Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39589 * 123.87390 * 2 1 4 4 C 1.39125 * 130.70118 * 0.34536 * 3 2 1 5 5 C 1.39299 * 120.01650 * 180.17035 * 4 3 2 6 6 C 1.47854 * 119.97249 * 179.76400 * 5 4 3 7 7 O 1.21555 * 119.99761 * 185.79807 * 6 5 4 8 8 N 1.34775 * 120.00089 * 5.80550 * 6 5 4 9 9 C 1.47872 * 126.94351 * 354.12737 * 8 6 5 10 10 C 1.58435 * 104.82843 * 182.30502 * 9 8 6 11 11 H 1.09001 * 116.62327 * 159.51993 * 10 9 8 12 12 C 1.57435 * 99.62522 * 32.32308 * 10 9 8 13 13 C 1.49289 * 126.94712 * 174.12204 * 8 6 5 14 14 H 1.09001 * 116.14870 * 15.84529 * 13 8 6 15 15 C 1.56011 * 104.09849 * 246.70141 * 13 8 6 16 16 N 1.47875 * 105.10455 * 287.92052 * 15 13 8 17 17 C 1.36933 * 126.94313 * 181.97458 * 16 15 13 18 18 H 1.08006 * 119.99516 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00248 * 0.30494 * 17 16 15 20 20 N 1.31617 * 119.99899 * 359.71953 * 19 17 16 21 21 Si 1.86803 * 119.99816 * 179.72004 * 19 17 16 22 22 H 1.48499 * 109.46866 * 59.99867 * 21 19 17 23 23 H 1.48501 * 109.46800 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47095 * 299.99905 * 21 19 17 25 25 C 1.39613 * 120.05294 * 359.49473 * 5 4 3 26 26 C 1.38085 * 119.68974 * 0.25035 * 25 5 4 27 27 C 1.37855 * 120.10754 * 0.02562 * 26 25 5 28 28 C 1.51189 * 132.65316 * 180.02562 * 27 26 25 29 29 C 1.34351 * 123.87610 * 180.02562 * 2 1 3 30 30 O 1.21290 * 126.42621 * 359.94132 * 29 2 1 31 31 H 1.08992 * 109.47093 * 90.00445 * 1 2 3 32 32 H 1.08999 * 109.46800 * 210.00516 * 1 2 3 33 33 H 1.08997 * 109.47075 * 329.99707 * 1 2 3 34 34 H 1.08007 * 119.99309 * 359.91310 * 4 3 2 35 35 H 1.08995 * 110.31419 * 300.90635 * 9 8 6 36 36 H 1.08995 * 110.31497 * 63.09398 * 9 8 6 37 37 H 1.08994 * 112.53333 * 192.40897 * 12 10 9 38 38 H 1.08996 * 112.31335 * 64.87123 * 12 10 9 39 39 H 1.09003 * 110.32164 * 169.01365 * 15 13 8 40 40 H 1.09004 * 110.40003 * 46.86933 * 15 13 8 41 41 H 0.97002 * 119.99435 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.15555 * 180.23417 * 25 5 4 43 43 H 1.07998 * 119.95255 * 179.97438 * 26 25 5 44 44 H 1.09008 * 110.50984 * 298.63185 * 28 27 26 45 45 H 1.09004 * 110.50990 * 61.32269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2431 1.1590 0.0000 4 6 1.8731 2.5001 0.0064 5 6 2.8504 3.4927 0.0012 6 6 2.4560 4.9176 0.0027 7 8 3.3028 5.7827 -0.1081 8 7 1.1578 5.2574 0.1271 9 6 -0.0025 4.3410 0.1501 10 6 -1.2669 5.2901 0.2539 11 1 -2.2224 4.8665 -0.0554 12 6 -0.7323 6.5302 -0.5554 13 6 0.6004 6.6350 0.2695 14 1 1.2709 7.4538 0.0085 15 6 0.0115 6.6592 1.7140 16 7 -1.2011 5.8153 1.6499 17 6 -2.0822 5.5619 2.6670 18 1 -2.9365 4.9239 2.4950 19 6 -1.8806 6.1297 3.9175 20 7 -0.8395 6.9072 4.1271 21 14 -3.0869 5.7903 5.3029 22 1 -3.1310 4.3310 5.5743 23 1 -2.6494 6.5081 6.5271 24 1 -4.4388 6.2616 4.9086 25 6 4.2020 3.1430 0.0003 26 6 4.5637 1.8103 -0.0007 27 6 3.5939 0.8306 -0.0013 28 6 3.6636 -0.6797 -0.0019 29 6 2.2139 -1.1154 -0.0005 30 8 1.8051 -2.2574 0.0000 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 0.8277 2.7718 0.0111 35 1 -0.0435 3.7592 -0.7707 36 1 0.0548 3.6795 1.0145 37 1 -1.3640 7.4104 -0.4365 38 1 -0.5534 6.2939 -1.6043 39 1 -0.2512 7.6781 1.9987 40 1 0.7264 6.2413 2.4228 41 1 -0.6985 7.3037 5.0011 42 1 4.9611 3.9112 0.0002 43 1 5.6080 1.5351 -0.0018 44 1 4.1701 -1.0383 -0.8981 45 1 4.1703 -1.0390 0.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032501972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 38.895437 kcal Electronic energy + Delta-G solvation = -30166.103474 eV Core-core repulsion = 26150.877762 eV Total energy + Delta-G solvation = -4015.225712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.65661 -41.64621 -39.84163 -38.92161 -36.83854 -35.61430 -34.35734 -33.21863 -31.58829 -30.58378 -30.24320 -29.36357 -27.63146 -27.05906 -25.72309 -23.79128 -23.48287 -22.39436 -21.38808 -21.23271 -20.25113 -19.01479 -18.32929 -18.03334 -17.49116 -17.42375 -17.26530 -16.65641 -16.38846 -16.04973 -15.67145 -15.41923 -15.19895 -14.84445 -14.81744 -14.62127 -14.43137 -14.12918 -13.81107 -13.60697 -13.47102 -13.30911 -13.14519 -13.03127 -13.00205 -12.87677 -12.67517 -12.45334 -12.18898 -12.14798 -12.01228 -11.60008 -11.52032 -11.46342 -11.31758 -11.06583 -10.67056 -9.97651 -9.61608 -9.03086 -8.89165 -7.84327 -5.19705 -0.28758 0.15107 1.29251 1.47442 1.49270 1.55459 1.65333 1.77990 1.94744 2.48538 2.77351 3.01815 3.26666 3.31911 3.36043 3.51793 3.65991 3.74202 3.85881 4.01126 4.06391 4.14257 4.20516 4.26943 4.37157 4.42897 4.44280 4.49879 4.58207 4.66357 4.72822 4.73962 4.77795 4.86314 4.89853 5.01948 5.12463 5.20753 5.21156 5.32447 5.44044 5.45421 5.55089 5.59935 5.66660 5.96552 6.09861 6.57122 6.76745 7.03022 7.06258 7.71449 8.41394 9.26575 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003765 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.023102 B = 7434.993237 C = 8766.716424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.553 5.553 3 C 0.120 3.880 4 C -0.135 4.135 5 C -0.113 4.113 6 C 0.565 3.435 7 O -0.584 6.584 8 N -0.602 5.602 9 C 0.079 3.921 10 C 0.137 3.863 11 H 0.141 0.859 12 C -0.129 4.129 13 C 0.101 3.899 14 H 0.115 0.885 15 C 0.187 3.813 16 N -0.615 5.615 17 C -0.230 4.230 18 H 0.097 0.903 19 C -0.068 4.068 20 N -0.956 5.956 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.304 1.304 24 H -0.274 1.274 25 C -0.087 4.087 26 C -0.063 4.063 27 C -0.115 4.115 28 C -0.104 4.104 29 C 0.517 3.483 30 O -0.543 6.543 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.020 0.980 40 H -0.003 1.003 41 H 0.243 0.757 42 H 0.140 0.860 43 H 0.174 0.826 44 H 0.154 0.846 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.533 -12.878 -13.407 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.275 5.275 3 C 0.024 3.976 4 C -0.155 4.155 5 C -0.116 4.116 6 C 0.356 3.644 7 O -0.467 6.467 8 N -0.333 5.333 9 C -0.044 4.044 10 C 0.030 3.970 11 H 0.159 0.841 12 C -0.168 4.168 13 C -0.002 4.002 14 H 0.133 0.867 15 C 0.060 3.940 16 N -0.339 5.339 17 C -0.359 4.359 18 H 0.115 0.885 19 C -0.260 4.260 20 N -0.605 5.605 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.231 1.231 24 H -0.199 1.199 25 C -0.107 4.107 26 C -0.081 4.081 27 C -0.118 4.118 28 C -0.142 4.142 29 C 0.308 3.692 30 O -0.421 6.421 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.038 0.962 40 H 0.015 0.985 41 H 0.052 0.948 42 H 0.157 0.843 43 H 0.192 0.808 44 H 0.172 0.828 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.606 -13.099 -13.204 19.738 hybrid contribution -0.637 0.525 1.574 1.778 sum 5.968 -12.574 -11.630 18.138 Atomic orbital electron populations 1.22046 0.76478 1.04664 1.04180 1.45874 1.08228 1.05210 1.68157 1.18113 0.91175 0.87104 1.01187 1.21825 1.02586 0.89302 1.01781 1.19547 0.95185 0.91025 1.05854 1.18331 0.80829 0.89051 0.76187 1.90705 1.50361 1.52187 1.53413 1.49087 1.05179 1.09439 1.69623 1.24081 0.86334 0.93060 1.00973 1.24207 0.96237 0.92581 0.83983 0.84148 1.24104 0.94322 0.99677 0.98679 1.24193 0.94502 0.84693 0.96781 0.86711 1.21542 0.87401 0.93914 0.91094 1.45482 1.25995 1.54994 1.07388 1.19491 1.03346 1.24018 0.89041 0.88512 1.25608 0.99808 1.00327 1.00302 1.70143 1.30796 1.37355 1.22199 0.85227 0.78662 0.77451 0.78439 1.20387 1.23138 1.19934 1.21330 0.94214 0.97385 0.97803 1.20487 1.00611 0.89401 0.97598 1.20310 0.92156 0.96072 1.03229 1.21193 0.93565 0.90710 1.08738 1.21142 0.90333 0.83414 0.74271 1.90766 1.79828 1.20109 1.51383 0.89762 0.89997 0.89339 0.81748 0.87751 0.91794 0.89756 0.87893 0.96186 0.98481 0.94757 0.84257 0.80830 0.82820 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.76 127.77 1.38 2.56 16 2 N -0.55 -11.61 3.13 -654.26 -2.05 -13.66 16 3 C 0.12 2.60 6.69 38.31 0.26 2.86 16 4 C -0.13 -3.34 8.46 22.74 0.19 -3.14 16 5 C -0.11 -3.23 5.86 -20.14 -0.12 -3.35 16 6 C 0.56 20.30 7.85 86.79 0.68 20.98 16 7 O -0.58 -24.47 16.69 -3.89 -0.06 -24.53 16 8 N -0.60 -20.87 2.95 -771.64 -2.28 -23.15 16 9 C 0.08 2.31 4.35 88.06 0.38 2.69 16 10 C 0.14 4.33 5.63 47.96 0.27 4.60 16 11 H 0.14 3.59 8.14 -2.39 -0.02 3.58 16 12 C -0.13 -3.77 6.86 33.59 0.23 -3.54 16 13 C 0.10 3.76 5.20 46.93 0.24 4.00 16 14 H 0.12 4.24 8.03 -2.39 -0.02 4.22 16 15 C 0.19 8.97 4.75 87.16 0.41 9.39 16 16 N -0.61 -27.98 3.02 -643.09 -1.94 -29.93 16 17 C -0.23 -11.68 10.37 84.03 0.87 -10.81 16 18 H 0.10 4.49 7.83 -2.91 -0.02 4.46 16 19 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 20 N -0.96 -56.99 10.56 21.65 0.23 -56.76 16 21 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C -0.09 -2.07 9.60 22.57 0.22 -1.86 16 26 C -0.06 -1.04 10.02 22.14 0.22 -0.82 16 27 C -0.11 -2.00 6.35 -19.61 -0.12 -2.12 16 28 C -0.10 -1.38 6.88 29.47 0.20 -1.18 16 29 C 0.52 11.10 8.23 87.94 0.72 11.83 16 30 O -0.54 -15.21 17.67 -3.06 -0.05 -15.27 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.48 7.95 -2.39 -0.02 1.46 16 33 H 0.09 1.46 7.59 -2.39 -0.02 1.44 16 34 H 0.17 3.90 2.38 -4.89 -0.01 3.89 16 35 H 0.10 2.19 6.88 -2.39 -0.02 2.18 16 36 H 0.06 2.10 6.86 -2.39 -0.02 2.09 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.02 1.09 7.45 -2.39 -0.02 1.08 16 40 H 0.00 -0.17 7.68 -2.38 -0.02 -0.19 16 41 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.14 3.34 7.66 -2.91 -0.02 3.32 16 43 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.15 1.39 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -76.54 363.80 3.40 -73.14 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.03 Total: 15.07 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 6.51 Total: 28.86 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -6.04 Total: -123.49 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.12 Total: -39.80 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.54 3.40 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032501972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.038 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds