Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00255 * 2 1 4 4 O 1.21703 * 120.00390 * 175.94517 * 3 2 1 5 5 C 1.46669 * 119.99890 * 355.94976 * 3 2 1 6 6 C 1.36723 * 125.85720 * 186.97903 * 5 3 2 7 7 C 1.39911 * 106.91254 * 179.90608 * 6 5 3 8 8 C 1.36511 * 107.02111 * 0.35565 * 7 6 5 9 9 C 1.47747 * 125.76848 * 179.77997 * 8 7 6 10 10 C 1.40038 * 120.92932 * 359.74591 * 9 8 7 11 11 C 1.37944 * 118.98465 * 179.70748 * 10 9 8 12 12 N 1.31934 * 120.90623 * 0.58156 * 11 10 9 13 13 C 1.31922 * 122.07604 * 359.71042 * 12 11 10 14 14 C 1.37946 * 120.91253 * 359.97438 * 13 12 11 15 15 O 1.34387 * 108.47051 * 359.77695 * 8 7 6 16 16 C 1.46500 * 119.99793 * 180.02562 * 2 1 3 17 17 H 1.09004 * 110.63941 * 178.30901 * 16 2 1 18 18 C 1.55157 * 110.71958 * 54.97506 * 16 2 1 19 19 C 1.55137 * 101.48403 * 205.96936 * 18 16 2 20 20 N 1.47425 * 104.72008 * 37.29441 * 19 18 16 21 21 C 1.36933 * 125.64585 * 155.81937 * 20 19 18 22 22 H 1.07999 * 120.00126 * 187.21294 * 21 20 19 23 23 C 1.38811 * 119.99951 * 7.21255 * 21 20 19 24 24 N 1.31619 * 120.00438 * 34.57183 * 23 21 20 25 25 Si 1.86808 * 119.99922 * 214.56754 * 23 21 20 26 26 H 1.48500 * 109.46923 * 179.97438 * 25 23 21 27 27 H 1.48493 * 109.47145 * 300.00010 * 25 23 21 28 28 H 1.48494 * 109.46849 * 60.00303 * 25 23 21 29 29 C 1.47020 * 108.70568 * 335.55129 * 20 19 18 30 30 H 1.08997 * 109.46696 * 275.87666 * 1 2 3 31 31 H 1.09004 * 109.46719 * 35.87136 * 1 2 3 32 32 H 1.09000 * 109.47125 * 155.87325 * 1 2 3 33 33 H 1.08001 * 126.54172 * 0.02562 * 6 5 3 34 34 H 1.08001 * 126.48947 * 180.16993 * 7 6 5 35 35 H 1.08006 * 120.50740 * 359.97296 * 10 9 8 36 36 H 1.08000 * 119.54501 * 180.29109 * 11 10 9 37 37 H 1.08000 * 119.54791 * 179.97438 * 13 12 11 38 38 H 1.07993 * 120.51189 * 179.97438 * 14 13 12 39 39 H 1.08994 * 111.00719 * 324.20869 * 18 16 2 40 40 H 1.08999 * 111.00543 * 88.02821 * 18 16 2 41 41 H 1.09005 * 110.49295 * 278.45293 * 19 18 16 42 42 H 1.08995 * 110.34124 * 156.06091 * 19 18 16 43 43 H 0.97009 * 119.99775 * 356.62262 * 24 23 21 44 44 H 1.08998 * 109.87920 * 120.70438 * 29 20 19 45 45 H 1.09000 * 109.88440 * 241.87139 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3537 1.1685 0.0745 5 6 1.4084 2.4358 -0.0897 6 6 1.9690 3.6744 -0.2342 7 6 0.9164 4.5950 -0.2782 8 6 -0.2419 3.8840 -0.1510 9 6 -1.6063 4.4508 -0.1396 10 6 -1.8136 5.8305 -0.2600 11 6 -3.1048 6.3157 -0.2505 12 7 -4.1341 5.5009 -0.1190 13 6 -3.9834 4.1960 0.0031 14 6 -2.7281 3.6240 -0.0025 15 8 0.0683 2.5813 -0.0380 16 6 2.1975 -1.2688 -0.0006 17 1 3.2726 -1.0917 -0.0306 18 6 1.7506 -2.1601 -1.1894 19 6 2.0690 -3.5788 -0.6485 20 7 1.7323 -3.5173 0.7855 21 6 1.4003 -4.5866 1.5738 22 1 1.0567 -4.4260 2.5850 23 6 1.5054 -5.8771 1.0732 24 7 2.4690 -6.1791 0.2291 25 14 0.2792 -7.1851 1.5978 26 1 0.6070 -8.4685 0.9263 27 1 0.3468 -7.3649 3.0702 28 1 -1.0911 -6.7617 1.2131 29 6 1.8182 -2.1187 1.2304 30 1 -0.3632 0.1052 1.0223 31 1 -0.3633 0.8328 -0.6022 32 1 -0.3633 -0.9379 -0.4201 33 1 3.0232 3.8990 -0.3033 34 1 1.0039 5.6658 -0.3885 35 1 -0.9755 6.5039 -0.3630 36 1 -3.2753 7.3778 -0.3475 37 1 -4.8548 3.5668 0.1089 38 1 -2.6123 2.5550 0.0983 39 1 0.6849 -2.0434 -1.3862 40 1 2.3367 -1.9431 -2.0823 41 1 3.1263 -3.8091 -0.7804 42 1 1.4521 -4.3233 -1.1515 43 1 3.0760 -5.4889 -0.0813 44 1 0.8541 -1.7944 1.6220 45 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033144246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 61.426614 kcal Electronic energy + Delta-G solvation = -28840.921499 eV Core-core repulsion = 24826.672813 eV Total energy + Delta-G solvation = -4014.248687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12573 -40.44064 -39.85624 -37.63554 -35.22671 -34.15688 -33.27775 -32.36532 -31.71851 -29.82442 -29.15093 -27.80951 -26.81575 -25.00894 -24.28221 -24.07443 -22.43437 -21.71787 -20.69552 -20.31241 -19.49165 -18.27516 -17.64849 -17.52803 -16.86091 -16.60336 -16.44447 -16.21469 -15.08754 -15.02895 -14.48743 -14.40683 -14.29199 -14.23926 -13.84464 -13.63328 -13.56323 -13.29708 -13.17856 -13.09654 -12.92499 -12.41452 -12.17507 -11.96343 -11.71852 -11.20422 -11.02950 -10.86771 -10.79188 -10.47495 -10.33830 -10.29092 -10.14440 -10.03171 -10.02274 -9.70130 -9.69354 -8.77676 -8.49927 -8.30366 -7.00879 -6.23879 -3.08856 -0.01612 0.62497 1.14866 2.09284 2.11487 2.88047 2.98992 3.36868 3.47794 3.52355 3.70276 3.84862 3.97115 4.20908 4.42219 4.45770 4.49038 4.55211 4.62252 5.00807 5.03679 5.10307 5.13466 5.18577 5.23060 5.26919 5.30114 5.34103 5.43173 5.49060 5.54327 5.59879 5.63304 5.83635 5.87983 5.95095 6.02587 6.11880 6.26606 6.31523 6.44058 6.53167 6.75444 6.87874 6.93725 7.27484 7.46307 7.72535 7.92096 8.45657 8.95880 9.80079 10.32879 11.17168 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002421 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.683837 B =11563.811041 C =12981.912871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.596 3.404 4 O -0.519 6.519 5 C -0.047 4.047 6 C -0.125 4.125 7 C -0.182 4.182 8 C 0.032 3.968 9 C 0.028 3.972 10 C -0.152 4.152 11 C 0.105 3.895 12 N -0.483 5.483 13 C 0.106 3.894 14 C -0.155 4.155 15 O -0.146 6.146 16 C 0.126 3.874 17 H 0.108 0.892 18 C -0.145 4.145 19 C 0.144 3.856 20 N -0.602 5.602 21 C -0.349 4.349 22 H 0.070 0.930 23 C -0.024 4.024 24 N -0.911 5.911 25 Si 1.067 2.933 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.132 3.868 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.270 0.730 44 H 0.031 0.969 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 25.611 -3.799 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.318 5.318 3 C 0.383 3.617 4 O -0.397 6.397 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.201 4.201 8 C -0.020 4.020 9 C 0.020 3.980 10 C -0.172 4.172 11 C -0.052 4.052 12 N -0.193 5.193 13 C -0.050 4.050 14 C -0.175 4.175 15 O -0.042 6.042 16 C 0.023 3.977 17 H 0.126 0.874 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.330 5.330 21 C -0.476 4.476 22 H 0.088 0.912 23 C -0.226 4.226 24 N -0.553 5.553 25 Si 0.897 3.103 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.005 3.995 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.216 23.969 -3.778 26.328 hybrid contribution 1.376 1.423 0.268 1.997 sum -8.840 25.392 -3.510 27.115 Atomic orbital electron populations 1.22045 0.78931 1.03713 1.02536 1.47764 1.07556 1.05624 1.70868 1.16670 0.86211 0.81180 0.77678 1.90889 1.11950 1.85789 1.51113 1.22340 0.79817 0.96661 1.11172 1.21879 1.01318 0.90167 1.01220 1.21777 0.90518 1.01097 1.06749 1.20599 0.93782 0.81726 1.05875 1.18084 0.88491 0.93264 0.98163 1.22115 0.99573 0.93839 1.01675 1.22723 0.87434 1.00186 0.94828 1.67662 1.35287 1.05049 1.11255 1.22777 0.96669 0.91127 0.94409 1.22375 0.92822 1.01729 1.00553 1.84357 1.23903 1.25777 1.70142 1.22346 0.97250 0.80921 0.97143 0.87356 1.23262 1.01290 0.97151 0.96662 1.21584 0.98142 0.92797 0.85628 1.44564 1.82022 1.01520 1.04852 1.19683 1.44161 0.85791 0.97958 0.91214 1.25722 0.99557 0.97040 1.00313 1.70861 1.12606 1.34823 1.36960 0.83451 0.75748 0.75689 0.75415 1.21141 1.21999 1.22172 1.21500 0.98378 0.85942 0.93650 0.92053 0.90376 0.89476 0.81673 0.82230 0.84023 0.82024 0.82007 0.83874 0.90992 0.91299 0.95494 0.92333 0.91847 0.95072 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 8.39 59.85 0.50 1.38 16 2 N -0.59 -9.00 2.88 -173.37 -0.50 -9.50 16 3 C 0.60 9.26 7.64 -12.86 -0.10 9.16 16 4 O -0.52 -9.51 16.25 5.19 0.08 -9.42 16 5 C -0.05 -0.60 6.77 -36.73 -0.25 -0.85 16 6 C -0.13 -1.34 10.60 -39.50 -0.42 -1.76 16 7 C -0.18 -1.56 10.26 -39.58 -0.41 -1.97 16 8 C 0.03 0.30 7.05 -36.32 -0.26 0.05 16 9 C 0.03 0.23 5.91 -104.66 -0.62 -0.39 16 10 C -0.15 -0.97 9.64 -39.01 -0.38 -1.34 16 11 C 0.10 0.69 11.17 -17.62 -0.20 0.49 16 12 N -0.48 -4.13 10.34 -13.36 -0.14 -4.27 16 13 C 0.11 0.80 11.17 -17.62 -0.20 0.60 16 14 C -0.15 -1.21 9.82 -39.02 -0.38 -1.59 16 15 O -0.15 -1.64 7.11 3.85 0.03 -1.61 16 16 C 0.13 2.26 3.35 -66.10 -0.22 2.04 16 17 H 0.11 2.07 7.00 -51.93 -0.36 1.71 16 18 C -0.14 -2.55 6.60 -24.46 -0.16 -2.72 16 19 C 0.14 3.29 5.21 -2.41 -0.01 3.28 16 20 N -0.60 -15.17 3.36 -169.93 -0.57 -15.74 16 21 C -0.35 -9.84 10.00 -15.06 -0.15 -9.99 16 22 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 23 C -0.02 -0.69 4.95 -17.43 -0.09 -0.77 16 24 N -0.91 -27.41 12.97 55.49 0.72 -26.69 16 25 Si 1.07 25.21 30.03 -169.99 -5.11 20.10 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.13 2.80 6.88 -3.06 -0.02 2.78 16 30 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.08 0.85 5.36 -51.93 -0.28 0.57 16 32 H 0.09 1.12 6.14 -51.93 -0.32 0.80 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.16 0.86 7.33 -52.49 -0.38 0.47 16 35 H 0.14 0.54 7.12 -52.48 -0.37 0.17 16 36 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 0.98 7.99 -52.49 -0.42 0.56 16 39 H 0.07 1.19 6.15 -51.93 -0.32 0.87 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.66 7.03 -51.93 -0.36 0.29 16 42 H 0.06 1.45 7.57 -51.93 -0.39 1.05 16 43 H 0.27 8.08 5.83 -40.82 -0.24 7.85 16 44 H 0.03 0.64 7.07 -51.93 -0.37 0.28 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.20 370.83 -8.82 -43.01 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.57 Total: 0.11 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.35 Total: -1.59 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.49 Total: -56.19 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.11 Total: -11.03 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.11 Total: 20.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.20 -8.82 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033144246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.439 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds