Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99976 * 2 1 4 4 O 1.21705 * 119.99859 * 176.32051 * 3 2 1 5 5 C 1.46571 * 119.99993 * 356.32928 * 3 2 1 6 6 C 1.36561 * 126.56219 * 186.27510 * 5 3 2 7 7 N 1.33318 * 107.65722 * 179.97438 * 6 5 3 8 8 C 1.31637 * 108.95248 * 359.97438 * 7 6 5 9 9 C 1.47707 * 125.54107 * 180.02562 * 8 7 6 10 10 C 1.39641 * 120.14715 * 179.69858 * 9 8 7 11 11 C 1.37942 * 119.84215 * 179.74439 * 10 9 8 12 12 C 1.38367 * 120.15323 * 0.52936 * 11 10 9 13 13 C 1.38375 * 120.30464 * 359.72331 * 12 11 10 14 14 C 1.37936 * 120.14777 * 0.02562 * 13 12 11 15 15 O 1.34204 * 108.91902 * 359.76912 * 8 7 6 16 16 C 1.46501 * 119.99949 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.64173 * 178.30501 * 16 2 1 18 18 C 1.55152 * 110.72327 * 54.96998 * 16 2 1 19 19 C 1.55130 * 101.48912 * 205.96857 * 18 16 2 20 20 N 1.47429 * 104.71830 * 37.29421 * 19 18 16 21 21 C 1.36932 * 125.64672 * 155.81797 * 20 19 18 22 22 H 1.08002 * 120.00014 * 185.80166 * 21 20 19 23 23 C 1.38817 * 119.99866 * 5.79864 * 21 20 19 24 24 N 1.31615 * 120.00050 * 34.85622 * 23 21 20 25 25 Si 1.86801 * 119.99879 * 214.84920 * 23 21 20 26 26 H 1.48503 * 109.47035 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.47508 * 300.00217 * 25 23 21 28 28 H 1.48505 * 109.47081 * 60.00430 * 25 23 21 29 29 C 1.47023 * 108.70511 * 335.55442 * 20 19 18 30 30 H 1.09007 * 109.46704 * 275.64195 * 1 2 3 31 31 H 1.08992 * 109.47491 * 35.63589 * 1 2 3 32 32 H 1.09004 * 109.47349 * 155.64575 * 1 2 3 33 33 H 1.08003 * 126.17661 * 359.97438 * 6 5 3 34 34 H 1.07999 * 120.08086 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.92686 * 180.23497 * 11 10 9 36 36 H 1.07996 * 119.85147 * 179.70118 * 12 11 10 37 37 H 1.07999 * 119.92718 * 179.97438 * 13 12 11 38 38 H 1.08006 * 120.07645 * 179.97438 * 14 13 12 39 39 H 1.09002 * 111.00553 * 324.21325 * 18 16 2 40 40 H 1.09003 * 111.00488 * 88.01777 * 18 16 2 41 41 H 1.09001 * 110.49820 * 278.45511 * 19 18 16 42 42 H 1.08999 * 110.34242 * 156.05280 * 19 18 16 43 43 H 0.97001 * 119.99771 * 355.70078 * 24 23 21 44 44 H 1.08999 * 109.88385 * 120.69939 * 29 20 19 45 45 H 1.08996 * 109.88172 * 241.87231 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3541 1.1683 0.0676 5 6 1.4083 2.4353 -0.0813 6 6 1.9527 3.6809 -0.2111 7 7 0.9499 4.5586 -0.2482 8 6 -0.1907 3.9092 -0.1475 9 6 -1.5329 4.5258 -0.1493 10 6 -2.6723 3.7258 -0.0419 11 6 -3.9225 4.3087 -0.0389 12 6 -4.0495 5.6818 -0.1530 13 6 -2.9247 6.4801 -0.2651 14 6 -1.6683 5.9108 -0.2643 15 8 0.0640 2.5953 -0.0486 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0917 -0.0307 18 6 1.7506 -2.1601 -1.1892 19 6 2.0691 -3.5788 -0.6484 20 7 1.7325 -3.5173 0.7856 21 6 1.4005 -4.5865 1.5740 22 1 1.0788 -4.4272 2.5926 23 6 1.4776 -5.8753 1.0640 24 7 2.4237 -6.1872 0.2039 25 14 0.2385 -7.1670 1.5986 26 1 0.5364 -8.4514 0.9154 27 1 0.3247 -7.3572 3.0688 28 1 -1.1305 -6.7193 1.2368 29 6 1.8183 -2.1186 1.2305 30 1 -0.3633 0.1010 1.0228 31 1 -0.3634 0.8351 -0.5987 32 1 -0.3634 -0.9362 -0.4238 33 1 3.0057 3.9132 -0.2726 34 1 -2.5749 2.6535 0.0424 35 1 -4.8046 3.6915 0.0480 36 1 -5.0308 6.1326 -0.1550 37 1 -3.0309 7.5511 -0.3543 38 1 -0.7912 6.5349 -0.3523 39 1 0.6849 -2.0435 -1.3860 40 1 2.3366 -1.9431 -2.0823 41 1 3.1263 -3.8091 -0.7803 42 1 1.4521 -4.3234 -1.1513 43 1 3.0286 -5.5022 -0.1213 44 1 0.8542 -1.7943 1.6221 45 1 2.5850 -2.0205 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033164376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 60.720134 kcal Electronic energy + Delta-G solvation = -28846.100756 eV Core-core repulsion = 24831.821434 eV Total energy + Delta-G solvation = -4014.279322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68265 -40.00051 -39.44723 -37.65471 -35.62499 -34.79321 -32.85647 -32.30188 -31.46778 -29.84277 -29.18432 -27.83978 -26.82889 -24.90062 -24.25614 -23.72415 -22.58561 -21.64028 -21.07072 -20.30851 -19.46736 -18.20770 -17.66895 -17.58363 -17.21242 -16.63488 -16.34084 -15.70609 -15.13309 -15.03623 -14.47748 -14.47105 -14.08790 -13.99310 -13.84625 -13.75822 -13.40383 -13.30978 -13.20073 -12.98501 -12.48194 -12.17582 -11.98194 -11.80759 -11.76461 -11.63046 -11.19447 -11.02599 -10.88319 -10.80047 -10.46944 -10.29142 -10.18161 -10.14672 -10.02795 -9.70383 -9.48653 -8.81291 -8.52977 -8.29753 -7.01918 -6.24163 -3.08463 0.00102 0.88314 1.04371 1.97975 2.24436 2.85616 2.93717 3.33549 3.47368 3.47795 3.51948 3.70000 4.26454 4.42245 4.47526 4.54576 4.58777 4.64989 4.86026 4.94689 4.97647 5.10566 5.12407 5.16636 5.24465 5.31154 5.35438 5.42530 5.51271 5.52119 5.58484 5.74494 5.80762 5.87247 5.90525 5.96544 5.99831 6.02563 6.25921 6.30385 6.36729 6.52041 6.69601 6.87172 6.93145 7.15036 7.29776 7.71845 7.88414 8.45428 8.95388 9.80022 10.32591 11.16986 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.002408 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.778217 B =11624.652217 C =12994.181021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.603 3.397 4 O -0.517 6.517 5 C -0.096 4.096 6 C 0.055 3.945 7 N -0.477 5.477 8 C 0.249 3.751 9 C -0.026 4.026 10 C -0.084 4.084 11 C -0.121 4.121 12 C -0.097 4.097 13 C -0.124 4.124 14 C -0.067 4.067 15 O -0.174 6.174 16 C 0.126 3.874 17 H 0.109 0.891 18 C -0.145 4.145 19 C 0.144 3.856 20 N -0.602 5.602 21 C -0.350 4.350 22 H 0.071 0.929 23 C -0.024 4.024 24 N -0.912 5.912 25 Si 1.067 2.933 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.133 3.867 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.270 0.730 44 H 0.031 0.969 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 25.097 -3.554 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.317 5.317 3 C 0.389 3.611 4 O -0.395 6.395 5 C -0.152 4.152 6 C -0.090 4.090 7 N -0.205 5.205 8 C 0.048 3.952 9 C -0.028 4.028 10 C -0.104 4.104 11 C -0.139 4.139 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.086 4.086 15 O -0.061 6.061 16 C 0.024 3.976 17 H 0.127 0.873 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.330 5.330 21 C -0.477 4.477 22 H 0.088 0.912 23 C -0.226 4.226 24 N -0.553 5.553 25 Si 0.897 3.103 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.006 3.994 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.217 0.783 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.139 23.960 -3.630 27.104 hybrid contribution 0.413 0.897 0.349 1.048 sum -11.726 24.858 -3.281 27.680 Atomic orbital electron populations 1.22041 0.78933 1.03723 1.02535 1.47748 1.07566 1.05592 1.70835 1.16437 0.86079 0.80886 0.77686 1.90898 1.11724 1.85677 1.51223 1.23349 0.79705 0.98160 1.13954 1.23583 1.00500 0.86624 0.98269 1.70595 0.97199 1.33716 1.18972 1.24128 0.95046 0.77755 0.98299 1.17336 0.85616 0.93287 1.06527 1.21339 0.91526 1.00312 0.97196 1.21130 0.97185 0.95197 1.00395 1.21438 0.99117 0.93862 0.97167 1.21146 0.91811 1.00483 1.00712 1.21236 0.98643 0.92649 0.96067 1.84797 1.24635 1.27676 1.69001 1.22357 0.97259 0.80823 0.97188 0.87281 1.23265 1.01296 0.97144 0.96661 1.21596 0.98130 0.92804 0.85661 1.44567 1.82027 1.01495 1.04905 1.19686 1.44880 0.85991 0.97095 0.91152 1.25719 0.99678 0.96949 1.00288 1.70863 1.13365 1.34842 1.36235 0.83442 0.75766 0.75657 0.75391 1.21142 1.22007 1.22184 1.21493 0.98399 0.85906 0.93632 0.92024 0.90528 0.89384 0.78263 0.84844 0.84937 0.85321 0.84951 0.84258 0.91000 0.91264 0.95499 0.92253 0.91808 0.95073 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.43 59.85 0.50 1.39 16 2 N -0.59 -9.07 2.88 -173.41 -0.50 -9.57 16 3 C 0.60 9.48 7.64 -12.90 -0.10 9.38 16 4 O -0.52 -9.43 16.27 5.18 0.08 -9.35 16 5 C -0.10 -1.30 6.80 -36.83 -0.25 -1.55 16 6 C 0.06 0.68 11.65 -17.51 -0.20 0.48 16 7 N -0.48 -5.88 10.86 -11.44 -0.12 -6.01 16 8 C 0.25 2.87 7.88 -13.77 -0.11 2.77 16 9 C -0.03 -0.25 5.87 -104.98 -0.62 -0.86 16 10 C -0.08 -0.65 9.72 -39.17 -0.38 -1.03 16 11 C -0.12 -0.73 10.03 -39.64 -0.40 -1.13 16 12 C -0.10 -0.52 10.04 -39.48 -0.40 -0.92 16 13 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 14 C -0.07 -0.52 9.69 -39.17 -0.38 -0.90 16 15 O -0.17 -2.11 7.19 2.80 0.02 -2.09 16 16 C 0.13 2.27 3.35 -66.10 -0.22 2.05 16 17 H 0.11 2.08 7.00 -51.93 -0.36 1.71 16 18 C -0.14 -2.56 6.60 -24.47 -0.16 -2.72 16 19 C 0.14 3.28 5.18 -2.41 -0.01 3.27 16 20 N -0.60 -15.18 3.37 -169.93 -0.57 -15.75 16 21 C -0.35 -9.85 10.01 -15.06 -0.15 -10.01 16 22 H 0.07 1.99 8.02 -52.49 -0.42 1.57 16 23 C -0.02 -0.69 4.96 -17.43 -0.09 -0.78 16 24 N -0.91 -27.41 12.96 55.49 0.72 -26.70 16 25 Si 1.07 25.20 30.03 -169.99 -5.11 20.10 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.13 2.81 6.88 -3.06 -0.02 2.79 16 30 H 0.06 0.75 8.08 -51.92 -0.42 0.33 16 31 H 0.08 0.85 5.34 -51.93 -0.28 0.58 16 32 H 0.09 1.14 6.13 -51.93 -0.32 0.82 16 33 H 0.20 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.13 0.93 7.89 -52.49 -0.41 0.52 16 35 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 38 H 0.14 1.05 7.83 -52.48 -0.41 0.64 16 39 H 0.07 1.19 6.14 -51.93 -0.32 0.87 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.65 7.06 -51.93 -0.37 0.29 16 42 H 0.06 1.47 7.50 -51.93 -0.39 1.08 16 43 H 0.27 8.08 5.77 -40.82 -0.24 7.84 16 44 H 0.03 0.64 7.07 -51.93 -0.37 0.28 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -33.53 372.00 -8.89 -42.41 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.64 Total: 0.23 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.38 Total: 1.12 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.48 Total: -58.02 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.10 Total: -11.44 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.11 Total: 20.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.53 -8.89 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033164376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.135 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds