Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99798 * 2 1 4 4 O 1.21578 * 119.99472 * 185.45100 * 3 2 1 5 5 C 1.47527 * 120.00033 * 5.45245 * 3 2 1 6 6 C 1.36617 * 126.82816 * 186.42597 * 5 3 2 7 7 C 1.42193 * 103.79318 * 179.90764 * 6 5 3 8 8 C 1.48449 * 126.84475 * 180.14752 * 7 6 5 9 9 C 1.39322 * 120.11571 * 359.97438 * 8 7 6 10 10 C 1.38017 * 119.87315 * 179.70314 * 9 8 7 11 11 C 1.38320 * 120.12422 * 0.58025 * 10 9 8 12 12 C 1.38316 * 120.23696 * 359.71637 * 11 10 9 13 13 C 1.38026 * 120.11975 * 359.97438 * 12 11 10 14 14 N 1.30932 * 106.31343 * 0.35119 * 7 6 5 15 15 O 1.20874 * 111.80376 * 359.77129 * 14 7 6 16 16 C 1.46491 * 120.00052 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.64267 * 178.31018 * 16 2 1 18 18 C 1.55160 * 110.72289 * 54.97589 * 16 2 1 19 19 C 1.55125 * 101.48812 * 205.97009 * 18 16 2 20 20 N 1.47424 * 104.72394 * 37.29566 * 19 18 16 21 21 C 1.36939 * 125.65256 * 155.81790 * 20 19 18 22 22 H 1.08000 * 119.99976 * 193.60508 * 21 20 19 23 23 C 1.38808 * 119.99614 * 13.60532 * 21 20 19 24 24 N 1.31617 * 120.00389 * 28.11392 * 23 21 20 25 25 Si 1.86807 * 119.99685 * 208.11859 * 23 21 20 26 26 H 1.48499 * 109.46838 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.46898 * 299.99809 * 25 23 21 28 28 H 1.48497 * 109.47233 * 60.00185 * 25 23 21 29 29 C 1.47020 * 108.70068 * 335.55279 * 20 19 18 30 30 H 1.09001 * 109.47272 * 274.76962 * 1 2 3 31 31 H 1.09000 * 109.47220 * 34.76954 * 1 2 3 32 32 H 1.09006 * 109.47313 * 154.76650 * 1 2 3 33 33 H 1.08003 * 128.10440 * 0.02562 * 6 5 3 34 34 H 1.07994 * 120.06064 * 0.02562 * 9 8 7 35 35 H 1.08006 * 119.94148 * 180.29998 * 10 9 8 36 36 H 1.08004 * 119.88411 * 179.70064 * 11 10 9 37 37 H 1.08003 * 119.94191 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.06215 * 179.97438 * 13 12 11 39 39 H 1.09003 * 111.00253 * 324.20869 * 18 16 2 40 40 H 1.08997 * 111.00335 * 88.02210 * 18 16 2 41 41 H 1.09001 * 110.49997 * 278.45391 * 19 18 16 42 42 H 1.09002 * 110.34694 * 156.05876 * 19 18 16 43 43 H 0.97004 * 119.99819 * 6.17189 * 24 23 21 44 44 H 1.08998 * 109.88533 * 120.70794 * 29 20 19 45 45 H 1.08999 * 109.88830 * 241.87105 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3505 1.1696 -0.1000 5 6 1.4062 2.4420 0.1214 6 6 1.9284 3.7000 0.0153 7 6 0.8055 4.5506 0.2091 8 6 0.7998 6.0350 0.1926 9 6 1.9831 6.7361 -0.0298 10 6 1.9710 8.1161 -0.0501 11 6 0.7893 8.8031 0.1617 12 6 -0.3871 8.1121 0.3891 13 6 -0.3875 6.7319 0.4052 14 7 -0.2217 3.7637 0.4093 15 8 0.0910 2.5970 0.3644 16 6 2.1975 -1.2686 -0.0006 17 1 3.2726 -1.0916 -0.0306 18 6 1.7507 -2.1600 -1.1894 19 6 2.0691 -3.5787 -0.6486 20 7 1.7323 -3.5173 0.7854 21 6 1.4003 -4.5867 1.5737 22 1 0.9598 -4.4244 2.5463 23 6 1.6300 -5.8792 1.1227 24 7 2.6062 -6.1157 0.2721 25 14 0.5535 -7.2830 1.7228 26 1 1.0012 -8.5527 1.0964 27 1 0.6623 -7.3937 3.1997 28 1 -0.8591 -7.0183 1.3490 29 6 1.8182 -2.1187 1.2303 30 1 -0.3634 0.0854 1.0241 31 1 -0.3634 0.8442 -0.5860 32 1 -0.3634 -0.9296 -0.4381 33 1 2.9536 3.9823 -0.1736 34 1 2.9070 6.2007 -0.1911 35 1 2.8867 8.6606 -0.2272 36 1 0.7852 9.8831 0.1497 37 1 -1.3069 8.6534 0.5543 38 1 -1.3066 6.1932 0.5832 39 1 0.6849 -2.0434 -1.3862 40 1 2.3368 -1.9429 -2.0823 41 1 3.1263 -3.8090 -0.7804 42 1 1.4522 -4.3233 -1.1516 43 1 3.2207 -5.4055 0.0294 44 1 0.8541 -1.7944 1.6220 45 1 2.5847 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033228672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 93.102111 kcal Electronic energy + Delta-G solvation = -28511.363605 eV Core-core repulsion = 24498.488471 eV Total energy + Delta-G solvation = -4012.875134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.27784 -40.08586 -39.53913 -37.69286 -35.35469 -34.69810 -32.76794 -32.00211 -31.36131 -30.72961 -29.24772 -27.90223 -26.90819 -24.81102 -24.55334 -23.99321 -22.75579 -22.29062 -20.52788 -20.31668 -19.47436 -18.25693 -18.03465 -17.60757 -17.00793 -16.81394 -16.37863 -15.63588 -15.28295 -15.07152 -14.48457 -14.44267 -14.11426 -13.93647 -13.79282 -13.69285 -13.47265 -13.33796 -13.19209 -13.02116 -12.44127 -12.18470 -12.10157 -11.81596 -11.68228 -11.43071 -11.24273 -11.16051 -10.84963 -10.73930 -10.53368 -10.33400 -10.14206 -10.06712 -10.02085 -9.56386 -9.42527 -8.97729 -8.66015 -8.44422 -7.00267 -6.12145 -3.15476 0.34789 0.64792 0.93149 2.01267 2.32360 2.80249 2.94564 3.41700 3.49688 3.49998 3.53412 3.71374 3.94844 4.44670 4.49369 4.57309 4.58622 4.61688 4.72158 4.86529 4.98436 5.07470 5.13184 5.15303 5.19293 5.31457 5.35585 5.44280 5.52587 5.53702 5.56137 5.58586 5.80360 5.88253 5.97250 6.02314 6.03234 6.05081 6.28338 6.29755 6.45273 6.52550 6.69377 6.90589 6.96729 7.19843 7.65424 7.73795 7.87596 8.45000 8.98317 9.78422 10.30931 11.20861 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.001949 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.636215 B =14363.318740 C =14820.249025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.600 3.400 4 O -0.514 6.514 5 C -0.068 4.068 6 C -0.146 4.146 7 C 0.051 3.949 8 C -0.022 4.022 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.120 4.120 13 C -0.091 4.091 14 N -0.341 5.341 15 O 0.128 5.872 16 C 0.126 3.874 17 H 0.109 0.891 18 C -0.145 4.145 19 C 0.146 3.854 20 N -0.601 5.601 21 C -0.337 4.337 22 H 0.067 0.933 23 C -0.025 4.025 24 N -0.917 5.917 25 Si 1.064 2.936 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.130 3.870 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.185 0.815 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.033 0.967 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 28.193 -2.976 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.315 5.315 3 C 0.384 3.616 4 O -0.390 6.390 5 C -0.133 4.133 6 C -0.168 4.168 7 C -0.104 4.104 8 C -0.023 4.023 9 C -0.113 4.113 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.138 4.138 13 C -0.110 4.110 14 N -0.040 5.040 15 O 0.053 5.947 16 C 0.023 3.977 17 H 0.127 0.873 18 C -0.184 4.184 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.465 4.465 22 H 0.085 0.915 23 C -0.226 4.226 24 N -0.558 5.558 25 Si 0.894 3.106 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.221 1.221 29 C 0.003 3.997 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.202 0.798 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.678 26.650 -2.882 27.400 hybrid contribution 1.030 1.766 0.201 2.054 sum -4.648 28.416 -2.681 28.918 Atomic orbital electron populations 1.22018 0.78526 1.03888 1.02954 1.47771 1.07751 1.05470 1.70493 1.16612 0.86023 0.80957 0.77965 1.90865 1.12083 1.85606 1.50483 1.24198 0.84431 0.97328 1.07385 1.22850 1.01419 0.89679 1.02853 1.21946 0.89278 0.95197 1.04013 1.17675 0.94679 0.86917 1.02993 1.21175 0.97093 0.94438 0.98578 1.21108 0.98564 0.93761 1.00251 1.21320 0.92699 1.00261 0.98507 1.21134 0.98613 0.93808 1.00257 1.21247 0.97433 0.94393 0.97943 1.73979 1.23449 0.89523 1.17021 1.85127 1.23670 1.20900 1.65030 1.22377 0.97226 0.80726 0.97324 0.87278 1.23269 1.01339 0.97174 0.96632 1.21589 0.98329 0.92665 0.85448 1.44522 1.82071 1.01574 1.04737 1.19744 1.39125 0.85517 1.02069 0.91499 1.25735 0.99329 0.97716 0.99863 1.70792 1.12947 1.35408 1.36681 0.83535 0.75663 0.76122 0.75308 1.21071 1.22031 1.22106 1.21549 0.98459 0.86134 0.93564 0.91506 0.90857 0.89157 0.79771 0.85243 0.85277 0.85618 0.85426 0.85263 0.90920 0.91254 0.95256 0.92372 0.91926 0.94932 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.14 59.85 0.49 1.32 16 2 N -0.58 -8.57 2.88 -173.07 -0.50 -9.07 16 3 C 0.60 8.88 7.66 -12.47 -0.10 8.79 16 4 O -0.51 -8.94 16.30 5.30 0.09 -8.85 16 5 C -0.07 -0.86 6.80 -36.38 -0.25 -1.10 16 6 C -0.15 -1.62 10.31 -38.65 -0.40 -2.01 16 7 C 0.05 0.57 7.05 -82.53 -0.58 -0.01 16 8 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 9 C -0.09 -0.73 9.60 -39.26 -0.38 -1.11 16 10 C -0.12 -0.76 10.03 -39.63 -0.40 -1.16 16 11 C -0.11 -0.67 10.04 -39.52 -0.40 -1.07 16 12 C -0.12 -0.83 10.03 -39.63 -0.40 -1.23 16 13 C -0.09 -0.80 9.70 -39.26 -0.38 -1.18 16 14 N -0.34 -4.20 11.78 33.39 0.39 -3.81 16 15 O 0.13 1.56 8.23 15.54 0.13 1.69 16 16 C 0.13 2.19 3.36 -66.10 -0.22 1.97 16 17 H 0.11 2.01 7.00 -51.93 -0.36 1.65 16 18 C -0.15 -2.51 6.60 -24.46 -0.16 -2.67 16 19 C 0.15 3.28 5.25 -2.41 -0.01 3.27 16 20 N -0.60 -14.94 3.32 -169.94 -0.56 -15.50 16 21 C -0.34 -9.39 10.04 -15.06 -0.15 -9.55 16 22 H 0.07 1.86 7.97 -52.49 -0.42 1.44 16 23 C -0.02 -0.70 5.08 -17.43 -0.09 -0.79 16 24 N -0.92 -27.41 12.83 55.49 0.71 -26.69 16 25 Si 1.06 25.07 30.00 -169.99 -5.10 19.97 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.13 2.67 6.88 -3.06 -0.02 2.65 16 30 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 31 H 0.07 0.76 5.99 -51.93 -0.31 0.45 16 32 H 0.09 1.11 6.12 -51.93 -0.32 0.80 16 33 H 0.19 1.66 7.57 -52.48 -0.40 1.26 16 34 H 0.13 0.81 7.22 -52.49 -0.38 0.43 16 35 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.13 1.12 7.89 -52.48 -0.41 0.71 16 39 H 0.07 1.17 6.13 -51.93 -0.32 0.85 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.71 6.85 -51.93 -0.36 0.35 16 42 H 0.06 1.43 7.77 -51.93 -0.40 1.02 16 43 H 0.27 8.04 5.95 -40.82 -0.24 7.80 16 44 H 0.03 0.65 7.05 -51.93 -0.37 0.28 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -32.76 371.15 -8.93 -41.69 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.62 Total: -0.31 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.06 Total: -4.71 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.04 Total: -55.07 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.21 Total: -7.17 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.76 -8.93 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033228672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.790 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds