Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34768 * 120.00312 * 2 1 4 4 O 1.21639 * 120.00133 * 184.40654 * 3 2 1 5 5 C 1.47134 * 120.00325 * 4.41190 * 3 2 1 6 6 C 1.37944 * 120.55035 * 310.18365 * 5 3 2 7 7 N 1.33956 * 122.20642 * 180.02562 * 6 5 3 8 8 H 0.97001 * 118.59374 * 179.97438 * 7 6 5 9 9 C 1.37791 * 122.80723 * 359.97438 * 7 6 5 10 10 C 1.39279 * 120.53393 * 180.02562 * 9 7 6 11 11 C 1.37732 * 119.97540 * 180.02562 * 10 9 7 12 12 C 1.38788 * 120.72827 * 359.95505 * 11 10 9 13 13 C 1.37718 * 120.29130 * 0.04739 * 12 11 10 14 14 C 1.39495 * 119.60470 * 359.97312 * 13 12 11 15 15 C 1.47144 * 120.55912 * 129.94996 * 5 3 2 16 16 O 1.21863 * 121.40776 * 359.97438 * 15 5 3 17 17 C 1.46505 * 119.99642 * 180.02562 * 2 1 3 18 18 H 1.09000 * 110.88186 * 183.87992 * 17 2 1 19 19 C 1.55157 * 111.00773 * 59.99998 * 17 2 1 20 20 C 1.54323 * 102.94265 * 277.42827 * 19 17 2 21 21 N 1.47028 * 107.26954 * 337.80709 * 20 19 17 22 22 C 1.36934 * 125.64477 * 178.98741 * 21 20 19 23 23 H 1.08001 * 119.99661 * 174.92181 * 22 21 20 24 24 C 1.38806 * 120.00329 * 354.91768 * 22 21 20 25 25 N 1.31619 * 120.00091 * 5.96215 * 24 22 21 26 26 Si 1.86799 * 120.00174 * 185.96151 * 24 22 21 27 27 H 1.48499 * 109.47325 * 94.99279 * 26 24 22 28 28 H 1.48499 * 109.47397 * 214.99769 * 26 24 22 29 29 H 1.48506 * 109.47013 * 334.99482 * 26 24 22 30 30 C 1.47425 * 108.70018 * 358.93885 * 21 20 19 31 31 H 1.09004 * 109.47111 * 94.94454 * 1 2 3 32 32 H 1.08997 * 109.47321 * 214.94814 * 1 2 3 33 33 H 1.08992 * 109.46845 * 334.95109 * 1 2 3 34 34 H 1.08007 * 118.89729 * 0.04192 * 6 5 3 35 35 H 1.07997 * 120.00851 * 0.02562 * 10 9 7 36 36 H 1.07998 * 119.63533 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.85754 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.19434 * 179.97438 * 13 12 11 39 39 H 1.09002 * 110.71747 * 35.78814 * 19 17 2 40 40 H 1.08998 * 110.72398 * 159.06364 * 19 17 2 41 41 H 1.09004 * 109.88212 * 97.22289 * 20 19 17 42 42 H 1.08999 * 109.88440 * 218.23554 * 20 19 17 43 43 H 0.97002 * 120.00184 * 179.97438 * 25 24 22 44 44 H 1.08999 * 110.36526 * 265.28647 * 30 21 20 45 45 H 1.09009 * 110.35981 * 142.97021 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3526 1.1686 -0.0809 5 6 1.4066 2.4395 0.0980 6 6 0.3344 2.6970 -0.7307 7 7 -0.3553 3.8438 -0.6703 8 1 -1.1003 3.9701 -1.2785 9 6 -0.0516 4.8518 0.2187 10 6 -0.8012 6.0254 0.2410 11 6 -0.4872 7.0257 1.1341 12 6 0.5721 6.8796 2.0189 13 6 1.3270 5.7278 2.0146 14 6 1.0206 4.7065 1.1151 15 6 1.8026 3.4564 1.0850 16 8 2.7396 3.2750 1.8428 17 6 2.1974 -1.2688 -0.0006 18 1 3.2717 -1.0973 0.0684 19 6 1.8483 -2.1121 -1.2553 20 6 0.5310 -2.8061 -0.8497 21 7 0.4792 -2.8197 0.6196 22 6 -0.5405 -3.3306 1.3774 23 1 -0.4480 -3.3672 2.4528 24 6 -1.6930 -3.8013 0.7635 25 7 -1.7600 -3.8659 -0.5494 26 14 -3.1491 -4.3430 1.8007 27 1 -4.1068 -3.2162 1.9364 28 1 -3.8250 -5.4907 1.1440 29 1 -2.6732 -4.7528 3.1464 30 6 1.7074 -2.1933 1.1416 31 1 -0.3633 -0.0886 -1.0239 32 1 -0.3634 -0.8423 0.5887 33 1 -0.3633 0.9310 0.4351 34 1 0.0408 1.9488 -1.4522 35 1 -1.6284 6.1509 -0.4419 36 1 -1.0719 7.9336 1.1464 37 1 0.8057 7.6729 2.7136 38 1 2.1512 5.6159 2.7034 39 1 1.6943 -1.4687 -2.1217 40 1 2.6269 -2.8485 -1.4540 41 1 -0.3185 -2.2494 -1.2455 42 1 0.5163 -3.8265 -1.2329 43 1 -2.5652 -4.1952 -0.9784 44 1 2.4567 -2.9536 1.3623 45 1 1.4849 -1.6084 2.0342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033228478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = 21.002560 kcal Electronic energy + Delta-G solvation = -29924.631577 eV Core-core repulsion = 25908.629972 eV Total energy + Delta-G solvation = -4016.001605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30409 -39.60404 -38.06340 -37.60712 -37.00639 -34.20923 -32.57843 -31.86418 -30.97474 -30.15188 -29.21809 -27.75889 -26.07263 -24.77148 -24.29184 -23.92454 -22.53421 -21.31126 -20.06594 -19.19299 -18.70260 -18.14653 -17.82925 -16.93217 -16.47868 -15.98091 -15.58619 -15.27855 -15.08171 -14.78598 -14.65701 -14.37425 -14.23972 -13.90720 -13.77795 -13.43018 -13.34264 -12.81299 -12.56403 -12.41465 -12.27131 -11.98366 -11.92594 -11.66502 -11.65465 -11.47181 -10.95160 -10.93343 -10.70543 -10.25434 -10.14838 -9.93492 -9.82044 -9.67850 -9.53866 -9.37467 -9.20569 -8.68871 -8.13276 -7.93833 -6.82640 -5.78201 -3.11090 0.48994 0.57315 1.44661 2.46544 2.67110 3.10318 3.34711 3.42087 3.43249 3.46416 3.79504 4.05348 4.24946 4.44931 4.45332 4.51723 4.74470 4.80136 4.92258 5.20253 5.31177 5.41154 5.43510 5.48424 5.54301 5.62141 5.63953 5.68853 5.76454 5.93457 6.01069 6.03394 6.17621 6.26045 6.27500 6.39772 6.56263 6.57098 6.60307 6.67494 6.68844 6.81083 7.16889 7.52553 7.58152 7.77851 7.82649 7.92306 8.18996 8.63634 9.16385 9.75803 10.42463 11.32908 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.003206 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.387942 B = 8730.358022 C = 9723.937181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.587 5.587 3 C 0.580 3.420 4 O -0.537 6.537 5 C -0.315 4.315 6 C 0.203 3.797 7 N -0.599 5.599 8 H 0.422 0.578 9 C 0.185 3.815 10 C -0.171 4.171 11 C -0.061 4.061 12 C -0.157 4.157 13 C -0.030 4.030 14 C -0.184 4.184 15 C 0.436 3.564 16 O -0.465 6.465 17 C 0.126 3.874 18 H 0.100 0.900 19 C -0.155 4.155 20 C 0.175 3.825 21 N -0.603 5.603 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.919 5.919 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.124 3.876 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.173 0.827 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 21.349 -2.701 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.318 5.318 3 C 0.367 3.633 4 O -0.414 6.414 5 C -0.327 4.327 6 C 0.072 3.928 7 N -0.206 5.206 8 H 0.258 0.742 9 C 0.084 3.916 10 C -0.191 4.191 11 C -0.079 4.079 12 C -0.176 4.176 13 C -0.049 4.049 14 C -0.188 4.188 15 C 0.318 3.682 16 O -0.344 6.344 17 C 0.022 3.978 18 H 0.118 0.882 19 C -0.194 4.194 20 C 0.050 3.950 21 N -0.330 5.330 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.566 5.566 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.003 4.003 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.190 0.810 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.401 21.117 -2.328 21.249 hybrid contribution -1.453 -0.381 0.052 1.503 sum -1.854 20.735 -2.276 20.942 Atomic orbital electron populations 1.22310 0.79054 1.04586 1.02328 1.47605 1.07348 1.04939 1.71955 1.17422 0.86710 0.82491 0.76633 1.90753 1.13574 1.87046 1.50057 1.21837 1.03297 1.00171 1.07372 1.22097 0.88558 0.86558 0.95615 1.40822 1.31566 1.13849 1.34401 0.74167 1.17916 0.94642 0.88643 0.90407 1.20703 1.02023 0.92967 1.03420 1.21101 0.95808 0.97901 0.93139 1.21149 0.97012 0.98421 1.01019 1.21171 0.97655 0.91062 0.94991 1.20262 0.99082 0.98773 1.00650 1.19341 0.82692 0.84237 0.81909 1.90719 1.25982 1.79089 1.38573 1.22221 0.96275 0.82293 0.97000 0.88210 1.23248 1.00844 0.98673 0.96671 1.21227 0.91606 0.98328 0.83835 1.44603 1.17602 1.68939 1.01828 1.19061 0.92587 1.33938 0.90051 0.90453 1.24776 0.98077 1.01513 0.95791 1.69983 1.27625 1.52058 1.06972 0.86153 0.82877 0.77830 0.79269 1.21682 1.21820 1.20660 1.21916 0.90055 0.93463 0.94862 0.93180 0.86261 0.92764 0.81017 0.84822 0.85023 0.85074 0.84182 0.92001 0.91413 0.93011 0.94296 0.93812 0.95062 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 7.33 59.85 0.44 1.44 16 2 N -0.59 -10.64 2.91 -172.86 -0.50 -11.14 16 3 C 0.58 10.96 7.03 -12.65 -0.09 10.87 16 4 O -0.54 -12.08 16.21 4.33 0.07 -12.01 16 5 C -0.31 -4.89 5.04 -102.78 -0.52 -5.41 16 6 C 0.20 2.11 8.69 -16.73 -0.15 1.97 16 7 N -0.60 -4.51 5.21 -10.42 -0.05 -4.56 16 8 H 0.42 1.45 8.73 -40.82 -0.36 1.10 16 9 C 0.19 1.73 6.66 -83.94 -0.56 1.17 16 10 C -0.17 -1.13 9.87 -39.38 -0.39 -1.51 16 11 C -0.06 -0.38 10.01 -39.56 -0.40 -0.78 16 12 C -0.16 -1.21 10.03 -39.57 -0.40 -1.60 16 13 C -0.03 -0.33 9.65 -39.30 -0.38 -0.71 16 14 C -0.18 -2.31 5.89 -104.81 -0.62 -2.93 16 15 C 0.44 7.28 7.13 -32.21 -0.23 7.05 16 16 O -0.47 -9.52 16.78 4.13 0.07 -9.45 16 17 C 0.13 2.42 3.66 -65.78 -0.24 2.18 16 18 H 0.10 1.95 7.04 -51.93 -0.37 1.58 16 19 C -0.16 -2.90 6.48 -24.90 -0.16 -3.06 16 20 C 0.17 3.96 4.37 -3.06 -0.01 3.95 16 21 N -0.60 -14.44 1.89 -170.07 -0.32 -14.76 16 22 C -0.23 -6.00 9.79 -15.06 -0.15 -6.15 16 23 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 24 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 25 N -0.92 -25.22 10.35 55.49 0.57 -24.65 16 26 Si 0.91 21.14 29.56 -169.99 -5.02 16.12 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 30 C 0.12 2.61 6.36 -2.53 -0.02 2.59 16 31 H 0.05 0.76 7.18 -51.93 -0.37 0.39 16 32 H 0.12 2.48 5.08 -51.93 -0.26 2.22 16 33 H 0.05 0.78 5.57 -51.93 -0.29 0.49 16 34 H 0.17 1.41 6.64 -52.48 -0.35 1.06 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.14 1.52 7.79 -52.49 -0.41 1.11 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.25 6.12 -51.93 -0.32 0.93 16 42 H 0.04 1.00 7.63 -51.93 -0.40 0.60 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -35.67 362.33 -9.31 -44.98 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.62 Total: 1.20 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -3.95 Total: 8.82 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.30 Total: -55.11 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.14 Total: -21.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.67 -9.31 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033228478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds