 N 1.34775 * 120.00089 * 5.80550 * 6 5 4 9 9 C 1.47872 * 126.94351 * 354.12737 * 8 6 5 10 10 C 1.58435 * 104.82843 * 182.30502 * 9 8 6 11 11 H 1.09001 * 116.62327 * 159.51993 * 10 9 8 12 12 C 1.57435 * 99.62522 * 32.32308 * 10 9 8 13 13 C 1.49289 * 126.94712 * 174.12204 * 8 6 5 14 14 H 1.09001 * 116.14870 * 15.84529 * 13 8 6 15 15 C 1.56011 * 104.09849 * 246.70141 * 13 8 6 16 16 N 1.47875 * 105.10455 * 287.92052 * 15 13 8 17 17 C 1.36933 * 126.94313 * 181.97458 * 16 15 13 18 18 H 1.08006 * 119.99516 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00248 * 0.30494 * 17 16 15 20 20 N 1.31617 * 119.99899 * 359.71953 * 19 17 16 21 21 Si 1.86803 * 119.99816 * 179.72004 * 19 17 16 22 22 H 1.48499 * 109.46866 * 59.99867 * 21 19 17 23 23 H 1.48501 * 109.46800 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47095 * 299.99905 * 21 19 17 25 25 C 1.39613 * 120.05294 * 359.49473 * 5 4 3 26 26 C 1.38085 * 119.68974 * 0.25035 * 25 5 4 27 27 C 1.37855 * 120.10754 * 0.02562 * 26 25 5 28 28 C 1.51189 * 132.65316 * 180.02562 * 27 26 25 29 29 C 1.34351 * 123.87610 * 180.02562 * 2 1 3 30 30 O 1.21290 * 126.42621 * 359.94132 * 29 2 1 31 31 H 1.08992 * 109.47093 * 90.00445 * 1 2 3 32 32 H 1.08999 * 109.46800 * 210.00516 * 1 2 3 33 33 H 1.08997 * 109.47075 * 329.99707 * 1 2 3 34 34 H 1.08007 * 119.99309 * 359.91310 * 4 3 2 35 35 H 1.08995 * 110.31419 * 300.90635 * 9 8 6 36 36 H 1.08995 * 110.31497 * 63.09398 * 9 8 6 37 37 H 1.08994 * 112.53333 * 192.40897 * 12 10 9 38 38 H 1.08996 * 112.31335 * 64.87123 * 12 10 9 39 39 H 1.09003 * 110.32164 * 169.01365 * 15 13 8 40 40 H 1.09004 * 110.40003 * 46.86933 * 15 13 8 41 41 H 0.97002 * 119.99435 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.15555 * 180.23417 * 25 5 4 43 43 H 1.07998 * 119.95255 * 179.97438 * 26 25 5 44 44 H 1.09008 * 110.50984 * 298.63185 * 28 27 26 45 45 H 1.09004 * 110.50990 * 61.32269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2431 1.1590 0.0000 4 6 1.8731 2.5001 0.0064 5 6 2.8504 3.4927 0.0012 6 6 2.4560 4.9176 0.0027 7 8 3.3028 5.7827 -0.1081 8 7 1.1578 5.2574 0.1271 9 6 -0.0025 4.3410 0.1501 10 6 -1.2669 5.2901 0.2539 11 1 -2.2224 4.8665 -0.0554 12 6 -0.7323 6.5302 -0.5554 13 6 0.6004 6.6350 0.2695 14 1 1.2709 7.4538 0.0085 15 6 0.0115 6.6592 1.7140 16 7 -1.2011 5.8153 1.6499 17 6 -2.0822 5.5619 2.6670 18 1 -2.9365 4.9239 2.4950 19 6 -1.8806 6.1297 3.9175 20 7 -0.8395 6.9072 4.1271 21 14 -3.0869 5.7903 5.3029 22 1 -3.1310 4.3310 5.5743 23 1 -2.6494 6.5081 6.5271 24 1 -4.4388 6.2616 4.9086 25 6 4.2020 3.1430 0.0003 26 6 4.5637 1.8103 -0.0007 27 6 3.5939 0.8306 -0.0013 28 6 3.6636 -0.6797 -0.0019 29 6 2.2139 -1.1154 -0.0005 30 8 1.8051 -2.2574 0.0000 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 0.8277 2.7718 0.0111 35 1 -0.0435 3.7592 -0.7707 36 1 0.0548 3.6795 1.0145 37 1 -1.3640 7.4104 -0.4365 38 1 -0.5534 6.2939 -1.6043 39 1 -0.2512 7.6781 1.9987 40 1 0.7264 6.2413 2.4228 41 1 -0.6985 7.3037 5.0011 42 1 4.9611 3.9112 0.0002 43 1 5.6080 1.5351 -0.0018 44 1 4.1701 -1.0383 -0.8981 45 1 4.1703 -1.0390 0.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032501972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 58.780804 kcal Electronic energy + Delta-G solvation = -30165.241180 eV Core-core repulsion = 26150.877762 eV Total energy + Delta-G solvation = -4014.363418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74092 -40.28640 -38.66024 -37.66184 -35.85226 -34.02592 -33.21538 -31.73776 -30.46947 -29.18478 -28.74135 -28.26343 -26.80917 -25.45773 -24.15145 -22.75926 -22.28768 -21.34618 -20.08577 -19.87866 -18.88346 -17.65239 -17.07722 -16.87009 -16.57116 -16.26078 -15.86944 -15.32323 -15.05295 -14.62164 -14.40778 -14.21533 -14.01732 -13.92736 -13.63380 -13.42684 -13.29092 -13.09169 -12.68926 -12.34975 -12.23261 -12.15357 -11.99697 -11.79215 -11.48530 -11.22627 -11.11635 -10.92069 -10.69710 -10.62145 -10.54587 -10.37480 -10.24271 -10.14594 -9.73899 -9.63905 -9.04377 -8.77091 -8.23154 -8.03879 -7.00961 -5.84577 -3.19707 0.70515 1.07407 2.18676 2.50388 2.99098 3.22845 3.32458 3.36977 3.39267 3.83517 3.85946 4.09803 4.34848 4.52544 4.58947 4.86686 4.90600 4.98764 5.05542 5.10134 5.11462 5.17110 5.23258 5.26576 5.43320 5.45990 5.48943 5.49765 5.53375 5.67216 5.71946 5.77349 5.95571 6.11220 6.17382 6.22958 6.29370 6.31852 6.38735 6.47517 6.48577 6.58838 6.85936 7.33502 7.39739 7.63872 7.64777 7.93223 8.01893 8.43731 9.01800 9.63009 10.30976 11.27261 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003765 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.023102 B = 7434.993237 C = 8766.716424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.550 5.550 3 C 0.131 3.869 4 C -0.134 4.134 5 C -0.087 4.087 6 C 0.571 3.429 7 O -0.548 6.548 8 N -0.597 5.597 9 C 0.070 3.930 10 C 0.141 3.859 11 H 0.109 0.891 12 C -0.150 4.150 13 C 0.099 3.901 14 H 0.116 0.884 15 C 0.173 3.827 16 N -0.596 5.596 17 C -0.237 4.237 18 H 0.081 0.919 19 C -0.002 4.002 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.081 4.081 26 C -0.078 4.078 27 C -0.127 4.127 28 C -0.114 4.114 29 C 0.525 3.475 30 O -0.508 6.508 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.166 0.834 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.255 0.745 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 -10.284 -11.274 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.272 5.272 3 C 0.036 3.964 4 C -0.154 4.154 5 C -0.091 4.091 6 C 0.360 3.640 7 O -0.428 6.428 8 N -0.329 5.329 9 C -0.056 4.056 10 C 0.032 3.968 11 H 0.127 0.873 12 C -0.190 4.190 13 C -0.003 4.003 14 H 0.133 0.867 15 C 0.048 3.952 16 N -0.319 5.319 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 C -0.101 4.101 26 C -0.096 4.096 27 C -0.130 4.130 28 C -0.153 4.153 29 C 0.315 3.685 30 O -0.383 6.383 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.183 0.817 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.621 -10.476 -11.018 16.583 hybrid contribution -0.658 -0.220 0.957 1.182 sum 5.964 -10.696 -10.061 15.849 Atomic orbital electron populations 1.21901 0.77096 1.04613 1.03090 1.45712 1.07518 1.05343 1.68674 1.18049 0.90162 0.87448 1.00749 1.21985 1.02974 0.88981 1.01493 1.19711 0.93796 0.92773 1.02813 1.17758 0.81273 0.87779 0.77165 1.90741 1.49529 1.50815 1.51668 1.49022 1.04502 1.09674 1.69749 1.24153 0.88104 0.93842 0.99468 1.23760 0.94160 0.91781 0.87126 0.87297 1.24194 0.96887 1.00461 0.97439 1.24371 0.92982 0.83614 0.99351 0.86661 1.21965 0.87835 0.96299 0.89150 1.45248 1.26675 1.54714 1.05279 1.18985 1.03232 1.25691 0.88544 0.90160 1.24817 0.98059 0.99398 0.97682 1.69897 1.28569 1.35253 1.22644 0.86208 0.80290 0.77666 0.81603 1.21145 1.21563 1.21035 1.21192 0.95153 0.95968 0.97766 1.20188 0.98749 0.90996 0.99688 1.20000 0.92875 0.94821 1.05274 1.21092 0.95468 0.92474 1.06276 1.20608 0.88939 0.83938 0.75062 1.90780 1.79003 1.18895 1.49612 0.91345 0.89693 0.89719 0.81737 0.92121 0.90227 0.89475 0.91541 0.92381 0.93382 0.93428 0.83977 0.84738 0.85825 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.76 59.85 0.64 1.37 16 2 N -0.55 -6.40 3.13 -120.65 -0.38 -6.78 16 3 C 0.13 1.59 6.69 -83.71 -0.56 1.03 16 4 C -0.13 -1.77 8.46 -38.86 -0.33 -2.10 16 5 C -0.09 -1.29 5.86 -105.05 -0.62 -1.90 16 6 C 0.57 10.18 7.85 -12.33 -0.10 10.09 16 7 O -0.55 -11.17 16.69 5.32 0.09 -11.08 16 8 N -0.60 -10.43 2.95 -157.86 -0.47 -10.89 16 9 C 0.07 1.07 4.35 -0.29 0.00 1.07 16 10 C 0.14 2.39 5.63 -60.96 -0.34 2.04 16 11 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 12 C -0.15 -2.35 6.86 -22.10 -0.15 -2.51 16 13 C 0.10 1.81 5.20 -62.56 -0.33 1.48 16 14 H 0.12 2.06 8.03 -51.93 -0.42 1.64 16 15 C 0.17 3.93 4.75 -1.68 -0.01 3.93 16 16 N -0.60 -13.45 3.02 -154.62 -0.47 -13.92 16 17 C -0.24 -5.99 10.37 -15.06 -0.16 -6.15 16 18 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 19 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 20 N -0.92 -25.87 10.56 55.49 0.59 -25.29 16 21 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.08 -1.02 9.60 -39.12 -0.38 -1.40 16 26 C -0.08 -0.78 10.02 -39.78 -0.40 -1.18 16 27 C -0.13 -1.33 6.35 -104.23 -0.66 -2.00 16 28 C -0.11 -1.00 6.88 -28.46 -0.20 -1.19 16 29 C 0.53 6.30 8.23 -10.85 -0.09 6.21 16 30 O -0.51 -7.54 17.67 5.55 0.10 -7.44 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 33 H 0.08 0.77 7.59 -51.93 -0.39 0.38 16 34 H 0.17 2.11 2.38 -54.60 -0.13 1.98 16 35 H 0.06 0.75 6.88 -51.93 -0.36 0.39 16 36 H 0.08 1.34 6.86 -51.93 -0.36 0.99 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.47 7.45 -51.93 -0.39 1.08 16 40 H 0.05 1.27 7.68 -51.93 -0.40 0.88 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.14 1.75 7.66 -52.49 -0.40 1.35 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -32.73 363.80 -9.60 -42.33 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.76 Total: 2.92 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -3.76 Total: 8.64 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.73 Total: -56.88 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.19 Total: -18.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.73 -9.60 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032501972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.109 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds