Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99963 * 2 1 4 4 O 1.21583 * 120.00626 * 174.48347 * 3 2 1 5 5 C 1.47540 * 120.00003 * 354.75258 * 3 2 1 6 6 C 1.36612 * 126.82872 * 173.75252 * 5 3 2 7 7 C 1.42190 * 103.79074 * 180.02562 * 6 5 3 8 8 C 1.48456 * 126.84371 * 179.97438 * 7 6 5 9 9 C 1.39316 * 120.11899 * 359.72710 * 8 7 6 10 10 C 1.38017 * 119.87804 * 179.72350 * 9 8 7 11 11 C 1.38320 * 120.12205 * 0.54756 * 10 9 8 12 12 C 1.38314 * 120.23660 * 359.72660 * 11 10 9 13 13 C 1.38027 * 120.11994 * 359.97438 * 12 11 10 14 14 N 1.30935 * 106.31740 * 359.97438 * 7 6 5 15 15 O 1.20877 * 111.79921 * 359.70124 * 14 7 6 16 16 C 1.46499 * 120.00305 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.88569 * 176.11992 * 16 2 1 18 18 C 1.55160 * 110.99928 * 299.99968 * 16 2 1 19 19 C 1.54324 * 102.93786 * 153.57750 * 18 16 2 20 20 N 1.47026 * 107.27273 * 337.80553 * 19 18 16 21 21 C 1.36935 * 125.64692 * 178.92217 * 20 19 18 22 22 H 1.08004 * 119.99546 * 174.84325 * 21 20 19 23 23 C 1.38810 * 120.00233 * 354.84719 * 21 20 19 24 24 N 1.31613 * 120.00194 * 7.16057 * 23 21 20 25 25 Si 1.86804 * 120.00008 * 187.16076 * 23 21 20 26 26 H 1.48506 * 109.46784 * 94.97957 * 25 23 21 27 27 H 1.48500 * 109.47315 * 214.97952 * 25 23 21 28 28 H 1.48502 * 109.47096 * 334.97951 * 25 23 21 29 29 C 1.47423 * 108.69986 * 358.94075 * 20 19 18 30 30 H 1.09002 * 109.46778 * 85.38441 * 1 2 3 31 31 H 1.08999 * 109.47071 * 205.38340 * 1 2 3 32 32 H 1.09002 * 109.47451 * 325.38469 * 1 2 3 33 33 H 1.07999 * 128.10672 * 359.97438 * 6 5 3 34 34 H 1.08009 * 120.05681 * 359.97422 * 9 8 7 35 35 H 1.08008 * 119.93761 * 180.25304 * 10 9 8 36 36 H 1.08002 * 119.88175 * 179.74499 * 11 10 9 37 37 H 1.08004 * 119.94419 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.05976 * 180.02562 * 13 12 11 39 39 H 1.08995 * 110.71980 * 271.93380 * 18 16 2 40 40 H 1.08995 * 110.72385 * 35.03823 * 18 16 2 41 41 H 1.09004 * 109.88820 * 97.22600 * 19 18 16 42 42 H 1.09005 * 109.88209 * 218.23715 * 19 18 16 43 43 H 0.97001 * 120.00092 * 179.97438 * 24 23 21 44 44 H 1.09002 * 110.36487 * 265.28768 * 29 20 19 45 45 H 1.09001 * 110.36015 * 142.96765 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 0.1012 5 6 1.4058 2.4423 -0.1169 6 6 1.9289 3.7000 -0.0135 7 6 0.8054 4.5509 -0.2021 8 6 0.8008 6.0354 -0.1885 9 6 1.9845 6.7362 0.0317 10 6 1.9755 8.1163 0.0377 11 6 0.7921 8.8036 -0.1631 12 6 -0.3870 8.1128 -0.3765 13 6 -0.3883 6.7326 -0.3906 14 7 -0.2243 3.7644 -0.3903 15 8 0.0893 2.5976 -0.3526 16 6 2.1976 -1.2687 0.0006 17 1 3.2717 -1.0972 -0.0684 18 6 1.8484 -2.1118 1.2554 19 6 2.1065 -3.5580 0.7828 20 7 2.0266 -3.5583 -0.6853 21 6 2.2174 -4.6463 -1.4947 22 1 2.0552 -4.5624 -2.5592 23 6 2.6192 -5.8568 -0.9471 24 7 2.6807 -5.9998 0.3598 25 14 3.0725 -7.2831 -2.0651 26 1 4.5421 -7.2965 -2.2789 27 1 2.6525 -8.5599 -1.4338 28 1 2.3836 -7.1265 -3.3713 29 6 1.7075 -2.1933 -1.1416 30 1 -0.3633 0.0827 -1.0244 31 1 -0.3633 -0.9284 0.4405 32 1 -0.3634 0.8458 0.5838 33 1 2.9552 3.9821 0.1695 34 1 2.9083 6.2004 0.1933 35 1 2.8935 8.6606 0.2042 36 1 0.7888 9.8836 -0.1536 37 1 -1.3083 8.6543 -0.5332 38 1 -1.3095 6.1942 -0.5577 39 1 2.5043 -1.8552 2.0872 40 1 0.8035 -1.9748 1.5336 41 1 3.0982 -3.8805 1.1001 42 1 1.3499 -4.2242 1.1976 43 1 2.9611 -6.8459 0.7425 44 1 0.6326 -2.0827 -1.2845 45 1 2.2392 -1.9685 -2.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033228670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 94.938789 kcal Electronic energy + Delta-G solvation = -28439.000243 eV Core-core repulsion = 24426.204754 eV Total energy + Delta-G solvation = -4012.795490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.23750 -39.96814 -39.51563 -37.49064 -35.23288 -34.62126 -32.64035 -31.91716 -31.33691 -30.70410 -29.26961 -27.68880 -26.90884 -24.95909 -24.52146 -23.95387 -22.68340 -22.25802 -20.46235 -20.17643 -19.42717 -18.18711 -17.99317 -17.03588 -16.97045 -16.71904 -16.26129 -15.58172 -15.12045 -15.03243 -14.68012 -14.27489 -14.23077 -14.00287 -13.79424 -13.66961 -13.44856 -13.16432 -12.87046 -12.50176 -12.36681 -12.09895 -12.05091 -11.79421 -11.75313 -11.40492 -11.19507 -10.98700 -10.93432 -10.82681 -10.47067 -10.18054 -10.07405 -10.01905 -9.87393 -9.75570 -9.40393 -8.95151 -8.64646 -8.53065 -6.88519 -5.76095 -3.09212 0.37816 0.69494 0.95275 2.04514 2.38451 2.87191 3.01450 3.39665 3.44004 3.45098 3.46712 3.53404 3.99471 4.47884 4.49587 4.51594 4.61778 4.64042 4.76003 4.90112 5.01399 5.14463 5.18677 5.25314 5.34927 5.39796 5.51871 5.54791 5.56301 5.58256 5.66870 5.68415 5.85803 5.99477 6.04704 6.05569 6.09060 6.20903 6.44284 6.47445 6.48452 6.58730 6.80022 7.27518 7.49946 7.57497 7.71278 7.78479 7.94498 8.20780 9.17154 9.77261 10.41940 11.35847 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.036698 B = 0.001895 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.798141 B =14773.857607 C =14914.195036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.583 5.583 3 C 0.598 3.402 4 O -0.513 6.513 5 C -0.067 4.067 6 C -0.147 4.147 7 C 0.051 3.949 8 C -0.021 4.021 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.120 4.120 13 C -0.091 4.091 14 N -0.342 5.342 15 O 0.127 5.873 16 C 0.122 3.878 17 H 0.110 0.890 18 C -0.153 4.153 19 C 0.178 3.822 20 N -0.602 5.602 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.185 0.815 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 27.670 1.432 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.314 5.314 3 C 0.383 3.617 4 O -0.389 6.389 5 C -0.132 4.132 6 C -0.169 4.169 7 C -0.105 4.105 8 C -0.022 4.022 9 C -0.113 4.113 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.138 4.138 13 C -0.110 4.110 14 N -0.041 5.041 15 O 0.052 5.948 16 C 0.019 3.981 17 H 0.128 0.872 18 C -0.192 4.192 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.359 4.359 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.742 3.258 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.202 0.798 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.210 27.593 1.286 28.312 hybrid contribution 0.892 -0.712 -0.384 1.204 sum -5.317 26.881 0.902 27.417 Atomic orbital electron populations 1.22000 0.78740 1.03780 1.02809 1.47771 1.07656 1.05633 1.70354 1.16618 0.86046 0.80933 0.78134 1.90872 1.12097 1.85558 1.50419 1.24255 0.84351 0.97414 1.07191 1.22845 1.01425 0.89705 1.02949 1.21941 0.89238 0.95167 1.04119 1.17677 0.94655 0.86953 1.02925 1.21180 0.97134 0.94431 0.98542 1.21108 0.98548 0.93767 1.00263 1.21315 0.92674 1.00246 0.98589 1.21131 0.98589 0.93817 1.00295 1.21244 0.97419 0.94378 0.97995 1.73975 1.23432 0.89552 1.17142 1.85123 1.23653 1.20870 1.65117 1.22640 0.97365 0.80240 0.97878 0.87170 1.23267 1.00765 0.98583 0.96555 1.21171 1.01193 0.88839 0.83501 1.44372 1.83380 1.02929 1.02204 1.19048 1.39247 0.87494 0.90111 0.90288 1.24833 1.01422 0.97935 0.96008 1.69962 1.52933 1.24852 1.08834 0.86106 0.78409 0.81778 0.79511 1.21544 1.21746 1.20596 1.21759 0.97356 0.85860 0.94612 0.91567 0.89306 0.90946 0.79796 0.85224 0.85290 0.85642 0.85451 0.85271 0.91650 0.91885 0.93044 0.93674 0.93647 0.95751 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 7.97 59.85 0.48 1.29 16 2 N -0.58 -8.61 2.91 -172.71 -0.50 -9.11 16 3 C 0.60 8.98 7.66 -12.47 -0.10 8.89 16 4 O -0.51 -9.13 16.32 5.29 0.09 -9.05 16 5 C -0.07 -0.84 6.80 -36.38 -0.25 -1.09 16 6 C -0.15 -1.65 10.31 -38.65 -0.40 -2.05 16 7 C 0.05 0.57 7.05 -82.52 -0.58 -0.01 16 8 C -0.02 -0.21 5.88 -104.89 -0.62 -0.82 16 9 C -0.09 -0.74 9.60 -39.26 -0.38 -1.12 16 10 C -0.12 -0.77 10.03 -39.63 -0.40 -1.17 16 11 C -0.11 -0.68 10.04 -39.52 -0.40 -1.08 16 12 C -0.12 -0.83 10.03 -39.63 -0.40 -1.23 16 13 C -0.09 -0.81 9.70 -39.26 -0.38 -1.19 16 14 N -0.34 -4.20 11.78 33.39 0.39 -3.81 16 15 O 0.13 1.54 8.22 15.55 0.13 1.67 16 16 C 0.12 2.16 3.43 -65.78 -0.23 1.94 16 17 H 0.11 2.15 7.04 -51.93 -0.37 1.78 16 18 C -0.15 -2.77 6.50 -24.89 -0.16 -2.93 16 19 C 0.18 4.19 5.38 -3.06 -0.02 4.18 16 20 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 21 C -0.23 -6.34 10.26 -15.06 -0.15 -6.50 16 22 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 24 N -0.92 -26.58 10.36 55.49 0.57 -26.01 16 25 Si 0.91 21.89 29.56 -169.99 -5.02 16.87 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 C 0.13 2.65 6.79 -2.53 -0.02 2.63 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.05 6.38 -51.93 -0.33 0.72 16 32 H 0.07 0.75 5.96 -51.93 -0.31 0.44 16 33 H 0.18 1.69 7.57 -52.49 -0.40 1.29 16 34 H 0.13 0.83 7.22 -52.48 -0.38 0.45 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 38 H 0.13 1.12 7.89 -52.49 -0.41 0.71 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.03 6.45 -51.93 -0.34 0.69 16 41 H 0.05 1.35 7.30 -51.93 -0.38 0.97 16 42 H 0.05 1.16 7.61 -51.93 -0.39 0.77 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.47 6.97 -51.93 -0.36 0.11 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -31.87 371.94 -9.15 -41.03 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.75 Total: -1.10 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.08 Total: -0.49 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.11 Total: -54.53 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.21 Total: -7.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.87 -9.15 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033228670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.965 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds