Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99906 * 2 1 4 4 O 1.21514 * 120.00151 * 184.29218 * 3 2 1 5 5 C 1.48154 * 120.00040 * 4.29074 * 3 2 1 6 6 C 1.40038 * 120.85979 * 331.20463 * 5 3 2 7 7 C 1.38141 * 119.26346 * 179.97438 * 6 5 3 8 8 N 1.31725 * 121.06314 * 359.74231 * 7 6 5 9 9 C 1.32818 * 121.90128 * 0.52583 * 8 7 6 10 10 C 1.47660 * 119.69368 * 179.74976 * 9 8 7 11 11 C 1.36022 * 125.94096 * 359.73115 * 10 9 8 12 12 C 1.40827 * 106.73834 * 179.71282 * 11 10 9 13 13 C 1.34806 * 107.04395 * 0.26661 * 12 11 10 14 14 O 1.34235 * 108.68303 * 359.97438 * 13 12 11 15 15 C 1.39466 * 120.86789 * 151.18234 * 5 3 2 16 16 C 1.46500 * 120.00463 * 180.02562 * 2 1 3 17 17 H 1.08990 * 110.64575 * 181.68600 * 16 2 1 18 18 C 1.55159 * 110.71591 * 305.02050 * 16 2 1 19 19 C 1.54916 * 101.58105 * 153.86329 * 18 16 2 20 20 N 1.47419 * 104.83078 * 322.99149 * 19 18 16 21 21 C 1.36944 * 125.64897 * 204.09083 * 20 19 18 22 22 H 1.07998 * 119.99829 * 162.60478 * 21 20 19 23 23 C 1.38811 * 119.99840 * 342.61053 * 21 20 19 24 24 N 1.31620 * 119.99989 * 353.82644 * 23 21 20 25 25 Si 1.86798 * 120.00192 * 173.82927 * 23 21 20 26 26 H 1.48500 * 109.47100 * 94.96158 * 25 23 21 27 27 H 1.48496 * 109.47239 * 214.96556 * 25 23 21 28 28 H 1.48500 * 109.46995 * 334.96366 * 25 23 21 29 29 C 1.47021 * 108.70821 * 24.12625 * 20 19 18 30 30 H 1.09001 * 109.47316 * 90.84862 * 1 2 3 31 31 H 1.08998 * 109.46496 * 210.84662 * 1 2 3 32 32 H 1.09001 * 109.46906 * 330.84362 * 1 2 3 33 33 H 1.07998 * 120.36698 * 359.97438 * 6 5 3 34 34 H 1.07998 * 119.46769 * 179.97438 * 7 6 5 35 35 H 1.08009 * 126.63530 * 359.97379 * 11 10 9 36 36 H 1.08007 * 126.48084 * 180.29409 * 12 11 10 37 37 H 1.07997 * 125.65969 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.55326 * 359.97438 * 15 5 3 39 39 H 1.09001 * 111.00853 * 271.94009 * 18 16 2 40 40 H 1.09000 * 111.00608 * 35.79519 * 18 16 2 41 41 H 1.08996 * 110.36638 * 204.15454 * 19 18 16 42 42 H 1.09000 * 110.45757 * 81.87328 * 19 18 16 43 43 H 0.97001 * 120.00509 * 180.02562 * 24 23 21 44 44 H 1.09001 * 109.88509 * 239.52409 * 29 20 19 45 45 H 1.09003 * 109.88454 * 118.35378 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1688 -0.0788 5 6 1.4012 2.4485 0.0960 6 6 0.0950 2.5639 -0.3955 7 6 -0.5624 3.7741 -0.2883 8 7 0.0179 4.8155 0.2719 9 6 1.2565 4.7570 0.7480 10 6 1.8616 5.9561 1.3616 11 6 1.2659 7.1715 1.4953 12 6 2.1966 8.0110 2.1373 13 6 3.3057 7.2767 2.3564 14 8 3.1009 6.0370 1.8839 15 6 1.9894 3.5709 0.6785 16 6 2.1976 -1.2687 -0.0006 17 1 3.2726 -1.0917 0.0295 18 6 1.7509 -2.1610 1.1875 19 6 2.0640 -3.5785 0.6468 20 7 1.7325 -3.5167 -0.7883 21 6 1.4005 -4.5854 -1.5776 22 1 0.9081 -4.4245 -2.5252 23 6 1.6967 -5.8755 -1.1595 24 7 2.4032 -6.0668 -0.0655 25 14 1.0929 -7.3400 -2.1494 26 1 2.1590 -7.7778 -3.0860 27 1 0.7547 -8.4546 -1.2283 28 1 -0.1150 -6.9517 -2.9211 29 6 1.8183 -2.1177 -1.2322 30 1 -0.3634 -0.0152 -1.0275 31 1 -0.3632 -0.8823 0.5269 32 1 -0.3633 0.8975 0.5007 33 1 -0.3930 1.7161 -0.8532 34 1 -1.5697 3.8669 -0.6666 35 1 0.2698 7.4398 1.1752 36 1 2.0496 9.0473 2.4040 37 1 4.2088 7.6272 2.8337 38 1 2.9947 3.5229 1.0702 39 1 2.3374 -1.9451 2.0806 40 1 0.6851 -2.0446 1.3845 41 1 1.4432 -4.3213 1.1478 42 1 3.1196 -3.8135 0.7825 43 1 2.6105 -6.9683 0.2265 44 1 0.8541 -1.7931 -1.6235 45 1 2.5849 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033177290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 77.726720 kcal Electronic energy + Delta-G solvation = -28634.104207 eV Core-core repulsion = 24620.562346 eV Total energy + Delta-G solvation = -4013.541861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.87486 -40.98392 -39.40433 -37.40583 -35.21450 -33.64884 -33.01521 -32.51159 -31.93574 -29.36742 -28.99938 -27.74965 -27.06942 -25.15243 -24.21196 -23.95132 -22.03021 -21.53970 -20.48275 -20.34273 -19.26796 -18.37688 -17.36763 -17.01110 -16.64396 -16.43441 -16.28261 -15.99370 -15.36894 -15.13551 -14.73389 -14.50024 -14.21467 -14.05984 -13.84940 -13.41926 -13.22507 -13.16339 -13.02417 -12.82743 -12.50618 -12.46772 -12.02592 -11.77593 -11.57681 -11.00909 -10.92186 -10.85964 -10.61469 -10.40452 -10.28500 -10.18179 -10.10818 -9.99078 -9.91547 -9.80064 -9.63579 -8.64812 -8.53366 -8.39187 -6.80904 -5.81340 -3.18137 0.16722 0.58151 1.58330 2.28902 2.35538 2.73614 2.88781 3.36100 3.41738 3.43538 3.53785 3.96352 4.12039 4.28172 4.45200 4.55302 4.61408 4.68944 4.73283 4.88438 5.06581 5.22604 5.25501 5.33133 5.36924 5.42382 5.46045 5.48097 5.58431 5.60346 5.63451 5.66308 5.77075 5.82249 6.07797 6.11268 6.18558 6.26917 6.43804 6.46070 6.64795 6.71160 6.85822 7.33781 7.38218 7.45692 7.55513 7.71133 8.05550 8.21001 9.12518 9.73769 10.42810 11.32021 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.002055 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.218941 B =13620.436019 C =14155.210689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.588 5.588 3 C 0.554 3.446 4 O -0.528 6.528 5 C -0.073 4.073 6 C -0.156 4.156 7 C 0.106 3.894 8 N -0.458 5.458 9 C 0.195 3.805 10 C 0.017 3.983 11 C -0.151 4.151 12 C -0.221 4.221 13 C -0.022 4.022 14 O -0.167 6.167 15 C -0.099 4.099 16 C 0.126 3.874 17 H 0.107 0.893 18 C -0.155 4.155 19 C 0.176 3.824 20 N -0.599 5.599 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.003 4.003 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.130 3.870 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.208 0.792 38 H 0.150 0.850 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 25.535 4.861 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.320 5.320 3 C 0.341 3.659 4 O -0.405 6.405 5 C -0.084 4.084 6 C -0.176 4.176 7 C -0.052 4.052 8 N -0.169 5.169 9 C 0.059 3.941 10 C -0.033 4.033 11 C -0.172 4.172 12 C -0.240 4.240 13 C -0.091 4.091 14 O -0.062 6.062 15 C -0.120 4.120 16 C 0.024 3.976 17 H 0.125 0.875 18 C -0.194 4.194 19 C 0.051 3.949 20 N -0.326 5.326 21 C -0.362 4.362 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.561 5.561 25 Si 0.742 3.258 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.182 0.818 34 H 0.188 0.812 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.225 0.775 38 H 0.167 0.833 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.077 25.786 4.893 26.733 hybrid contribution 0.089 -1.408 -0.553 1.515 sum -4.988 24.378 4.339 25.259 Atomic orbital electron populations 1.22502 0.79967 1.04159 1.02106 1.47744 1.07077 1.05784 1.71349 1.18159 0.87056 0.83208 0.77458 1.90797 1.13272 1.86868 1.49581 1.20326 0.94568 0.94631 0.98856 1.23256 0.94207 1.00590 0.99565 1.22712 1.00152 0.87186 0.95130 1.67292 1.09054 1.31986 1.08544 1.18114 0.90101 0.89306 0.96549 1.19656 0.84332 0.94721 1.04640 1.21895 1.01490 0.91710 1.02068 1.21864 0.94389 1.01752 1.05966 1.24264 1.01252 0.81649 1.01891 1.84058 1.30463 1.32332 1.59360 1.22203 1.01286 0.91161 0.97352 1.22324 0.97226 0.80783 0.97298 0.87528 1.23404 1.00721 0.98733 0.96536 1.21337 0.99216 0.90223 0.84134 1.44371 1.81584 1.00882 1.05731 1.18966 1.31619 0.83996 1.01609 0.90798 1.24966 0.99108 0.97718 0.98242 1.69931 1.41355 1.20501 1.24263 0.86116 0.78306 0.82325 0.79069 1.21480 1.21591 1.20509 1.21534 0.97958 0.86471 0.93763 0.91575 0.89771 0.89900 0.81796 0.81233 0.82466 0.82914 0.77506 0.83267 0.91745 0.91548 0.91870 0.94660 0.93558 0.95519 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 7.69 59.85 0.46 1.06 16 2 N -0.59 -8.66 2.88 -172.83 -0.50 -9.15 16 3 C 0.55 8.53 7.51 -12.19 -0.09 8.44 16 4 O -0.53 -10.03 16.15 5.35 0.09 -9.95 16 5 C -0.07 -0.90 5.55 -104.69 -0.58 -1.48 16 6 C -0.16 -1.44 7.60 -38.94 -0.30 -1.74 16 7 C 0.11 0.90 11.16 -17.63 -0.20 0.70 16 8 N -0.46 -4.95 10.02 -9.92 -0.10 -5.05 16 9 C 0.19 2.31 6.74 -83.08 -0.56 1.74 16 10 C 0.02 0.19 7.03 -36.53 -0.26 -0.07 16 11 C -0.15 -1.46 10.58 -39.40 -0.42 -1.88 16 12 C -0.22 -1.69 10.89 -39.82 -0.43 -2.13 16 13 C -0.02 -0.16 12.08 29.52 0.36 0.19 16 14 O -0.17 -1.80 10.39 4.73 0.05 -1.75 16 15 C -0.10 -1.24 9.34 -38.61 -0.36 -1.60 16 16 C 0.13 2.28 3.36 -66.09 -0.22 2.05 16 17 H 0.11 2.10 7.00 -51.93 -0.36 1.74 16 18 C -0.15 -2.80 6.61 -24.58 -0.16 -2.96 16 19 C 0.18 4.13 5.36 -2.53 -0.01 4.12 16 20 N -0.60 -14.98 3.39 -170.07 -0.58 -15.55 16 21 C -0.23 -6.39 10.21 -15.06 -0.15 -6.54 16 22 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 23 C 0.00 -0.08 5.41 -17.43 -0.09 -0.17 16 24 N -0.91 -26.48 10.88 55.49 0.60 -25.88 16 25 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.13 2.69 6.88 -3.06 -0.02 2.67 16 30 H 0.07 0.63 7.03 -51.93 -0.37 0.26 16 31 H 0.08 0.97 6.07 -51.93 -0.32 0.66 16 32 H 0.08 0.70 4.87 -51.93 -0.25 0.45 16 33 H 0.16 1.18 4.53 -52.49 -0.24 0.95 16 34 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.15 1.91 7.82 -52.49 -0.41 1.50 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.10 6.09 -51.93 -0.32 0.79 16 41 H 0.06 1.62 7.34 -51.93 -0.38 1.24 16 42 H 0.04 0.91 7.92 -51.93 -0.41 0.50 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.03 0.52 6.92 -51.93 -0.36 0.16 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -33.91 368.84 -8.44 -42.35 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.50 Total: 0.37 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.04 Total: 2.41 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.57 Total: -55.64 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.14 Total: -11.70 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.91 -8.44 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033177290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.080 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds