Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34775 * 120.00238 * 2 1 4 4 O 1.21724 * 120.00312 * 184.18391 * 3 2 1 5 5 C 1.46408 * 119.99737 * 4.18727 * 3 2 1 6 6 O 1.35375 * 126.82048 * 5.82960 * 5 3 2 7 7 C 1.33652 * 107.95547 * 179.97438 * 6 5 3 8 8 N 1.30365 * 109.72766 * 359.73202 * 7 6 5 9 9 C 1.34547 * 109.01322 * 0.44116 * 8 7 6 10 10 C 1.48134 * 126.52904 * 179.82947 * 9 8 7 11 11 C 1.39471 * 120.13398 * 44.16937 * 10 9 8 12 12 C 1.37985 * 119.86414 * 179.74609 * 11 10 9 13 13 C 1.38340 * 120.13047 * 0.25471 * 12 11 10 14 14 C 1.38343 * 120.27587 * 0.02562 * 13 12 11 15 15 C 1.37984 * 120.13458 * 0.02562 * 14 13 12 16 16 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.64416 * 178.31226 * 16 2 1 18 18 C 1.55163 * 110.71999 * 54.97642 * 16 2 1 19 19 C 1.54912 * 101.57889 * 277.13996 * 18 16 2 20 20 N 1.47429 * 104.83290 * 322.98971 * 19 18 16 21 21 C 1.36929 * 125.64906 * 204.09904 * 20 19 18 22 22 H 1.08000 * 120.00384 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00090 * 0.03504 * 21 20 19 24 24 N 1.31619 * 119.99947 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46982 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47320 * 120.00058 * 25 23 21 28 28 H 1.48500 * 109.47174 * 240.00387 * 25 23 21 29 29 C 1.47020 * 108.70202 * 24.12959 * 20 19 18 30 30 H 1.09001 * 109.47417 * 84.69009 * 1 2 3 31 31 H 1.08997 * 109.46910 * 204.69391 * 1 2 3 32 32 H 1.08999 * 109.47049 * 324.69269 * 1 2 3 33 33 H 1.07997 * 125.13832 * 179.97438 * 7 6 5 34 34 H 1.08007 * 120.06876 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.93251 * 180.23006 * 12 11 10 36 36 H 1.08006 * 119.86391 * 179.97438 * 13 12 11 37 37 H 1.08004 * 119.93495 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.07214 * 179.97438 * 15 14 13 39 39 H 1.09005 * 111.00364 * 35.21051 * 18 16 2 40 40 H 1.09002 * 111.00351 * 159.06421 * 18 16 2 41 41 H 1.08996 * 110.36563 * 204.15351 * 19 18 16 42 42 H 1.08995 * 110.45837 * 81.87307 * 19 18 16 43 43 H 0.97002 * 120.00299 * 180.02562 * 24 23 21 44 44 H 1.09001 * 109.88346 * 239.52658 * 29 20 19 45 45 H 1.08992 * 109.88462 * 118.35567 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3537 1.1686 -0.0769 5 6 1.4098 2.4334 0.0926 6 8 0.0803 2.5913 0.2930 7 6 -0.1804 3.9020 0.3141 8 7 0.9239 4.5731 0.1420 9 6 1.9437 3.7083 -0.0071 10 6 3.3671 4.0533 -0.2291 11 6 3.9673 5.0652 0.5199 12 6 5.2950 5.3784 0.3122 13 6 6.0290 4.6946 -0.6403 14 6 5.4377 3.6939 -1.3905 15 6 4.1106 3.3722 -1.1928 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0917 -0.0305 18 6 1.7506 -2.1601 -1.1894 19 6 0.4718 -2.8220 -0.6183 20 7 0.7744 -3.0624 0.8044 21 6 0.1811 -4.0077 1.5978 22 1 0.4737 -4.1049 2.6329 23 6 -0.7963 -4.8412 1.0718 24 7 -1.1525 -4.7233 -0.1898 25 14 -1.6062 -6.1302 2.1543 26 1 -1.0333 -6.0584 3.5225 27 1 -3.0681 -5.8770 2.2164 28 1 -1.3613 -7.4797 1.5848 29 6 1.8182 -2.1187 1.2304 30 1 -0.3634 0.0951 -1.0232 31 1 -0.3633 -0.9337 0.4293 32 1 -0.3633 0.8386 0.5939 33 1 -1.1577 4.3391 0.4564 34 1 3.3953 5.5994 1.2642 35 1 5.7619 6.1593 0.8942 36 1 7.0678 4.9436 -0.7996 37 1 6.0159 3.1638 -2.1330 38 1 3.6499 2.5910 -1.7793 39 1 1.5192 -1.5549 -2.0661 40 1 2.5076 -2.9090 -1.4223 41 1 0.2724 -3.7644 -1.1283 42 1 -0.3811 -2.1505 -0.7165 43 1 -1.8358 -5.3055 -0.5574 44 1 2.6909 -2.6667 1.5855 45 1 1.4350 -1.4746 2.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033136180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = 50.641915 kcal Electronic energy + Delta-G solvation = -29820.981324 eV Core-core repulsion = 25806.264977 eV Total energy + Delta-G solvation = -4014.716346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.45673 -41.23081 -39.96252 -39.02550 -36.52768 -35.76659 -34.03615 -32.89333 -31.83017 -31.24666 -30.31969 -29.60791 -27.73497 -26.48769 -25.24729 -24.40881 -23.42822 -22.71557 -22.06819 -21.65406 -20.55301 -19.04316 -18.83681 -18.36604 -17.98415 -17.61014 -17.23083 -16.73199 -16.27215 -16.08467 -15.95583 -15.71610 -15.60242 -15.16152 -14.58019 -14.46996 -14.27490 -14.15625 -13.89484 -13.71645 -13.69657 -13.36191 -13.28885 -12.95485 -12.81876 -12.60061 -12.46532 -12.28687 -12.12646 -11.99075 -11.92342 -11.86614 -11.70845 -11.44057 -11.25600 -10.69751 -10.48241 -9.86327 -9.75462 -9.38614 -8.88416 -7.76688 -5.20786 -0.54721 0.41562 0.53175 1.27126 1.40324 1.48023 1.49053 1.58653 1.88169 1.96489 2.49724 2.84489 2.97271 3.33961 3.36890 3.61016 3.68801 3.82707 3.95732 4.06220 4.07152 4.17371 4.21667 4.26775 4.35020 4.37260 4.53974 4.59343 4.62884 4.66032 4.67951 4.81831 4.87365 4.96933 5.00030 5.06113 5.13403 5.21672 5.40888 5.50083 5.53778 5.57698 5.60402 5.63873 5.82132 6.05795 6.13872 6.31570 6.42895 6.81915 7.11784 7.76956 8.40429 9.24568 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002780 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.643469 B =10069.092437 C =10817.267132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.583 5.583 3 C 0.600 3.400 4 O -0.534 6.534 5 C -0.118 4.118 6 O -0.182 6.182 7 C 0.223 3.777 8 N -0.511 5.511 9 C 0.113 3.887 10 C -0.053 4.053 11 C -0.096 4.096 12 C -0.130 4.130 13 C -0.104 4.104 14 C -0.133 4.133 15 C -0.072 4.072 16 C 0.139 3.861 17 H 0.112 0.888 18 C -0.138 4.138 19 C 0.149 3.851 20 N -0.618 5.618 21 C -0.236 4.236 22 H 0.077 0.923 23 C -0.060 4.060 24 N -0.944 5.944 25 Si 0.976 3.024 26 H -0.271 1.271 27 H -0.292 1.292 28 H -0.293 1.293 29 C 0.128 3.872 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.309 0.691 34 H 0.128 0.872 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.935 21.043 -1.845 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.314 5.314 3 C 0.388 3.612 4 O -0.413 6.413 5 C -0.173 4.173 6 O -0.069 6.069 7 C -0.001 4.001 8 N -0.238 5.238 9 C -0.009 4.009 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.148 4.148 13 C -0.122 4.122 14 C -0.151 4.151 15 C -0.091 4.091 16 C 0.036 3.964 17 H 0.130 0.870 18 C -0.177 4.177 19 C 0.025 3.975 20 N -0.345 5.345 21 C -0.365 4.365 22 H 0.095 0.905 23 C -0.253 4.253 24 N -0.593 5.593 25 Si 0.805 3.195 26 H -0.196 1.196 27 H -0.219 1.219 28 H -0.220 1.220 29 C 0.002 3.998 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.324 0.676 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.378 21.470 -1.869 22.779 hybrid contribution -1.132 -1.737 0.541 2.143 sum 6.246 19.733 -1.329 20.740 Atomic orbital electron populations 1.22308 0.77984 1.04284 1.02607 1.47721 1.08046 1.04907 1.70694 1.16546 0.86073 0.81254 0.77342 1.90869 1.12356 1.85936 1.52161 1.23106 0.81759 0.96354 1.16119 1.84747 1.23756 1.30310 1.68064 1.29613 1.01471 0.76060 0.92989 1.70540 0.98683 1.34401 1.20164 1.20756 0.94556 0.87178 0.98452 1.17868 0.88461 0.99393 0.99644 1.21299 0.95974 0.95543 0.98610 1.21387 0.93316 1.01012 0.99064 1.21633 1.01152 0.94764 0.94678 1.21315 0.94084 0.98606 1.01105 1.21128 0.95086 0.96621 0.96225 1.22026 0.96879 0.81702 0.95802 0.87040 1.23200 0.99579 0.98286 0.96660 1.21936 0.92323 0.99204 0.84050 1.44742 1.43303 1.37895 1.08569 1.19393 1.14993 1.08830 0.93242 0.90530 1.25514 1.00201 1.01802 0.97763 1.70027 1.34306 1.41690 1.13291 0.85043 0.77708 0.78578 0.78162 1.19553 1.21876 1.21998 1.21706 0.91977 0.91115 0.95026 0.91793 0.90200 0.89144 0.67591 0.85439 0.82923 0.82870 0.84130 0.87418 0.90232 0.90207 0.91003 0.96711 0.94289 0.94428 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.22 8.13 127.77 1.04 3.26 16 2 N -0.58 -19.43 2.82 -820.96 -2.32 -21.75 16 3 C 0.60 19.80 7.42 86.37 0.64 20.44 16 4 O -0.53 -19.20 12.65 -4.42 -0.06 -19.26 16 5 C -0.12 -3.43 6.87 24.48 0.17 -3.26 16 6 O -0.18 -4.21 7.38 -7.31 -0.05 -4.26 16 7 C 0.22 3.72 13.16 130.46 1.72 5.44 16 8 N -0.51 -12.13 11.28 -303.70 -3.43 -15.55 16 9 C 0.11 3.20 6.64 41.44 0.27 3.47 16 10 C -0.05 -1.47 5.42 -20.05 -0.11 -1.58 16 11 C -0.10 -2.25 9.78 22.51 0.22 -2.03 16 12 C -0.13 -2.41 10.03 22.23 0.22 -2.19 16 13 C -0.10 -1.87 10.04 22.32 0.22 -1.65 16 14 C -0.13 -2.92 10.03 22.23 0.22 -2.70 16 15 C -0.07 -1.96 7.58 22.51 0.17 -1.79 16 16 C 0.14 4.97 3.58 46.18 0.17 5.14 16 17 H 0.11 3.85 6.99 -2.39 -0.02 3.84 16 18 C -0.14 -5.05 6.53 31.99 0.21 -4.84 16 19 C 0.15 6.89 4.99 86.86 0.43 7.32 16 20 N -0.62 -30.42 2.97 -692.00 -2.06 -32.48 16 21 C -0.24 -12.77 10.27 84.03 0.86 -11.91 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 24 N -0.94 -53.73 10.09 21.65 0.22 -53.51 16 25 Si 0.98 44.51 29.55 68.60 2.03 46.53 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 C 0.13 5.29 6.29 86.73 0.55 5.83 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 3.10 4.80 -2.39 -0.01 3.09 16 32 H 0.09 2.53 5.01 -2.39 -0.01 2.52 16 33 H 0.31 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.11 3.19 6.93 -2.91 -0.02 3.17 16 39 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 42 H 0.02 0.71 5.55 -2.39 -0.01 0.70 16 43 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.02 0.94 8.04 -2.39 -0.02 0.93 16 Total: -1.00 -69.71 362.51 2.84 -66.87 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.03 Total: 17.27 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.47 Total: 16.15 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -7.58 Total: -123.29 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.11 Total: -23.52 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.71 2.84 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033136180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.513 kcal (2) G-P(sol) polarization free energy of solvation -69.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds