Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 119.99963 * 2 1 4 4 O 1.21732 * 120.00021 * 185.62177 * 3 2 1 5 5 C 1.46397 * 120.00122 * 5.61515 * 3 2 1 6 6 O 1.35381 * 126.81972 * 1.50928 * 5 3 2 7 7 C 1.33659 * 107.95389 * 179.97438 * 6 5 3 8 8 N 1.30366 * 109.72992 * 0.02562 * 7 6 5 9 9 C 1.34549 * 109.01212 * 359.71998 * 8 7 6 10 10 C 1.48127 * 126.53156 * 180.29431 * 9 8 7 11 11 C 1.39476 * 120.13694 * 134.87667 * 10 9 8 12 12 C 1.37977 * 119.86276 * 179.76878 * 11 10 9 13 13 C 1.38346 * 120.13652 * 0.49167 * 12 11 10 14 14 C 1.38343 * 120.27229 * 359.78326 * 13 12 11 15 15 C 1.37983 * 120.13335 * 359.95842 * 14 13 12 16 16 C 1.46503 * 119.99644 * 179.97438 * 2 1 3 17 17 H 1.08997 * 110.91137 * 176.10333 * 16 2 1 18 18 C 1.55161 * 111.00341 * 299.99943 * 16 2 1 19 19 C 1.54322 * 102.93767 * 82.57682 * 18 16 2 20 20 N 1.47018 * 107.27732 * 22.19159 * 19 18 16 21 21 C 1.36929 * 125.65317 * 181.02327 * 20 19 18 22 22 H 1.08001 * 120.00423 * 174.76514 * 21 20 19 23 23 C 1.38818 * 119.99953 * 354.75642 * 21 20 19 24 24 N 1.31615 * 119.99864 * 212.92291 * 23 21 20 25 25 Si 1.86799 * 119.99576 * 33.20016 * 23 21 20 26 26 H 1.48504 * 109.46983 * 173.89951 * 25 23 21 27 27 H 1.48498 * 109.47268 * 293.89804 * 25 23 21 28 28 H 1.48499 * 109.47310 * 53.89873 * 25 23 21 29 29 C 1.47434 * 108.70001 * 1.28875 * 20 19 18 30 30 H 1.08994 * 109.47435 * 275.80889 * 1 2 3 31 31 H 1.09001 * 109.47097 * 35.81265 * 1 2 3 32 32 H 1.09005 * 109.47228 * 155.80915 * 1 2 3 33 33 H 1.08002 * 125.13388 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.06719 * 0.03079 * 11 10 9 35 35 H 1.08000 * 119.93481 * 180.27943 * 12 11 10 36 36 H 1.08000 * 119.86724 * 179.76589 * 13 12 11 37 37 H 1.07996 * 119.93563 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.07070 * 179.97438 * 15 14 13 39 39 H 1.08994 * 110.72407 * 324.21137 * 18 16 2 40 40 H 1.09004 * 110.86935 * 201.00812 * 18 16 2 41 41 H 1.08997 * 109.88274 * 262.77137 * 19 18 16 42 42 H 1.09006 * 109.87981 * 141.61175 * 19 18 16 43 43 H 0.96994 * 120.00686 * 5.28450 * 24 23 21 44 44 H 1.08989 * 110.36885 * 94.48121 * 29 20 19 45 45 H 1.09002 * 110.36147 * 216.80730 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1697 -0.1033 5 6 1.4122 2.4320 0.1241 6 8 0.0758 2.5885 0.2742 7 6 -0.1796 3.8983 0.3495 8 7 0.9335 4.5701 0.2530 9 6 1.9562 3.7065 0.1169 10 6 3.3902 4.0522 -0.0178 11 6 4.3501 3.3581 0.7184 12 6 5.6848 3.6816 0.5849 13 6 6.0707 4.6991 -0.2694 14 6 5.1229 5.3951 -0.9981 15 6 3.7856 5.0773 -0.8772 16 6 2.1974 -1.2688 0.0006 17 1 3.2717 -1.0979 -0.0687 18 6 1.8482 -2.1120 1.2554 19 6 0.5310 -2.8061 0.8497 20 7 0.4792 -2.8198 -0.6195 21 6 -0.5404 -3.3304 -1.3775 22 1 -0.5241 -3.2172 -2.4514 23 6 -1.5952 -3.9938 -0.7655 24 7 -2.1913 -4.9920 -1.3824 25 14 -2.1733 -3.4646 0.9301 26 1 -3.3952 -4.2252 1.2961 27 1 -1.1046 -3.7364 1.9246 28 1 -2.4799 -2.0117 0.9175 29 6 1.7100 -2.1983 -1.1417 30 1 -0.3634 0.1040 1.0223 31 1 -0.3633 0.8334 -0.6013 32 1 -0.3634 -0.9375 -0.4211 33 1 -1.1601 4.3343 0.4717 34 1 4.0497 2.5661 1.3884 35 1 6.4294 3.1418 1.1511 36 1 7.1163 4.9512 -0.3677 37 1 5.4302 6.1886 -1.6631 38 1 3.0464 5.6216 -1.4462 39 1 1.6943 -1.4687 2.1217 40 1 2.6261 -2.8485 1.4571 41 1 -0.3185 -2.2494 1.2453 42 1 0.5175 -3.8273 1.2306 43 1 -1.8461 -5.3142 -2.2296 44 1 2.4577 -2.9612 -1.3583 45 1 1.4906 -1.6159 -2.0366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033136179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = 75.609466 kcal Electronic energy + Delta-G solvation = -30160.174023 eV Core-core repulsion = 26146.540351 eV Total energy + Delta-G solvation = -4013.633672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52051 -40.00830 -39.08967 -37.82194 -35.44278 -34.38624 -32.54804 -31.96162 -30.97984 -30.03426 -29.28824 -28.48969 -26.40029 -24.76626 -23.69390 -23.49193 -22.49141 -21.73980 -20.89713 -20.52509 -19.33205 -17.95569 -17.55219 -17.26295 -17.03721 -16.46273 -16.27965 -15.42707 -15.16895 -15.02221 -14.96118 -14.52535 -14.20747 -13.69838 -13.55789 -13.43584 -13.42550 -13.05381 -12.84074 -12.80531 -12.35359 -11.99526 -11.70348 -11.67192 -11.47702 -11.36204 -11.22733 -11.08226 -10.95070 -10.88621 -10.80491 -10.22559 -10.09481 -9.78325 -9.52676 -9.13772 -8.94077 -8.68541 -8.49084 -8.33954 -7.17384 -6.46903 -3.24651 0.44378 1.26809 1.39497 2.29241 2.29967 3.00826 3.08517 3.35845 3.42919 3.62935 3.66746 3.80936 4.40752 4.54577 4.56250 4.83016 4.88360 4.90283 5.03095 5.04655 5.11716 5.22995 5.28028 5.33723 5.41477 5.47420 5.52529 5.55611 5.70510 5.76260 5.82224 5.94273 5.94947 5.97631 6.13371 6.16892 6.37633 6.38732 6.43725 6.43826 6.46802 6.54452 6.71167 6.75662 6.88158 7.27008 7.43978 7.60128 8.01764 8.23874 8.92411 9.48838 10.14765 11.00586 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.003230 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.407804 B = 8665.756370 C = 9475.358276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.577 5.577 3 C 0.598 3.402 4 O -0.516 6.516 5 C -0.088 4.088 6 O -0.176 6.176 7 C 0.194 3.806 8 N -0.484 5.484 9 C 0.109 3.891 10 C -0.027 4.027 11 C -0.050 4.050 12 C -0.127 4.127 13 C -0.108 4.108 14 C -0.133 4.133 15 C -0.084 4.084 16 C 0.121 3.879 17 H 0.110 0.890 18 C -0.140 4.140 19 C 0.116 3.884 20 N -0.607 5.607 21 C -0.347 4.347 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.901 5.901 25 Si 1.030 2.970 26 H -0.298 1.298 27 H -0.278 1.278 28 H -0.294 1.294 29 C 0.129 3.871 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.256 0.744 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.266 0.734 44 H 0.042 0.958 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 19.008 5.119 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.307 5.307 3 C 0.385 3.615 4 O -0.395 6.395 5 C -0.144 4.144 6 O -0.062 6.062 7 C -0.032 4.032 8 N -0.212 5.212 9 C -0.014 4.014 10 C -0.028 4.028 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.126 4.126 14 C -0.151 4.151 15 C -0.103 4.103 16 C 0.017 3.983 17 H 0.128 0.872 18 C -0.179 4.179 19 C -0.009 4.009 20 N -0.335 5.335 21 C -0.473 4.473 22 H 0.098 0.902 23 C -0.209 4.209 24 N -0.539 5.539 25 Si 0.862 3.138 26 H -0.226 1.226 27 H -0.205 1.205 28 H -0.222 1.222 29 C 0.003 3.997 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.271 0.729 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.871 19.233 6.157 22.478 hybrid contribution 0.532 -0.219 -1.180 1.312 sum 10.403 19.014 4.977 22.238 Atomic orbital electron populations 1.22513 0.77933 1.06664 1.01899 1.47645 1.08067 1.04877 1.70069 1.16415 0.86124 0.80954 0.78019 1.90884 1.11715 1.85485 1.51447 1.23496 0.80446 0.97094 1.13316 1.84784 1.24472 1.29271 1.67655 1.28296 1.00384 0.77089 0.97433 1.70494 0.97951 1.34187 1.18582 1.20542 0.93856 0.87024 0.99976 1.17622 0.87402 0.98185 0.99581 1.21181 0.92263 0.96265 0.97174 1.21025 0.95677 0.98036 0.99751 1.21243 0.99408 0.95790 0.96153 1.20995 0.92709 1.00756 1.00656 1.21125 0.96205 0.95696 0.97271 1.22455 0.96741 0.81998 0.97096 0.87193 1.22986 0.99036 0.98786 0.97050 1.21981 0.94435 0.98374 0.86093 1.44914 1.17879 1.70695 1.00027 1.19922 1.01928 1.34199 0.91211 0.90186 1.25563 0.96575 0.94239 1.04543 1.70903 1.46053 1.19315 1.17647 0.84497 0.76043 0.75835 0.77434 1.22554 1.20455 1.22236 1.21948 0.89830 0.93357 0.94595 0.93018 0.91580 0.85447 0.72886 0.85497 0.85770 0.86080 0.85894 0.85915 0.91183 0.89951 0.95463 0.93630 0.92390 0.93988 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 7.73 59.85 0.46 1.34 16 2 N -0.58 -9.50 2.91 -172.98 -0.50 -10.00 16 3 C 0.60 9.68 7.54 -12.98 -0.10 9.58 16 4 O -0.52 -8.85 12.33 5.16 0.06 -8.79 16 5 C -0.09 -1.30 6.81 -36.17 -0.25 -1.54 16 6 O -0.18 -2.26 7.65 4.32 0.03 -2.23 16 7 C 0.19 1.94 13.16 52.14 0.69 2.63 16 8 N -0.48 -6.21 11.28 -11.02 -0.12 -6.33 16 9 C 0.11 1.57 6.63 -82.49 -0.55 1.02 16 10 C -0.03 -0.38 5.47 -104.91 -0.57 -0.95 16 11 C -0.05 -0.67 7.56 -39.22 -0.30 -0.97 16 12 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 13 C -0.11 -1.08 10.04 -39.50 -0.40 -1.48 16 14 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 15 C -0.08 -1.03 9.79 -39.21 -0.38 -1.41 16 16 C 0.12 1.99 3.67 -65.66 -0.24 1.75 16 17 H 0.11 1.71 7.02 -51.93 -0.36 1.35 16 18 C -0.14 -2.24 6.48 -24.90 -0.16 -2.41 16 19 C 0.12 2.35 3.52 -3.07 -0.01 2.34 16 20 N -0.61 -13.73 1.85 -169.93 -0.31 -14.04 16 21 C -0.35 -9.28 9.94 -15.06 -0.15 -9.43 16 22 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 23 C -0.01 -0.18 5.44 -17.43 -0.09 -0.28 16 24 N -0.90 -27.04 13.70 55.49 0.76 -26.28 16 25 Si 1.03 24.52 25.04 -169.99 -4.26 20.26 16 26 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.06 5.10 56.52 0.29 -5.77 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 C 0.13 2.48 6.47 -2.41 -0.02 2.46 16 30 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.07 1.03 5.91 -51.93 -0.31 0.72 16 32 H 0.13 2.57 4.37 -51.93 -0.23 2.34 16 33 H 0.26 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.76 6.77 -52.49 -0.36 1.41 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 42 H 0.05 1.00 6.70 -51.93 -0.35 0.65 16 43 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 44 H 0.04 0.79 8.14 -51.94 -0.42 0.37 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -32.06 356.73 -7.54 -39.61 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.72 Total: 3.37 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.86 Total: -0.94 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.18 Total: -56.65 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.10 Total: -11.01 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.26 Total: 20.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.06 -7.54 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033136179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.217 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds