Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00003 * 2 1 4 4 O 1.21648 * 120.00285 * 183.71028 * 3 2 1 5 5 C 1.47100 * 120.00103 * 3.70386 * 3 2 1 6 6 C 1.42474 * 128.38084 * 301.97416 * 5 3 2 7 7 N 1.29880 * 106.40354 * 179.97438 * 6 5 3 8 8 O 1.20745 * 112.76346 * 0.02562 * 7 6 5 9 9 C 1.34232 * 111.94867 * 359.75467 * 8 7 6 10 10 C 1.47555 * 127.17476 * 180.26170 * 9 8 7 11 11 C 1.39706 * 120.15366 * 172.33331 * 10 9 8 12 12 C 1.37928 * 119.83565 * 179.69840 * 11 10 9 13 13 C 1.38373 * 120.15859 * 0.56976 * 12 11 10 14 14 C 1.38383 * 120.32026 * 359.72649 * 13 12 11 15 15 C 1.37924 * 120.15505 * 359.97422 * 14 13 12 16 16 C 1.46497 * 119.99983 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.63885 * 186.06542 * 16 2 1 18 18 C 1.55160 * 110.72042 * 62.92566 * 16 2 1 19 19 C 1.54903 * 101.58184 * 277.13786 * 18 16 2 20 20 N 1.47428 * 104.92994 * 322.93674 * 19 18 16 21 21 C 1.36940 * 125.64946 * 204.15541 * 20 19 18 22 22 H 1.07996 * 119.99503 * 180.02562 * 21 20 19 23 23 C 1.38815 * 119.99781 * 0.02562 * 21 20 19 24 24 N 1.31615 * 120.00033 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99702 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47376 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47185 * 120.00381 * 25 23 21 28 28 H 1.48502 * 109.47481 * 240.00319 * 25 23 21 29 29 C 1.47294 * 108.55584 * 24.15402 * 20 19 18 30 30 H 1.08992 * 109.47343 * 216.09565 * 1 2 3 31 31 H 1.08998 * 109.47036 * 336.09767 * 1 2 3 32 32 H 1.09005 * 109.46930 * 96.09405 * 1 2 3 33 33 H 1.08000 * 126.79493 * 359.94509 * 6 5 3 34 34 H 1.07997 * 120.08381 * 359.96651 * 11 10 9 35 35 H 1.08002 * 119.91699 * 180.29232 * 12 11 10 36 36 H 1.08004 * 119.83976 * 179.69804 * 13 12 11 37 37 H 1.08001 * 119.92174 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.07992 * 180.02562 * 15 14 13 39 39 H 1.08998 * 111.00338 * 159.06230 * 18 16 2 40 40 H 1.09003 * 111.03529 * 35.22831 * 18 16 2 41 41 H 1.08999 * 110.36843 * 81.82958 * 19 18 16 42 42 H 1.08998 * 110.37053 * 204.04070 * 19 18 16 43 43 H 0.97002 * 119.99602 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.85241 * 239.50235 * 29 20 19 45 45 H 1.09001 * 109.87114 * 118.35895 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3535 1.1684 -0.0682 5 6 1.4057 2.4398 0.0823 6 6 0.4002 2.9397 -0.7945 7 7 0.0452 4.0970 -0.3237 8 8 0.6475 4.3983 0.6785 9 6 1.5235 3.4485 1.0421 10 6 2.4247 3.4668 2.2104 11 6 3.1654 2.3300 2.5432 12 6 4.0105 2.3564 3.6329 13 6 4.1166 3.5013 4.4027 14 6 3.3813 4.6290 4.0827 15 6 2.5369 4.6191 2.9921 16 6 2.1975 -1.2687 0.0006 17 1 3.2680 -1.0942 0.1083 18 6 1.8999 -2.0750 -1.2913 19 6 0.5647 -2.7691 -0.9240 20 7 0.6939 -3.1095 0.5046 21 6 0.0132 -4.1056 1.1524 22 1 0.1789 -4.2759 2.2059 23 6 -0.8897 -4.8964 0.4549 24 7 -1.0911 -4.6891 -0.8291 25 14 -1.8176 -6.2556 1.3385 26 1 -1.4140 -6.2826 2.7674 27 1 -3.2776 -6.0020 1.2417 28 1 -1.4995 -7.5624 0.7091 29 6 1.6770 -2.1991 1.1163 30 1 -0.3633 -0.8303 0.6054 31 1 -0.3633 0.9395 0.4164 32 1 -0.3633 -0.1091 -1.0219 33 1 0.0106 2.4529 -1.6764 34 1 3.0799 1.4342 1.9461 35 1 4.5873 1.4798 3.8886 36 1 4.7763 3.5146 5.2578 37 1 3.4688 5.5190 4.6882 38 1 1.9639 5.5001 2.7432 39 1 2.6824 -2.8093 -1.4824 40 1 1.7729 -1.4110 -2.1464 41 1 -0.2719 -2.0875 -1.0774 42 1 0.4307 -3.6727 -1.5187 43 1 -1.7218 -5.2419 -1.3165 44 1 2.5031 -2.7738 1.5352 45 1 1.1991 -1.6090 1.8982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033537686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 102.498271 kcal Electronic energy + Delta-G solvation = -29996.435664 eV Core-core repulsion = 25983.967978 eV Total energy + Delta-G solvation = -4012.467686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.10329 -40.10946 -39.21289 -37.51275 -34.70656 -34.00306 -33.31551 -32.08864 -31.19851 -29.89944 -29.27540 -27.96684 -26.54264 -25.22214 -24.07279 -23.92463 -22.56965 -21.80045 -20.51916 -20.20815 -19.04487 -18.19354 -17.91334 -17.26116 -16.98985 -16.46567 -16.27902 -15.65070 -14.97649 -14.84549 -14.70183 -14.46669 -14.04136 -13.82078 -13.72158 -13.43096 -13.18547 -12.96076 -12.75296 -12.31131 -12.10904 -11.88340 -11.85027 -11.62773 -11.55334 -11.23171 -11.07509 -10.96451 -10.89902 -10.65091 -10.53809 -10.38179 -10.15535 -9.93450 -9.79733 -9.62668 -9.20921 -8.76069 -8.57988 -8.38683 -6.92671 -5.73094 -3.15497 0.22946 1.16072 1.67533 1.79134 2.54231 2.61965 3.16558 3.34847 3.41110 3.43072 3.57423 4.04947 4.14323 4.42317 4.56702 4.64559 4.70616 4.84560 4.91769 5.02422 5.19174 5.29738 5.31972 5.37274 5.39037 5.46240 5.59331 5.60586 5.63896 5.77791 5.78426 5.82953 6.10721 6.13190 6.19681 6.23488 6.25516 6.28219 6.45831 6.50892 6.61463 6.64328 6.87884 7.40384 7.48721 7.55352 7.77590 7.94249 8.13121 8.27587 9.13689 9.73931 10.37943 11.30254 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.003109 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.031810 B = 9004.067315 C = 9712.744794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.579 5.579 3 C 0.591 3.409 4 O -0.533 6.533 5 C -0.231 4.231 6 C 0.033 3.967 7 N -0.361 5.361 8 O 0.109 5.891 9 C 0.066 3.934 10 C -0.037 4.037 11 C -0.074 4.074 12 C -0.118 4.118 13 C -0.099 4.099 14 C -0.126 4.126 15 C -0.088 4.088 16 C 0.125 3.875 17 H 0.102 0.898 18 C -0.154 4.154 19 C 0.146 3.854 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.127 3.873 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.201 0.799 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.106 0.894 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 17.464 5.579 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.310 5.310 3 C 0.378 3.622 4 O -0.412 6.412 5 C -0.238 4.238 6 C -0.146 4.146 7 N -0.064 5.064 8 O 0.046 5.954 9 C 0.001 3.999 10 C -0.038 4.038 11 C -0.092 4.092 12 C -0.136 4.136 13 C -0.118 4.118 14 C -0.144 4.144 15 C -0.106 4.106 16 C 0.022 3.978 17 H 0.120 0.880 18 C -0.194 4.194 19 C 0.021 3.979 20 N -0.329 5.329 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.000 4.000 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.218 0.782 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.655 18.189 5.104 20.029 hybrid contribution -0.298 -1.360 0.267 1.417 sum 6.356 16.829 5.371 18.774 Atomic orbital electron populations 1.22077 0.78638 1.03324 1.03023 1.47760 1.07695 1.05141 1.70421 1.16852 0.86395 0.82055 0.76890 1.90819 1.12870 1.86983 1.50516 1.21431 1.03985 0.99031 0.99383 1.25013 0.95606 0.92097 1.01914 1.73536 1.16752 1.17137 0.98960 1.84807 1.39039 1.39096 1.32496 1.22929 0.93337 0.87617 0.96000 1.17582 0.97501 0.96046 0.92712 1.21637 0.93608 0.97725 0.96271 1.21132 0.98718 0.98792 0.94955 1.21403 0.98274 0.92984 0.99097 1.21069 0.97144 0.98821 0.97401 1.21294 0.98035 0.96936 0.94377 1.22244 0.96218 0.81590 0.97750 0.88004 1.23375 1.01948 0.98656 0.95404 1.22082 0.90077 0.99638 0.86071 1.44600 1.46480 1.35917 1.05902 1.19101 1.16219 1.06607 0.93205 0.90427 1.24772 0.99828 0.99807 0.96051 1.69801 1.38696 1.41501 1.06880 0.86014 0.79401 0.81638 0.78516 1.20536 1.21763 1.21731 1.21659 0.93233 0.91336 0.93748 0.88439 0.92146 0.91950 0.78229 0.84280 0.85027 0.85498 0.85291 0.85012 0.90889 0.92012 0.96298 0.87594 0.93747 0.94621 0.95397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 7.96 59.85 0.48 1.57 16 2 N -0.58 -9.20 2.83 -173.23 -0.49 -9.69 16 3 C 0.59 9.32 5.66 -12.66 -0.07 9.25 16 4 O -0.53 -9.54 14.69 5.24 0.08 -9.47 16 5 C -0.23 -3.25 4.78 -104.12 -0.50 -3.74 16 6 C 0.03 0.41 10.68 -16.75 -0.18 0.23 16 7 N -0.36 -4.77 11.98 30.84 0.37 -4.40 16 8 O 0.11 1.40 11.03 16.71 0.18 1.58 16 9 C 0.07 0.87 7.24 -35.23 -0.26 0.62 16 10 C -0.04 -0.46 5.87 -105.00 -0.62 -1.07 16 11 C -0.07 -0.95 9.13 -39.15 -0.36 -1.31 16 12 C -0.12 -1.23 10.03 -39.65 -0.40 -1.63 16 13 C -0.10 -0.85 10.04 -39.48 -0.40 -1.24 16 14 C -0.13 -1.05 10.03 -39.64 -0.40 -1.44 16 15 C -0.09 -0.86 9.74 -39.15 -0.38 -1.24 16 16 C 0.12 2.16 3.56 -66.10 -0.24 1.93 16 17 H 0.10 1.73 7.03 -51.93 -0.37 1.36 16 18 C -0.15 -2.82 6.64 -24.58 -0.16 -2.98 16 19 C 0.15 3.26 5.07 -2.53 -0.01 3.25 16 20 N -0.60 -14.25 2.95 -169.86 -0.50 -14.76 16 21 C -0.22 -5.87 10.28 -15.06 -0.15 -6.03 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -25.51 10.09 55.49 0.56 -24.95 16 25 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.13 2.49 6.10 -2.92 -0.02 2.47 16 30 H 0.10 1.77 5.81 -51.93 -0.30 1.47 16 31 H 0.06 0.81 5.91 -51.93 -0.31 0.51 16 32 H 0.06 0.91 7.35 -51.93 -0.38 0.53 16 33 H 0.20 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.14 2.04 4.34 -52.49 -0.23 1.82 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 1.04 7.99 -52.48 -0.42 0.62 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.44 5.73 -51.93 -0.30 0.14 16 42 H 0.11 2.75 5.86 -51.93 -0.30 2.44 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -30.06 363.14 -8.61 -38.67 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.50 Total: 2.97 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.75 Total: -1.71 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.06 Total: -53.79 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.26 Total: -7.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.06 -8.61 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033537686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.166 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds