Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34775 * 120.00238 * 2 1 4 4 O 1.21724 * 120.00312 * 184.18391 * 3 2 1 5 5 C 1.46408 * 119.99737 * 4.18727 * 3 2 1 6 6 O 1.35375 * 126.82048 * 5.82960 * 5 3 2 7 7 C 1.33652 * 107.95547 * 179.97438 * 6 5 3 8 8 N 1.30365 * 109.72766 * 359.73202 * 7 6 5 9 9 C 1.34547 * 109.01322 * 0.44116 * 8 7 6 10 10 C 1.48134 * 126.52904 * 179.82947 * 9 8 7 11 11 C 1.39471 * 120.13398 * 44.16937 * 10 9 8 12 12 C 1.37985 * 119.86414 * 179.74609 * 11 10 9 13 13 C 1.38340 * 120.13047 * 0.25471 * 12 11 10 14 14 C 1.38343 * 120.27587 * 0.02562 * 13 12 11 15 15 C 1.37984 * 120.13458 * 0.02562 * 14 13 12 16 16 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.64416 * 178.31226 * 16 2 1 18 18 C 1.55163 * 110.71999 * 54.97642 * 16 2 1 19 19 C 1.54912 * 101.57889 * 277.13996 * 18 16 2 20 20 N 1.47429 * 104.83290 * 322.98971 * 19 18 16 21 21 C 1.36929 * 125.64906 * 204.09904 * 20 19 18 22 22 H 1.08000 * 120.00384 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00090 * 0.03504 * 21 20 19 24 24 N 1.31619 * 119.99947 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46982 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47320 * 120.00058 * 25 23 21 28 28 H 1.48500 * 109.47174 * 240.00387 * 25 23 21 29 29 C 1.47020 * 108.70202 * 24.12959 * 20 19 18 30 30 H 1.09001 * 109.47417 * 84.69009 * 1 2 3 31 31 H 1.08997 * 109.46910 * 204.69391 * 1 2 3 32 32 H 1.08999 * 109.47049 * 324.69269 * 1 2 3 33 33 H 1.07997 * 125.13832 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.06876 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.93251 * 180.23006 * 12 11 10 36 36 H 1.08006 * 119.86391 * 179.97438 * 13 12 11 37 37 H 1.08004 * 119.93495 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.07214 * 179.97438 * 15 14 13 39 39 H 1.09005 * 111.00364 * 35.21051 * 18 16 2 40 40 H 1.09002 * 111.00351 * 159.06421 * 18 16 2 41 41 H 1.08996 * 110.36563 * 204.15351 * 19 18 16 42 42 H 1.08995 * 110.45837 * 81.87307 * 19 18 16 43 43 H 0.97002 * 120.00299 * 180.02562 * 24 23 21 44 44 H 1.09001 * 109.88346 * 239.52658 * 29 20 19 45 45 H 1.08992 * 109.88462 * 118.35567 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3537 1.1686 -0.0769 5 6 1.4098 2.4334 0.0926 6 8 0.0803 2.5913 0.2930 7 6 -0.1804 3.9020 0.3141 8 7 0.9239 4.5731 0.1420 9 6 1.9437 3.7083 -0.0071 10 6 3.3671 4.0533 -0.2291 11 6 3.9673 5.0652 0.5199 12 6 5.2950 5.3784 0.3122 13 6 6.0290 4.6946 -0.6403 14 6 5.4377 3.6939 -1.3905 15 6 4.1106 3.3722 -1.1928 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0917 -0.0305 18 6 1.7506 -2.1601 -1.1894 19 6 0.4718 -2.8220 -0.6183 20 7 0.7744 -3.0624 0.8044 21 6 0.1811 -4.0077 1.5978 22 1 0.4737 -4.1049 2.6329 23 6 -0.7963 -4.8412 1.0718 24 7 -1.1525 -4.7233 -0.1898 25 14 -1.6062 -6.1302 2.1543 26 1 -1.0333 -6.0584 3.5225 27 1 -3.0681 -5.8770 2.2164 28 1 -1.3613 -7.4797 1.5848 29 6 1.8182 -2.1187 1.2304 30 1 -0.3634 0.0951 -1.0232 31 1 -0.3633 -0.9337 0.4293 32 1 -0.3633 0.8386 0.5939 33 1 -1.1577 4.3391 0.4564 34 1 3.3953 5.5994 1.2642 35 1 5.7619 6.1593 0.8942 36 1 7.0678 4.9436 -0.7996 37 1 6.0159 3.1638 -2.1330 38 1 3.6499 2.5910 -1.7793 39 1 1.5192 -1.5549 -2.0661 40 1 2.5076 -2.9090 -1.4223 41 1 0.2724 -3.7644 -1.1283 42 1 -0.3811 -2.1505 -0.7165 43 1 -1.8358 -5.3055 -0.5574 44 1 2.6909 -2.6667 1.5855 45 1 1.4350 -1.4746 2.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033136180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = 70.115094 kcal Electronic energy + Delta-G solvation = -29820.136903 eV Core-core repulsion = 25806.264977 eV Total energy + Delta-G solvation = -4013.871926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50596 -39.88221 -39.05189 -37.52402 -35.43168 -34.35403 -32.33571 -31.84231 -30.95678 -29.69182 -29.04462 -28.08520 -26.30000 -24.87486 -23.94827 -23.50890 -22.44028 -21.68049 -20.58780 -20.23869 -19.20768 -17.90149 -17.23720 -17.04176 -16.92591 -16.48428 -16.13802 -15.25956 -15.02354 -14.95828 -14.74893 -14.27875 -14.27061 -13.79250 -13.53275 -13.48763 -12.98895 -12.81418 -12.74288 -12.30689 -12.12403 -11.83421 -11.67422 -11.64361 -11.39012 -11.17253 -11.12322 -10.98142 -10.91601 -10.83733 -10.45280 -10.15667 -9.94001 -9.86373 -9.61621 -9.49932 -8.92333 -8.73010 -8.53582 -8.32790 -6.92868 -5.73415 -3.15712 0.47293 1.29766 1.41705 2.27443 2.35289 3.07133 3.15742 3.34785 3.41223 3.43099 3.69375 3.83009 4.42058 4.44389 4.57320 4.89570 4.92656 5.06295 5.13056 5.27705 5.33998 5.37743 5.39150 5.42649 5.54059 5.58877 5.62681 5.72571 5.79029 5.84248 5.96656 5.99367 6.20104 6.23480 6.31886 6.40503 6.45648 6.48907 6.49050 6.50115 6.62428 6.87391 6.90743 7.30205 7.37398 7.50130 7.55919 7.77055 8.08310 8.27137 9.13655 9.73961 10.37646 11.30170 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002780 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.643469 B =10069.092437 C =10817.267132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.578 5.578 3 C 0.597 3.403 4 O -0.515 6.515 5 C -0.086 4.086 6 O -0.176 6.176 7 C 0.190 3.810 8 N -0.484 5.484 9 C 0.108 3.892 10 C -0.024 4.024 11 C -0.085 4.085 12 C -0.132 4.132 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.053 4.053 16 C 0.126 3.874 17 H 0.104 0.896 18 C -0.154 4.154 19 C 0.143 3.857 20 N -0.603 5.603 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.127 3.873 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.022 0.978 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 18.932 -2.323 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.309 5.309 3 C 0.383 3.617 4 O -0.394 6.394 5 C -0.141 4.141 6 O -0.062 6.062 7 C -0.035 4.035 8 N -0.212 5.212 9 C -0.015 4.015 10 C -0.025 4.025 11 C -0.103 4.103 12 C -0.150 4.150 13 C -0.126 4.126 14 C -0.143 4.143 15 C -0.071 4.071 16 C 0.023 3.977 17 H 0.122 0.878 18 C -0.193 4.193 19 C 0.018 3.982 20 N -0.330 5.330 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.000 4.000 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.270 0.730 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.040 0.960 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.809 19.331 -2.353 20.629 hybrid contribution -0.966 -1.244 0.672 1.713 sum 5.843 18.086 -1.680 19.080 Atomic orbital electron populations 1.22459 0.78420 1.05393 1.02060 1.47758 1.07882 1.05179 1.70054 1.16429 0.86175 0.80906 0.78169 1.90893 1.11523 1.85479 1.51457 1.23581 0.80755 0.97102 1.12703 1.84804 1.24866 1.28909 1.67612 1.28316 1.00365 0.77334 0.97500 1.70486 0.98171 1.34215 1.18291 1.20534 0.93929 0.87035 1.00029 1.17612 0.88149 0.98189 0.98555 1.21111 0.94913 0.95778 0.98537 1.20995 0.94052 1.00771 0.99199 1.21234 0.99714 0.95934 0.95762 1.21023 0.94713 0.98068 1.00500 1.21128 0.93985 0.96372 0.95659 1.22275 0.96407 0.81459 0.97573 0.87821 1.23359 1.01652 0.98207 0.96073 1.22158 0.90497 1.00797 0.84719 1.44556 1.42729 1.37680 1.07997 1.19112 1.14820 1.08292 0.92851 0.90417 1.24776 0.99362 0.99859 0.96523 1.69796 1.34033 1.41087 1.12078 0.86002 0.78953 0.81252 0.79300 1.20545 1.21761 1.21718 1.21649 0.92987 0.91436 0.93941 0.92637 0.86959 0.90805 0.72968 0.85913 0.85901 0.86075 0.85748 0.85788 0.91949 0.90713 0.87508 0.95984 0.93732 0.94609 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 8.13 59.84 0.49 1.42 16 2 N -0.58 -9.66 2.82 -173.48 -0.49 -10.15 16 3 C 0.60 9.84 7.42 -12.97 -0.10 9.75 16 4 O -0.52 -9.19 12.65 5.17 0.07 -9.12 16 5 C -0.09 -1.26 6.87 -36.17 -0.25 -1.51 16 6 O -0.18 -2.18 7.38 4.36 0.03 -2.15 16 7 C 0.19 1.85 13.16 52.14 0.69 2.54 16 8 N -0.48 -6.15 11.28 -11.02 -0.12 -6.27 16 9 C 0.11 1.55 6.64 -82.49 -0.55 1.00 16 10 C -0.02 -0.34 5.42 -104.91 -0.57 -0.91 16 11 C -0.08 -1.04 9.78 -39.22 -0.38 -1.43 16 12 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 13 C -0.11 -1.11 10.04 -39.51 -0.40 -1.50 16 14 C -0.12 -1.44 10.03 -39.64 -0.40 -1.84 16 15 C -0.05 -0.72 7.58 -39.21 -0.30 -1.02 16 16 C 0.13 2.25 3.58 -66.09 -0.24 2.01 16 17 H 0.10 1.81 6.99 -51.93 -0.36 1.45 16 18 C -0.15 -2.82 6.53 -24.58 -0.16 -2.98 16 19 C 0.14 3.21 4.99 -2.52 -0.01 3.20 16 20 N -0.60 -14.53 2.97 -170.08 -0.51 -15.03 16 21 C -0.22 -5.93 10.27 -15.06 -0.15 -6.08 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -25.60 10.09 55.49 0.56 -25.04 16 25 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.13 2.59 6.29 -3.06 -0.02 2.57 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.11 2.14 4.80 -51.93 -0.25 1.89 16 32 H 0.07 1.06 5.01 -51.93 -0.26 0.80 16 33 H 0.25 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.12 1.76 6.93 -52.49 -0.36 1.40 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.11 2.77 5.87 -51.93 -0.30 2.47 16 42 H 0.02 0.51 5.55 -51.93 -0.29 0.22 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -31.21 362.51 -8.46 -39.67 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.60 Total: 3.17 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.84 Total: 3.08 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.56 Total: -56.49 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.10 Total: -11.27 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.21 -8.46 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033136180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.787 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds