Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00492 * 2 1 4 4 O 1.21550 * 120.00122 * 185.44767 * 3 2 1 5 5 C 1.47926 * 119.99637 * 5.44915 * 3 2 1 6 6 C 1.38264 * 119.24091 * 184.42065 * 5 3 2 7 7 C 1.40684 * 118.65038 * 179.97438 * 6 5 3 8 8 C 1.40242 * 122.05519 * 180.02562 * 7 6 5 9 9 C 1.36311 * 119.48172 * 179.97438 * 8 7 6 10 10 C 1.39248 * 120.94475 * 359.97438 * 9 8 7 11 11 C 1.36361 * 121.06033 * 359.97438 * 10 9 8 12 12 C 1.40049 * 119.58738 * 0.04733 * 11 10 9 13 13 C 1.41351 * 121.85087 * 180.02562 * 12 11 10 14 14 O 1.35496 * 119.95363 * 359.92922 * 13 12 11 15 15 N 1.31383 * 120.09222 * 179.68263 * 13 12 11 16 16 C 1.46507 * 119.99928 * 180.02562 * 2 1 3 17 17 H 1.08994 * 110.64478 * 176.85982 * 16 2 1 18 18 C 1.55152 * 110.71727 * 300.00341 * 16 2 1 19 19 C 1.54913 * 101.58151 * 153.86177 * 18 16 2 20 20 N 1.47419 * 104.92766 * 322.93295 * 19 18 16 21 21 C 1.36939 * 125.64891 * 204.15397 * 20 19 18 22 22 H 1.07995 * 120.00057 * 157.56818 * 21 20 19 23 23 C 1.38814 * 119.99659 * 337.56270 * 21 20 19 24 24 N 1.31623 * 119.99886 * 167.48004 * 23 21 20 25 25 Si 1.86798 * 120.00424 * 347.48489 * 23 21 20 26 26 H 1.48505 * 109.46851 * 83.85206 * 25 23 21 27 27 H 1.48496 * 109.47137 * 203.85119 * 25 23 21 28 28 H 1.48499 * 109.46981 * 323.85144 * 25 23 21 29 29 C 1.47283 * 108.56065 * 24.15647 * 20 19 18 30 30 H 1.08994 * 109.47059 * 273.64322 * 1 2 3 31 31 H 1.09010 * 109.46730 * 33.63205 * 1 2 3 32 32 H 1.08997 * 109.47169 * 153.63402 * 1 2 3 33 33 H 1.08005 * 120.67193 * 0.02562 * 6 5 3 34 34 H 1.08001 * 120.25693 * 359.95990 * 8 7 6 35 35 H 1.07999 * 119.52928 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.47001 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.20909 * 180.02562 * 11 10 9 38 38 H 0.96701 * 113.99722 * 90.00681 * 14 13 12 39 39 H 1.09006 * 111.00889 * 35.78822 * 18 16 2 40 40 H 1.09001 * 111.03695 * 271.94913 * 18 16 2 41 41 H 1.09000 * 110.36264 * 81.82940 * 19 18 16 42 42 H 1.09004 * 110.36999 * 204.03706 * 19 18 16 43 43 H 0.96994 * 120.00083 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.85535 * 239.50291 * 29 20 19 45 45 H 1.08998 * 110.00669 * 118.42725 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3504 1.1695 -0.0999 5 6 1.4044 2.4454 0.1217 6 6 2.1007 3.6361 0.0275 7 6 1.3896 4.8444 0.1445 8 6 2.0237 6.0924 0.0596 9 6 1.2833 7.2306 0.1799 10 6 -0.0927 7.1714 0.3850 11 6 -0.7403 5.9745 0.4713 12 6 -0.0120 4.7841 0.3529 13 6 -0.6344 3.5176 0.4342 14 8 -1.9719 3.4327 0.6334 15 7 0.0815 2.4227 0.3121 16 6 2.1975 -1.2688 -0.0006 17 1 3.2716 -1.0924 -0.0564 18 6 1.8435 -2.1075 1.2558 19 6 2.1169 -3.5479 0.7554 20 7 1.6769 -3.5510 -0.6516 21 6 1.2872 -4.6540 -1.3635 22 1 0.6553 -4.5406 -2.2319 23 6 1.7044 -5.9177 -0.9688 24 7 1.1431 -6.9885 -1.4893 25 14 3.0624 -6.0989 0.3009 26 1 2.4826 -5.9939 1.6641 27 1 3.7157 -7.4229 0.1416 28 1 4.0684 -5.0240 0.1066 29 6 1.7272 -2.1702 -1.1616 30 1 -0.3633 0.0653 1.0255 31 1 -0.3633 0.8557 -0.5692 32 1 -0.3633 -0.9207 -0.4564 33 1 3.1687 3.6386 -0.1334 34 1 3.0903 6.1512 -0.0995 35 1 1.7708 8.1921 0.1142 36 1 -0.6562 8.0882 0.4765 37 1 -1.8081 5.9446 0.6302 38 1 -2.4908 3.4160 -0.1825 39 1 0.7955 -1.9808 1.5277 40 1 2.4953 -1.8540 2.0919 41 1 3.1807 -3.7765 0.8208 42 1 1.5387 -4.2672 1.3353 43 1 1.4343 -7.8715 -1.2133 44 1 0.7356 -1.8614 -1.4925 45 1 2.4317 -2.1043 -1.9907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033143751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = 42.732716 kcal Electronic energy + Delta-G solvation = -29203.412066 eV Core-core repulsion = 25188.352751 eV Total energy + Delta-G solvation = -4015.059315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55821 -39.89934 -38.35371 -37.79039 -36.80709 -34.94127 -32.73643 -32.28047 -31.61662 -30.06773 -29.50537 -28.12103 -26.72563 -25.20870 -24.42886 -23.85039 -22.58158 -21.49577 -20.80236 -19.43288 -18.77112 -18.30919 -18.05368 -16.99996 -16.67740 -16.42103 -15.91711 -15.82541 -15.33216 -15.11287 -14.72300 -14.45239 -14.35671 -13.91132 -13.74594 -13.48588 -13.33614 -12.95800 -12.81737 -12.57369 -12.40901 -12.33783 -12.18612 -11.86256 -11.74520 -11.67165 -11.35515 -11.09711 -10.95203 -10.70929 -10.53181 -10.30894 -9.99244 -9.85664 -9.61922 -9.37154 -9.31023 -8.75884 -8.57084 -8.28020 -6.95822 -5.90204 -3.28116 -0.24311 0.23437 1.34526 2.10532 2.88835 3.02386 3.13376 3.36615 3.48831 3.50964 3.61527 4.02179 4.12014 4.26067 4.34721 4.55557 4.56208 4.69146 4.74388 4.96047 5.03857 5.18211 5.23049 5.28696 5.31113 5.39107 5.43738 5.45879 5.55082 5.63878 5.84931 5.88909 5.89496 5.92812 5.97618 6.01700 6.19738 6.27452 6.29129 6.47944 6.54907 6.62869 6.76735 6.83706 7.02233 7.33524 7.51716 7.75153 8.15110 8.34790 8.84598 9.70355 10.19230 11.26282 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.002412 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.392870 B =11605.352788 C =12171.746760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.579 5.579 3 C 0.567 3.433 4 O -0.539 6.539 5 C 0.084 3.916 6 C -0.093 4.093 7 C -0.023 4.023 8 C -0.103 4.103 9 C -0.097 4.097 10 C -0.115 4.115 11 C -0.083 4.083 12 C -0.109 4.109 13 C 0.348 3.652 14 O -0.472 6.472 15 N -0.472 5.472 16 C 0.123 3.877 17 H 0.107 0.893 18 C -0.138 4.138 19 C 0.100 3.900 20 N -0.609 5.609 21 C -0.239 4.239 22 H 0.092 0.908 23 C 0.019 3.981 24 N -0.917 5.917 25 Si 0.895 3.105 26 H -0.286 1.286 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.129 3.871 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.263 0.737 44 H 0.041 0.959 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 31.898 4.302 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.309 5.309 3 C 0.353 3.647 4 O -0.416 6.416 5 C -0.041 4.041 6 C -0.114 4.114 7 C -0.027 4.027 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.133 4.133 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.153 3.847 14 O -0.279 6.279 15 N -0.194 5.194 16 C 0.020 3.980 17 H 0.125 0.875 18 C -0.177 4.177 19 C -0.025 4.025 20 N -0.336 5.336 21 C -0.366 4.366 22 H 0.110 0.890 23 C -0.179 4.179 24 N -0.562 5.562 25 Si 0.726 3.274 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.196 1.196 29 C 0.003 3.997 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.174 0.826 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.264 0.736 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.795 30.738 4.788 31.339 hybrid contribution 0.768 0.478 0.274 0.946 sum -3.027 31.216 5.062 31.769 Atomic orbital electron populations 1.22250 0.77999 1.03253 1.02613 1.47699 1.08088 1.05041 1.70036 1.17821 0.86453 0.82908 0.77499 1.90784 1.13073 1.86685 1.51096 1.20617 0.88258 0.94155 1.01087 1.22202 1.01907 0.90431 0.96842 1.18063 0.92016 0.94258 0.98391 1.21065 1.00569 0.90831 0.99655 1.21060 0.94165 0.98809 0.97626 1.21033 0.94742 0.98209 0.99300 1.20975 1.00475 0.91010 0.97802 1.19086 0.94004 0.94640 1.03500 1.19343 0.85346 0.86711 0.93252 1.84743 1.12309 1.95455 1.35393 1.67595 1.07442 1.31212 1.13131 1.22287 0.97435 0.81633 0.96667 0.87454 1.23088 1.01880 0.96207 0.96513 1.22181 0.98365 0.94731 0.87215 1.44720 1.79024 1.03115 1.06787 1.18648 1.24723 0.82585 1.10622 0.89028 1.25088 0.98831 0.95180 0.98768 1.69742 1.43205 0.97496 1.45722 0.86909 0.83531 0.75727 0.81197 1.21299 1.23228 1.19603 1.21648 0.98859 0.85203 0.94028 0.92516 0.88791 0.91051 0.82579 0.84427 0.85148 0.85227 0.84403 0.73649 0.90691 0.91371 0.94631 0.91975 0.92686 0.94155 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 7.95 59.85 0.48 1.60 16 2 N -0.58 -9.28 2.89 -172.91 -0.50 -9.78 16 3 C 0.57 9.05 7.64 -12.29 -0.09 8.96 16 4 O -0.54 -9.84 15.66 5.32 0.08 -9.76 16 5 C 0.08 1.11 6.59 -83.09 -0.55 0.56 16 6 C -0.09 -1.03 9.40 -38.65 -0.36 -1.39 16 7 C -0.02 -0.21 5.74 -106.85 -0.61 -0.82 16 8 C -0.10 -0.70 9.81 -39.52 -0.39 -1.09 16 9 C -0.10 -0.52 9.95 -39.90 -0.40 -0.92 16 10 C -0.11 -0.60 9.95 -39.88 -0.40 -1.00 16 11 C -0.08 -0.53 9.58 -39.58 -0.38 -0.91 16 12 C -0.11 -0.97 5.76 -106.66 -0.61 -1.59 16 13 C 0.35 3.43 7.80 -16.56 -0.13 3.30 16 14 O -0.47 -3.55 12.83 -18.18 -0.23 -3.79 16 15 N -0.47 -5.71 6.00 -9.60 -0.06 -5.76 16 16 C 0.12 2.24 3.36 -66.09 -0.22 2.02 16 17 H 0.11 2.06 7.00 -51.93 -0.36 1.69 16 18 C -0.14 -2.49 6.66 -24.58 -0.16 -2.65 16 19 C 0.10 2.24 4.66 -2.53 -0.01 2.23 16 20 N -0.61 -15.08 3.21 -169.86 -0.55 -15.62 16 21 C -0.24 -6.88 10.66 -15.06 -0.16 -7.04 16 22 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 23 C 0.02 0.58 5.49 -17.43 -0.10 0.48 16 24 N -0.92 -28.69 13.97 55.49 0.78 -27.91 16 25 Si 0.89 23.18 24.26 -169.99 -4.12 19.06 16 26 H -0.29 -7.12 6.56 56.52 0.37 -6.75 16 27 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 28 H -0.27 -6.85 6.00 56.52 0.34 -6.51 16 29 C 0.13 2.68 6.80 -2.92 -0.02 2.66 16 30 H 0.06 0.77 8.07 -51.93 -0.42 0.36 16 31 H 0.09 1.19 5.52 -51.92 -0.29 0.91 16 32 H 0.07 1.06 6.13 -51.93 -0.32 0.74 16 33 H 0.16 1.60 7.60 -52.48 -0.40 1.21 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.14 0.63 7.65 -52.49 -0.40 0.22 16 38 H 0.40 1.05 9.06 45.56 0.41 1.46 16 39 H 0.07 1.29 7.34 -51.93 -0.38 0.91 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.83 5.08 -51.93 -0.26 0.57 16 42 H 0.06 1.45 6.42 -51.93 -0.33 1.12 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.04 0.81 5.98 -51.93 -0.31 0.50 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -35.71 358.95 -8.14 -43.85 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.83 Total: -0.10 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -4.12 Total: 4.40 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.33 Total: -59.08 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.15 Total: -13.55 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.12 Total: 19.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.71 -8.14 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033143751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.584 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds