Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99809 * 2 1 4 4 O 1.21639 * 120.00234 * 185.71430 * 3 2 1 5 5 C 1.47145 * 119.99875 * 5.71576 * 3 2 1 6 6 C 1.39040 * 121.10038 * 43.59444 * 5 3 2 7 7 N 1.32075 * 121.40558 * 180.02562 * 6 5 3 8 8 C 1.31827 * 123.60114 * 359.97438 * 7 6 5 9 9 O 1.35258 * 119.61024 * 179.97438 * 8 7 6 10 10 C 1.41173 * 120.77799 * 359.97438 * 8 7 6 11 11 C 1.40123 * 122.10757 * 180.02562 * 10 8 7 12 12 C 1.36360 * 119.50964 * 179.97438 * 11 10 8 13 13 C 1.39185 * 121.05098 * 0.02562 * 12 11 10 14 14 C 1.36519 * 120.89321 * 0.02562 * 13 12 11 15 15 C 1.39615 * 119.43556 * 359.75055 * 14 13 12 16 16 C 1.46495 * 120.00170 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88739 * 183.88107 * 16 2 1 18 18 C 1.55151 * 111.00694 * 59.99828 * 16 2 1 19 19 C 1.54324 * 102.94388 * 206.38937 * 18 16 2 20 20 N 1.47022 * 107.27263 * 22.18890 * 19 18 16 21 21 C 1.36928 * 125.65002 * 181.02612 * 20 19 18 22 22 H 1.08002 * 120.00585 * 172.65453 * 21 20 19 23 23 C 1.38820 * 120.00133 * 352.65020 * 21 20 19 24 24 N 1.31618 * 120.00204 * 161.98314 * 23 21 20 25 25 Si 1.86797 * 119.99601 * 341.71727 * 23 21 20 26 26 H 1.48501 * 109.47007 * 186.16066 * 25 23 21 27 27 H 1.48504 * 109.47182 * 306.15657 * 25 23 21 28 28 H 1.48490 * 109.47536 * 66.16258 * 25 23 21 29 29 C 1.47429 * 108.69909 * 1.28867 * 20 19 18 30 30 H 1.08996 * 109.47189 * 274.42291 * 1 2 3 31 31 H 1.08996 * 109.47332 * 34.42717 * 1 2 3 32 32 H 1.09000 * 109.46889 * 154.42408 * 1 2 3 33 33 H 1.07994 * 119.29374 * 359.97438 * 6 5 3 34 34 H 0.96696 * 114.00103 * 89.99329 * 9 8 7 35 35 H 1.07998 * 120.25105 * 359.97438 * 11 10 8 36 36 H 1.07994 * 119.47628 * 180.02562 * 12 11 10 37 37 H 1.07994 * 119.55344 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.27963 * 179.97438 * 14 13 12 39 39 H 1.09001 * 110.72169 * 88.02224 * 18 16 2 40 40 H 1.09000 * 110.87458 * 324.82114 * 18 16 2 41 41 H 1.09003 * 109.87714 * 262.77646 * 19 18 16 42 42 H 1.08991 * 110.01301 * 141.68661 * 19 18 16 43 43 H 0.97008 * 119.99703 * 354.67026 * 24 23 21 44 44 H 1.09003 * 110.36016 * 94.48334 * 29 20 19 45 45 H 1.08998 * 110.36654 * 216.79791 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3508 1.1700 -0.1049 5 6 1.4086 2.4383 0.1269 6 6 0.3781 2.5856 1.0487 7 7 -0.2817 3.7236 1.1673 8 6 -0.0273 4.7936 0.4406 9 8 -0.7548 5.9182 0.6293 10 6 0.9955 4.7796 -0.5324 11 6 1.2899 5.9007 -1.3197 12 6 2.2899 5.8286 -2.2439 13 6 3.0232 4.6585 -2.4184 14 6 2.7608 3.5484 -1.6683 15 6 1.7462 3.5918 -0.7103 16 6 2.1976 -1.2687 -0.0006 17 1 3.2718 -1.0972 0.0684 18 6 1.8485 -2.1119 -1.2553 19 6 2.1074 -3.5581 -0.7829 20 7 2.0281 -3.5585 0.6852 21 6 2.2187 -4.6466 1.4944 22 1 2.2564 -4.5223 2.5666 23 6 2.3634 -5.9095 0.9367 24 7 2.8898 -6.8856 1.6455 25 14 1.8041 -6.2255 -0.8174 26 1 1.9275 -7.6735 -1.1230 27 1 0.3872 -5.8069 -0.9682 28 1 2.6526 -5.4476 -1.7553 29 6 1.7031 -2.1948 1.1414 30 1 -0.3633 0.0792 1.0246 31 1 -0.3634 0.8476 -0.5810 32 1 -0.3633 -0.9270 -0.4437 33 1 0.1110 1.7515 1.6804 34 1 -0.3856 6.5190 1.2909 35 1 0.7290 6.8152 -1.1956 36 1 2.5166 6.6931 -2.8501 37 1 3.8097 4.6281 -3.1578 38 1 3.3357 2.6455 -1.8123 39 1 2.5039 -1.8548 -2.0873 40 1 0.8032 -1.9787 -1.5342 41 1 3.0992 -3.8798 -1.1006 42 1 1.3514 -4.2262 -1.1952 43 1 3.2473 -6.7052 2.5291 44 1 0.6273 -2.0878 1.2809 45 1 2.2308 -1.9689 2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033474357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = 35.793058 kcal Electronic energy + Delta-G solvation = -29429.199461 eV Core-core repulsion = 25413.839220 eV Total energy + Delta-G solvation = -4015.360241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46957 -39.94298 -38.38712 -37.75787 -37.05492 -35.11936 -32.69458 -32.21785 -31.59916 -30.24599 -29.33589 -28.19484 -27.08862 -25.07384 -24.03503 -23.90406 -22.95724 -21.24734 -20.55529 -19.59669 -19.18065 -18.23357 -17.98341 -17.51405 -17.22369 -16.54281 -16.08969 -15.53965 -15.29589 -15.09087 -14.88403 -14.40264 -14.37724 -14.05088 -13.63274 -13.61661 -13.43573 -12.95746 -12.75083 -12.63663 -12.49485 -12.37822 -12.31129 -12.21051 -12.14108 -11.71595 -11.46780 -11.10467 -11.06916 -10.60192 -10.40233 -10.22343 -10.01561 -9.65189 -9.55295 -9.41824 -9.05975 -8.77174 -8.55802 -8.38598 -7.09205 -6.33419 -3.23315 -0.33122 0.45196 1.26435 2.35381 2.66778 2.85366 3.04220 3.41019 3.48437 3.58210 3.70556 4.05209 4.09554 4.24039 4.42508 4.55037 4.61541 4.63554 4.84537 4.92997 4.95548 5.00916 5.11015 5.14027 5.20728 5.25514 5.36780 5.39260 5.48372 5.51701 5.60766 5.65674 5.80561 5.81823 5.90306 5.98999 6.04664 6.14029 6.32323 6.33250 6.38512 6.48675 6.66757 6.71167 6.94508 7.28286 7.44411 7.61240 7.99930 8.31023 9.01476 9.52936 10.18263 11.16985 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.002608 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.100296 B =10732.382016 C =11345.716397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.594 5.594 3 C 0.568 3.432 4 O -0.529 6.529 5 C -0.175 4.175 6 C 0.143 3.857 7 N -0.512 5.512 8 C 0.376 3.624 9 O -0.475 6.475 10 C -0.127 4.127 11 C -0.080 4.080 12 C -0.121 4.121 13 C -0.089 4.089 14 C -0.105 4.105 15 C 0.022 3.978 16 C 0.124 3.876 17 H 0.113 0.887 18 C -0.138 4.138 19 C 0.113 3.887 20 N -0.609 5.609 21 C -0.324 4.324 22 H 0.080 0.920 23 C -0.020 4.020 24 N -0.925 5.925 25 Si 1.066 2.934 26 H -0.301 1.301 27 H -0.298 1.298 28 H -0.284 1.284 29 C 0.131 3.869 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.407 0.593 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.028 0.972 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 29.148 -7.499 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.325 5.325 3 C 0.355 3.645 4 O -0.407 6.407 5 C -0.180 4.180 6 C -0.002 4.002 7 N -0.231 5.231 8 C 0.184 3.816 9 O -0.284 6.284 10 C -0.131 4.131 11 C -0.099 4.099 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.017 3.983 16 C 0.021 3.979 17 H 0.131 0.869 18 C -0.177 4.177 19 C -0.012 4.012 20 N -0.337 5.337 21 C -0.451 4.451 22 H 0.097 0.903 23 C -0.220 4.220 24 N -0.565 5.565 25 Si 0.899 3.101 26 H -0.229 1.229 27 H -0.227 1.227 28 H -0.212 1.212 29 C 0.004 3.996 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.186 0.814 34 H 0.267 0.733 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.765 27.593 -8.397 29.413 hybrid contribution 0.776 1.394 1.017 1.892 sum -4.989 28.988 -7.381 30.326 Atomic orbital electron populations 1.21992 0.79468 1.03726 1.02102 1.47692 1.07101 1.05606 1.72102 1.17732 0.86919 0.82883 0.76917 1.90804 1.13401 1.87017 1.49437 1.21885 1.00235 0.94727 1.01136 1.22655 0.88926 0.93827 0.94763 1.66633 1.29025 1.00299 1.27130 1.19384 0.85966 0.86814 0.89434 1.84615 1.51546 1.28958 1.63238 1.18851 0.97720 0.95572 1.00928 1.20918 0.97070 0.97296 0.94665 1.21000 0.95915 0.98425 0.98517 1.21158 0.98748 0.92552 0.98351 1.21179 0.96397 1.00250 0.94450 1.18734 0.94524 0.90597 0.94453 1.22544 0.97792 0.80923 0.96672 0.86918 1.22936 1.01598 0.95799 0.97383 1.21971 0.99357 0.93883 0.85971 1.44735 1.83480 1.04983 1.00537 1.20151 1.48864 0.85535 0.90545 0.90254 1.25801 0.99153 0.91151 1.05874 1.70896 1.38596 1.33719 1.13331 0.83926 0.75970 0.74122 0.76057 1.22917 1.22691 1.21186 1.21816 0.97450 0.85313 0.94990 0.91917 0.91354 0.89739 0.81376 0.73320 0.84407 0.85178 0.85028 0.83692 0.90884 0.91115 0.93208 0.95172 0.92776 0.95397 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 7.58 59.85 0.45 1.21 16 2 N -0.59 -8.21 2.91 -172.72 -0.50 -8.71 16 3 C 0.57 8.22 6.93 -12.64 -0.09 8.13 16 4 O -0.53 -9.22 14.69 5.24 0.08 -9.14 16 5 C -0.17 -2.15 5.05 -102.67 -0.52 -2.67 16 6 C 0.14 1.59 9.17 -17.15 -0.16 1.43 16 7 N -0.51 -5.81 10.25 -12.66 -0.13 -5.94 16 8 C 0.38 3.72 7.79 -16.44 -0.13 3.59 16 9 O -0.48 -3.45 12.80 -17.47 -0.22 -3.67 16 10 C -0.13 -1.26 5.75 -106.78 -0.61 -1.87 16 11 C -0.08 -0.59 9.58 -39.55 -0.38 -0.97 16 12 C -0.12 -0.82 9.95 -39.91 -0.40 -1.22 16 13 C -0.09 -0.72 9.96 -39.85 -0.40 -1.12 16 14 C -0.10 -1.14 9.29 -39.69 -0.37 -1.51 16 15 C 0.02 0.26 5.90 -104.77 -0.62 -0.36 16 16 C 0.12 2.09 3.45 -65.67 -0.23 1.86 16 17 H 0.11 2.09 7.05 -51.93 -0.37 1.73 16 18 C -0.14 -2.29 6.49 -24.90 -0.16 -2.46 16 19 C 0.11 2.43 4.60 -3.06 -0.01 2.42 16 20 N -0.61 -14.78 3.34 -169.93 -0.57 -15.35 16 21 C -0.32 -9.26 10.54 -15.06 -0.16 -9.42 16 22 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 23 C -0.02 -0.60 5.49 -17.43 -0.10 -0.69 16 24 N -0.92 -29.10 13.70 55.49 0.76 -28.34 16 25 Si 1.07 26.60 24.54 -169.99 -4.17 22.43 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 27 H -0.30 -7.15 6.89 56.52 0.39 -6.76 16 28 H -0.28 -6.48 5.36 56.52 0.30 -6.17 16 29 C 0.13 2.58 6.79 -2.41 -0.02 2.56 16 30 H 0.06 0.59 6.74 -51.93 -0.35 0.24 16 31 H 0.07 0.65 6.75 -51.93 -0.35 0.30 16 32 H 0.08 0.92 6.39 -51.93 -0.33 0.59 16 33 H 0.17 1.62 6.15 -52.49 -0.32 1.30 16 34 H 0.41 0.87 9.06 45.56 0.41 1.29 16 35 H 0.14 0.68 7.66 -52.49 -0.40 0.28 16 36 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.15 1.76 6.36 -52.48 -0.33 1.43 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.04 6.46 -51.93 -0.34 0.70 16 41 H 0.05 1.13 6.68 -51.93 -0.35 0.78 16 42 H 0.03 0.68 4.04 -51.93 -0.21 0.47 16 43 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 44 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -35.97 355.40 -7.96 -43.93 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.68 Total: 0.52 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.88 Total: -1.08 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.44 Total: -58.34 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.15 Total: -12.82 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.17 Total: 22.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.97 -7.96 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033474357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.722 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds