Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00364 * 2 1 4 4 O 1.21547 * 120.00420 * 182.14191 * 3 2 1 5 5 C 1.47929 * 119.99775 * 2.13911 * 3 2 1 6 6 C 1.38267 * 119.23996 * 172.69464 * 5 3 2 7 7 C 1.40692 * 118.64387 * 179.76255 * 6 5 3 8 8 C 1.40237 * 122.05262 * 180.20176 * 7 6 5 9 9 C 1.36313 * 119.48675 * 180.29412 * 8 7 6 10 10 C 1.39250 * 120.93987 * 0.02562 * 9 8 7 11 11 C 1.36360 * 121.05876 * 359.97438 * 10 9 8 12 12 C 1.40039 * 119.59415 * 0.02562 * 11 10 9 13 13 C 1.41348 * 121.86018 * 179.97438 * 12 11 10 14 14 O 1.35496 * 119.95197 * 0.03107 * 13 12 11 15 15 N 1.31384 * 120.09899 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99853 * 179.71716 * 2 1 3 17 17 H 1.09003 * 110.63996 * 183.30959 * 16 2 1 18 18 C 1.55161 * 110.71886 * 59.97924 * 16 2 1 19 19 C 1.54909 * 101.58032 * 277.13608 * 18 16 2 20 20 N 1.47428 * 104.83281 * 322.99216 * 19 18 16 21 21 C 1.36935 * 125.64695 * 204.16273 * 20 19 18 22 22 H 1.07997 * 120.00269 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00020 * 359.95747 * 21 20 19 24 24 N 1.31624 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00069 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47327 * 120.00054 * 25 23 21 28 28 H 1.48498 * 109.47125 * 240.00075 * 25 23 21 29 29 C 1.47020 * 108.70173 * 24.12647 * 20 19 18 30 30 H 1.08999 * 109.47510 * 204.01591 * 1 2 3 31 31 H 1.09005 * 109.46989 * 324.02210 * 1 2 3 32 32 H 1.09001 * 109.46759 * 84.02239 * 1 2 3 33 33 H 1.07994 * 120.67697 * 359.97438 * 6 5 3 34 34 H 1.08002 * 120.26034 * 0.32258 * 8 7 6 35 35 H 1.07995 * 119.53272 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.47087 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.20671 * 180.02562 * 11 10 9 38 38 H 0.96698 * 113.99572 * 270.01934 * 14 13 12 39 39 H 1.08998 * 111.00609 * 35.20984 * 18 16 2 40 40 H 1.08994 * 111.00262 * 159.06382 * 18 16 2 41 41 H 1.08998 * 110.37048 * 204.14997 * 19 18 16 42 42 H 1.09006 * 110.45885 * 81.87184 * 19 18 16 43 43 H 0.97001 * 119.99724 * 180.02562 * 24 23 21 44 44 H 1.08999 * 109.88181 * 239.52155 * 29 20 19 45 45 H 1.09001 * 109.87877 * 118.35807 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3537 1.1675 -0.0393 5 6 1.4001 2.4478 0.0478 6 6 2.1037 3.6282 0.2006 7 6 1.3888 4.8393 0.2394 8 6 2.0301 6.0776 0.3876 9 6 1.2854 7.2187 0.4246 10 6 -0.1022 7.1718 0.3181 11 6 -0.7569 5.9845 0.1731 12 6 -0.0246 4.7916 0.1309 13 6 -0.6539 3.5346 -0.0173 14 8 -2.0027 3.4617 -0.1237 15 7 0.0671 2.4368 -0.0521 16 6 2.1974 -1.2688 0.0063 17 1 3.2715 -1.0921 0.0643 18 6 1.8431 -2.1134 -1.2461 19 6 0.5259 -2.7950 -0.7990 20 7 0.7206 -3.0901 0.6323 21 6 0.0715 -4.0651 1.3416 22 1 0.2858 -4.2027 2.3911 23 6 -0.8622 -4.8765 0.7118 24 7 -1.1240 -4.7084 -0.5672 25 14 -1.7471 -6.2071 1.6792 26 1 -1.2776 -6.1900 3.0879 27 1 -3.2102 -5.9556 1.6426 28 1 -1.4575 -7.5329 1.0764 29 6 1.7277 -2.1647 1.1716 30 1 -0.3634 -0.9387 0.4182 31 1 -0.3633 0.8317 0.6038 32 1 -0.3633 0.1070 -1.0221 33 1 3.1803 3.6209 0.2850 34 1 3.1058 6.1269 0.4712 35 1 1.7785 8.1728 0.5383 36 1 -0.6690 8.0906 0.3499 37 1 -1.8336 5.9641 0.0912 38 1 -2.4596 3.3701 0.7235 39 1 1.6775 -1.4749 -2.1139 40 1 2.6166 -2.8538 -1.4497 41 1 0.3670 -3.7170 -1.3582 42 1 -0.3183 -2.1191 -0.9355 43 1 -1.7768 -5.2752 -1.0072 44 1 2.5719 -2.7271 1.5705 45 1 1.2847 -1.5509 1.9559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033143750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 43.525531 kcal Electronic energy + Delta-G solvation = -29589.245358 eV Core-core repulsion = 25574.220422 eV Total energy + Delta-G solvation = -4015.024936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42211 -39.75158 -38.21727 -37.59024 -36.64573 -34.37793 -32.62124 -32.15422 -31.38863 -29.82661 -29.12385 -27.81586 -26.16468 -25.03610 -24.34901 -23.90098 -22.45445 -21.37358 -20.12069 -19.26926 -18.58982 -18.11404 -17.86709 -16.94217 -16.54646 -16.23667 -15.76876 -15.63772 -15.08533 -14.69233 -14.62768 -14.29015 -14.05756 -13.77987 -13.71369 -13.54157 -12.86707 -12.60561 -12.46525 -12.25938 -12.09849 -12.01555 -11.80880 -11.59477 -11.55725 -11.46418 -11.02221 -10.89185 -10.76751 -10.41918 -10.29714 -10.08571 -10.05082 -9.83017 -9.52857 -9.49497 -8.95064 -8.63100 -8.41737 -8.04987 -6.82521 -5.64156 -3.06283 -0.11379 0.36582 1.46628 2.25693 3.08802 3.17316 3.34487 3.40262 3.45955 3.48274 3.76123 4.18256 4.24162 4.39521 4.47135 4.50186 4.69235 4.79856 4.87972 5.08804 5.34422 5.40842 5.43353 5.48367 5.52130 5.55811 5.59044 5.76016 5.91408 5.97299 5.99101 6.00419 6.08924 6.30422 6.36384 6.38291 6.44304 6.61394 6.65933 6.69889 6.80386 7.06783 7.18585 7.52176 7.54321 7.64222 7.77375 7.87958 8.35637 8.37861 9.22768 9.83250 10.48107 11.39207 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002722 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.347278 B =10285.317140 C =11210.461962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.568 5.568 3 C 0.562 3.438 4 O -0.548 6.548 5 C 0.088 3.912 6 C -0.097 4.097 7 C -0.022 4.022 8 C -0.104 4.104 9 C -0.098 4.098 10 C -0.117 4.117 11 C -0.082 4.082 12 C -0.110 4.110 13 C 0.347 3.653 14 O -0.471 6.471 15 N -0.467 5.467 16 C 0.122 3.878 17 H 0.100 0.900 18 C -0.154 4.154 19 C 0.146 3.854 20 N -0.602 5.602 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.128 3.872 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.405 0.595 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.023 0.977 43 H 0.251 0.749 44 H 0.034 0.966 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 25.070 1.685 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.297 5.297 3 C 0.349 3.651 4 O -0.427 6.427 5 C -0.038 4.038 6 C -0.118 4.118 7 C -0.027 4.027 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.135 4.135 11 C -0.101 4.101 12 C -0.114 4.114 13 C 0.153 3.847 14 O -0.279 6.279 15 N -0.189 5.189 16 C 0.019 3.981 17 H 0.118 0.882 18 C -0.193 4.193 19 C 0.021 3.979 20 N -0.329 5.329 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.002 3.998 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.173 0.827 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.170 24.045 0.961 24.162 hybrid contribution -0.458 0.054 0.957 1.062 sum 1.712 24.099 1.917 24.236 Atomic orbital electron populations 1.22626 0.77486 1.04630 1.02506 1.47746 1.08457 1.04799 1.68712 1.17834 0.86467 0.83023 0.77800 1.90749 1.12770 1.86862 1.52343 1.20714 0.88045 0.94366 1.00630 1.22171 1.01896 0.90415 0.97329 1.18062 0.91912 0.94260 0.98421 1.21043 1.00492 0.90941 0.99735 1.21038 0.94114 0.98667 0.97922 1.21010 0.94639 0.98224 0.99648 1.20973 1.00480 0.91058 0.97626 1.19096 0.93767 0.94861 1.03641 1.19426 0.84996 0.86829 0.93467 1.84736 1.12820 1.94866 1.35459 1.67749 1.07264 1.30259 1.13603 1.22246 0.96355 0.82085 0.97453 0.88224 1.23347 1.01755 0.98413 0.95782 1.22102 0.90411 1.00062 0.85300 1.44552 1.45125 1.36571 1.06642 1.19105 1.15675 1.07207 0.92950 0.90490 1.24779 0.99729 0.99879 0.96225 1.69821 1.36956 1.41285 1.08836 0.86010 0.79245 0.81525 0.78779 1.20599 1.21808 1.21794 1.21611 0.92971 0.91331 0.93918 0.89114 0.88730 0.93003 0.82673 0.84515 0.85244 0.85310 0.84440 0.73632 0.92074 0.91024 0.87714 0.95933 0.93801 0.94840 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 7.39 59.84 0.44 1.71 16 2 N -0.57 -10.53 2.83 -172.91 -0.49 -11.02 16 3 C 0.56 10.02 7.65 -12.29 -0.09 9.92 16 4 O -0.55 -10.65 15.67 5.32 0.08 -10.57 16 5 C 0.09 1.33 6.62 -83.09 -0.55 0.78 16 6 C -0.10 -1.21 9.40 -38.65 -0.36 -1.58 16 7 C -0.02 -0.23 5.74 -106.84 -0.61 -0.85 16 8 C -0.10 -0.82 9.81 -39.52 -0.39 -1.21 16 9 C -0.10 -0.62 9.95 -39.90 -0.40 -1.02 16 10 C -0.12 -0.75 9.95 -39.88 -0.40 -1.14 16 11 C -0.08 -0.64 9.58 -39.58 -0.38 -1.02 16 12 C -0.11 -1.15 5.76 -106.66 -0.61 -1.77 16 13 C 0.35 4.13 7.80 -16.56 -0.13 4.00 16 14 O -0.47 -4.59 12.83 -18.18 -0.23 -4.82 16 15 N -0.47 -6.77 5.92 -9.60 -0.06 -6.82 16 16 C 0.12 2.38 3.58 -66.09 -0.24 2.15 16 17 H 0.10 1.91 7.00 -51.93 -0.36 1.55 16 18 C -0.15 -3.10 6.60 -24.58 -0.16 -3.27 16 19 C 0.15 3.52 5.01 -2.53 -0.01 3.51 16 20 N -0.60 -15.24 2.89 -170.07 -0.49 -15.73 16 21 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 25 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.13 2.77 6.15 -3.07 -0.02 2.76 16 30 H 0.09 1.92 4.97 -51.93 -0.26 1.66 16 31 H 0.10 1.58 5.20 -53.13 -0.28 1.30 16 32 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.16 1.78 7.61 -52.49 -0.40 1.38 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.14 0.82 7.65 -52.49 -0.40 0.42 16 38 H 0.40 1.96 9.06 45.56 0.41 2.38 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 42 H 0.02 0.57 5.77 -51.93 -0.30 0.27 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.59 7.90 -51.93 -0.41 0.17 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -33.38 361.69 -9.17 -42.54 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.80 Total: 3.66 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -4.16 Total: 6.33 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.48 Total: -59.54 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.15 Total: -15.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.38 -9.17 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033143750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.070 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds