Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 120.00052 * 2 1 4 4 O 1.21706 * 120.00067 * 183.40698 * 3 2 1 5 5 C 1.46574 * 119.99740 * 3.40970 * 3 2 1 6 6 C 1.36561 * 126.56237 * 173.20930 * 5 3 2 7 7 N 1.33315 * 107.65486 * 180.02562 * 6 5 3 8 8 C 1.31639 * 108.95645 * 359.97438 * 7 6 5 9 9 C 1.47706 * 125.54126 * 179.97438 * 8 7 6 10 10 C 1.39639 * 120.15343 * 0.02673 * 9 8 7 11 11 C 1.37939 * 119.84718 * 179.97438 * 10 9 8 12 12 C 1.38363 * 120.15067 * 0.02562 * 11 10 9 13 13 C 1.38367 * 120.30672 * 359.95612 * 12 11 10 14 14 C 1.37938 * 120.15161 * 0.04265 * 13 12 11 15 15 O 1.34204 * 108.91483 * 0.26928 * 8 7 6 16 16 C 1.46494 * 120.00193 * 180.02562 * 2 1 3 17 17 H 1.09008 * 110.88642 * 176.11996 * 16 2 1 18 18 C 1.55159 * 111.00412 * 299.99860 * 16 2 1 19 19 C 1.54327 * 102.94178 * 153.57539 * 18 16 2 20 20 N 1.47019 * 107.27263 * 337.80876 * 19 18 16 21 21 C 1.36933 * 125.64903 * 178.92030 * 20 19 18 22 22 H 1.07999 * 119.99969 * 174.99444 * 21 20 19 23 23 C 1.38810 * 120.00126 * 354.98386 * 21 20 19 24 24 N 1.31624 * 120.00105 * 5.48720 * 23 21 20 25 25 Si 1.86800 * 120.00142 * 185.47731 * 23 21 20 26 26 H 1.48502 * 109.47042 * 95.00587 * 25 23 21 27 27 H 1.48505 * 109.47348 * 215.00297 * 25 23 21 28 28 H 1.48499 * 109.47439 * 335.00299 * 25 23 21 29 29 C 1.47428 * 108.70119 * 358.93947 * 20 19 18 30 30 H 1.08996 * 109.47312 * 84.00889 * 1 2 3 31 31 H 1.09005 * 109.47042 * 204.00846 * 1 2 3 32 32 H 1.09004 * 109.47333 * 324.00553 * 1 2 3 33 33 H 1.08003 * 126.17666 * 0.02840 * 6 5 3 34 34 H 1.08000 * 120.07327 * 359.70467 * 10 9 8 35 35 H 1.08001 * 119.92124 * 179.97438 * 11 10 9 36 36 H 1.08002 * 119.84741 * 179.97438 * 12 11 10 37 37 H 1.08007 * 119.92212 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.07875 * 179.97438 * 14 13 12 39 39 H 1.09008 * 110.72156 * 271.93659 * 18 16 2 40 40 H 1.09000 * 110.71905 * 35.03630 * 18 16 2 41 41 H 1.09009 * 109.88143 * 97.22434 * 19 18 16 42 42 H 1.08996 * 109.88526 * 218.23240 * 19 18 16 43 43 H 0.96996 * 120.00172 * 179.97438 * 24 23 21 44 44 H 1.08997 * 110.36589 * 265.28578 * 29 20 19 45 45 H 1.09005 * 110.36270 * 142.96729 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3543 1.1682 -0.0626 5 6 1.4079 2.4355 0.0755 6 6 1.9513 3.6806 0.2145 7 7 0.9485 4.5586 0.2418 8 6 -0.1910 3.9100 0.1251 9 6 -1.5329 4.5273 0.1122 10 6 -1.6691 5.9121 0.2294 11 6 -2.9252 6.4820 0.2160 12 6 -4.0487 5.6847 0.0873 13 6 -3.9210 4.3119 -0.0296 14 6 -2.6710 3.7288 -0.0178 15 8 0.0643 2.5962 0.0264 16 6 2.1975 -1.2686 -0.0006 17 1 3.2718 -1.0971 -0.0694 18 6 1.8484 -2.1130 1.2535 19 6 2.1064 -3.5588 0.7795 20 7 2.0265 -3.5578 -0.6885 21 6 2.2173 -4.6449 -1.4989 22 1 2.0575 -4.5595 -2.5636 23 6 2.6163 -5.8568 -0.9520 24 7 2.7069 -5.9914 0.3542 25 14 3.0245 -7.2967 -2.0698 26 1 4.4882 -7.3313 -2.3179 27 1 2.6026 -8.5633 -1.4196 28 1 2.3072 -7.1402 -3.3607 29 6 1.7075 -2.1923 -1.1436 30 1 -0.3634 0.1073 -1.0220 31 1 -0.3633 -0.9388 0.4181 32 1 -0.3634 0.8315 0.6040 33 1 3.0036 3.9123 0.2888 34 1 -0.7932 6.5351 0.3347 35 1 -3.0319 7.5528 0.3070 36 1 -5.0298 6.1360 0.0779 37 1 -4.8022 3.6955 -0.1302 38 1 -2.5727 2.6571 -0.1087 39 1 2.5044 -1.8570 2.0856 40 1 0.8034 -1.9762 1.5318 41 1 3.0982 -3.8814 1.0966 42 1 1.3500 -4.2253 1.1938 43 1 2.9854 -6.8383 0.7363 44 1 0.6326 -2.0815 -1.2864 45 1 2.2391 -1.9666 -2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033164375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = 60.308489 kcal Electronic energy + Delta-G solvation = -28742.185625 eV Core-core repulsion = 24727.888452 eV Total energy + Delta-G solvation = -4014.297172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.63980 -39.88825 -39.41918 -37.45058 -35.53628 -34.66901 -32.80731 -32.15450 -31.45085 -29.83312 -29.13402 -27.63857 -26.84178 -25.01086 -24.26098 -23.67754 -22.53482 -21.60695 -20.98595 -20.18433 -19.40369 -18.17356 -17.51789 -17.20884 -16.99639 -16.55923 -16.20386 -15.67413 -15.05443 -14.95289 -14.69340 -14.27120 -14.12648 -14.03824 -13.92870 -13.74973 -13.36469 -13.14475 -12.91211 -12.51058 -12.36371 -12.09651 -11.96128 -11.78534 -11.74779 -11.61650 -11.00429 -10.98684 -10.92691 -10.83423 -10.46219 -10.17159 -10.14569 -10.06098 -9.88413 -9.76002 -9.47021 -8.76120 -8.63276 -8.44385 -6.89293 -5.76315 -3.10164 0.03457 0.89953 1.08267 2.02584 2.28225 2.92948 3.00978 3.35490 3.38951 3.44249 3.45915 3.51659 4.30895 4.44593 4.47461 4.50857 4.60797 4.68925 4.88483 4.98845 5.00761 5.16023 5.23299 5.30167 5.35285 5.39178 5.50118 5.53613 5.55240 5.65770 5.67792 5.78868 5.85347 5.92885 5.98274 6.02557 6.09511 6.20204 6.38421 6.42782 6.48480 6.58692 6.80700 7.20467 7.36535 7.48241 7.57088 7.77556 7.96473 8.20215 9.16555 9.76445 10.41223 11.35460 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002200 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.617296 B =12725.823601 C =13525.371682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.586 5.586 3 C 0.601 3.399 4 O -0.516 6.516 5 C -0.094 4.094 6 C 0.053 3.947 7 N -0.476 5.476 8 C 0.247 3.753 9 C -0.025 4.025 10 C -0.067 4.067 11 C -0.124 4.124 12 C -0.098 4.098 13 C -0.121 4.121 14 C -0.085 4.085 15 O -0.174 6.174 16 C 0.122 3.878 17 H 0.111 0.889 18 C -0.153 4.153 19 C 0.178 3.822 20 N -0.602 5.602 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.132 3.868 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.200 0.800 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 24.382 1.902 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.388 3.612 4 O -0.394 6.394 5 C -0.150 4.150 6 C -0.092 4.092 7 N -0.205 5.205 8 C 0.046 3.954 9 C -0.026 4.026 10 C -0.086 4.086 11 C -0.141 4.141 12 C -0.117 4.117 13 C -0.139 4.139 14 C -0.104 4.104 15 O -0.061 6.061 16 C 0.019 3.981 17 H 0.129 0.871 18 C -0.192 4.192 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.358 4.358 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.005 3.995 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.217 0.783 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.855 24.695 1.949 27.909 hybrid contribution 0.131 -1.567 -0.571 1.673 sum -12.724 23.128 1.378 26.433 Atomic orbital electron populations 1.22007 0.79171 1.03588 1.02348 1.47748 1.07456 1.05775 1.70696 1.16440 0.86099 0.80870 0.77838 1.90903 1.11683 1.85637 1.51190 1.23411 0.79677 0.98245 1.13634 1.23579 1.00478 0.86652 0.98448 1.70587 0.97235 1.33747 1.18890 1.24110 0.95031 0.77792 0.98512 1.17334 0.85663 0.93273 1.06377 1.21238 0.98621 0.92664 0.96108 1.21141 0.91831 1.00473 1.00705 1.21429 0.99100 0.93874 0.97247 1.21124 0.97172 0.95185 1.00438 1.21334 0.91525 1.00315 0.97233 1.84792 1.24709 1.27661 1.68959 1.22622 0.97466 0.80311 0.97736 0.87116 1.23275 1.00653 0.98671 0.96588 1.21169 1.01248 0.88753 0.83484 1.44377 1.83352 1.02963 1.02216 1.19051 1.39294 0.87417 0.90080 0.90309 1.24843 1.01404 0.97972 0.96051 1.69959 1.53070 1.24815 1.08853 0.86087 0.78295 0.81855 0.79449 1.21519 1.21724 1.20602 1.21749 0.97194 0.85879 0.94714 0.92096 0.89541 0.90705 0.78280 0.84263 0.84979 0.85355 0.84969 0.84838 0.91681 0.92034 0.92864 0.93804 0.93644 0.95952 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 8.24 59.85 0.49 1.38 16 2 N -0.59 -9.12 2.91 -173.06 -0.50 -9.63 16 3 C 0.60 9.60 7.64 -12.90 -0.10 9.51 16 4 O -0.52 -9.64 16.28 5.18 0.08 -9.56 16 5 C -0.09 -1.28 6.79 -36.83 -0.25 -1.54 16 6 C 0.05 0.67 11.65 -17.51 -0.20 0.47 16 7 N -0.48 -5.93 10.86 -11.44 -0.12 -6.05 16 8 C 0.25 2.86 7.88 -13.77 -0.11 2.75 16 9 C -0.03 -0.23 5.87 -104.98 -0.62 -0.85 16 10 C -0.07 -0.53 9.69 -39.17 -0.38 -0.90 16 11 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 12 C -0.10 -0.52 10.04 -39.49 -0.40 -0.91 16 13 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 14 C -0.08 -0.65 9.71 -39.17 -0.38 -1.03 16 15 O -0.17 -2.11 7.21 2.81 0.02 -2.09 16 16 C 0.12 2.24 3.44 -65.79 -0.23 2.02 16 17 H 0.11 2.24 7.01 -51.92 -0.36 1.88 16 18 C -0.15 -2.84 6.50 -24.89 -0.16 -3.00 16 19 C 0.18 4.27 5.38 -3.06 -0.02 4.25 16 20 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 21 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 24 N -0.92 -26.79 10.34 55.49 0.57 -26.22 16 25 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.13 2.73 6.79 -2.53 -0.02 2.71 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.07 6.36 -51.93 -0.33 0.74 16 32 H 0.07 0.83 5.41 -51.93 -0.28 0.55 16 33 H 0.20 2.13 8.06 -52.48 -0.42 1.70 16 34 H 0.14 1.05 7.83 -52.49 -0.41 0.64 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.13 0.91 7.89 -52.49 -0.41 0.50 16 39 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.06 1.03 6.47 -51.93 -0.34 0.70 16 41 H 0.05 1.42 7.26 -51.92 -0.38 1.04 16 42 H 0.04 1.14 7.64 -51.93 -0.40 0.74 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.45 6.94 -51.93 -0.36 0.09 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -32.57 372.92 -9.12 -41.69 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.78 Total: -0.72 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -3.41 Total: 5.80 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.63 Total: -57.73 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.10 Total: -11.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.57 -9.12 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033164375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.997 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds