Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99774 * 2 1 4 4 O 1.21549 * 120.00044 * 184.52494 * 3 2 1 5 5 C 1.47860 * 120.00081 * 4.52353 * 3 2 1 6 6 C 1.39682 * 120.07556 * 319.28531 * 5 3 2 7 7 C 1.38058 * 120.14868 * 180.02562 * 6 5 3 8 8 C 1.38099 * 120.30038 * 0.02562 * 7 6 5 9 9 C 1.39643 * 120.14276 * 359.97438 * 8 7 6 10 10 C 1.47857 * 120.06923 * 180.02562 * 9 8 7 11 11 C 1.35757 * 126.58513 * 0.02562 * 10 9 8 12 12 N 1.34138 * 107.51772 * 179.97438 * 11 10 9 13 13 C 1.30357 * 108.90298 * 359.97438 * 12 11 10 14 14 O 1.34000 * 109.03375 * 359.76673 * 13 12 11 15 15 C 1.39315 * 120.07690 * 139.53837 * 5 3 2 16 16 C 1.46493 * 120.00104 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.64582 * 178.31723 * 16 2 1 18 18 C 1.55150 * 110.72273 * 54.97817 * 16 2 1 19 19 C 1.54913 * 101.58249 * 277.13956 * 18 16 2 20 20 N 1.47418 * 104.83071 * 322.98587 * 19 18 16 21 21 C 1.36936 * 125.64811 * 204.09107 * 20 19 18 22 22 H 1.08000 * 119.99811 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00182 * 0.04133 * 21 20 19 24 24 N 1.31619 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00368 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46816 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47046 * 120.00108 * 25 23 21 28 28 H 1.48497 * 109.47316 * 240.00488 * 25 23 21 29 29 C 1.47023 * 108.70210 * 24.13083 * 20 19 18 30 30 H 1.09006 * 109.46624 * 90.05964 * 1 2 3 31 31 H 1.08992 * 109.46883 * 210.05704 * 1 2 3 32 32 H 1.08996 * 109.47418 * 330.06062 * 1 2 3 33 33 H 1.08003 * 119.93107 * 359.97438 * 6 5 3 34 34 H 1.08000 * 119.84734 * 179.97438 * 7 6 5 35 35 H 1.07999 * 119.92769 * 179.97438 * 8 7 6 36 36 H 1.08007 * 126.24258 * 359.96089 * 11 10 9 37 37 H 1.08003 * 125.48577 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.14651 * 0.02562 * 15 5 3 39 39 H 1.09002 * 111.00611 * 35.21045 * 18 16 2 40 40 H 1.08998 * 111.00710 * 159.06455 * 18 16 2 41 41 H 1.09006 * 110.36597 * 204.15009 * 19 18 16 42 42 H 1.08995 * 110.45895 * 81.87772 * 19 18 16 43 43 H 0.97003 * 120.00054 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.88065 * 239.51925 * 29 20 19 45 45 H 1.09005 * 109.88296 * 118.35839 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3515 1.1689 -0.0830 5 6 1.4030 2.4457 0.1010 6 6 0.2086 2.6233 -0.6011 7 6 -0.4795 3.8166 -0.5083 8 6 0.0075 4.8423 0.2777 9 6 1.2004 4.6782 0.9849 10 6 1.7200 5.7773 1.8264 11 6 1.1498 6.9958 2.0086 12 7 1.9385 7.6900 2.8424 13 6 2.9586 6.9491 3.1738 14 8 2.8500 5.7594 2.5668 15 6 1.9021 3.4779 0.8924 16 6 2.1975 -1.2686 0.0006 17 1 3.2727 -1.0917 -0.0295 18 6 1.7508 -2.1610 -1.1874 19 6 0.4719 -2.8225 -0.6158 20 7 0.7745 -3.0618 0.8070 21 6 0.1811 -4.0063 1.6012 22 1 0.4738 -4.1026 2.6364 23 6 -0.7963 -4.8403 1.0759 24 7 -1.1523 -4.7235 -0.1858 25 14 -1.6053 -6.1293 2.1591 26 1 -1.0318 -6.0569 3.5271 27 1 -3.0673 -5.8764 2.2218 28 1 -1.3602 -7.4788 1.5900 29 6 1.8182 -2.1176 1.2322 30 1 -0.3633 -0.0011 -1.0278 31 1 -0.3633 -0.8894 0.5147 32 1 -0.3634 0.8905 0.5129 33 1 -0.1773 1.8256 -1.2186 34 1 -1.4023 3.9487 -1.0535 35 1 -0.5355 5.7735 0.3456 36 1 0.2292 7.3431 1.5631 37 1 3.7599 7.2448 3.8348 38 1 2.8275 3.3475 1.4338 39 1 1.5194 -1.5568 -2.0646 40 1 2.5077 -2.9101 -1.4196 41 1 0.2726 -3.7655 -1.1250 42 1 -0.3810 -2.1512 -0.7147 43 1 -1.8351 -5.3065 -0.5531 44 1 2.6909 -2.6653 1.5880 45 1 1.4349 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033551055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 67.951525 kcal Electronic energy + Delta-G solvation = -29071.136630 eV Core-core repulsion = 25057.170885 eV Total energy + Delta-G solvation = -4013.965745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.60849 -40.53725 -38.81422 -37.35869 -35.11346 -34.64888 -33.07135 -32.06303 -31.32880 -29.41360 -28.90717 -27.96508 -26.38831 -24.81420 -23.98183 -23.87345 -22.59499 -21.65999 -20.65540 -20.19355 -19.05515 -18.21535 -17.19999 -16.99000 -16.90004 -16.72184 -16.21271 -15.67638 -15.23505 -14.84041 -14.74519 -14.36597 -14.21220 -13.96904 -13.80101 -13.52574 -13.24714 -12.90248 -12.81950 -12.34713 -12.14577 -11.89477 -11.80506 -11.74468 -11.67173 -11.48531 -11.12597 -10.95991 -10.95590 -10.87448 -10.39220 -10.21099 -10.14603 -9.92228 -9.64987 -9.56254 -9.26880 -8.71930 -8.43217 -8.35074 -6.91300 -5.72592 -3.14586 0.25406 0.79975 1.57102 2.31601 2.36258 2.77875 3.11128 3.35147 3.41647 3.43470 3.55780 3.86349 4.23509 4.40553 4.43741 4.55681 4.64475 4.71595 4.86477 5.02337 5.20219 5.31156 5.36005 5.38742 5.43051 5.47590 5.53762 5.61824 5.65877 5.75321 5.83856 5.91347 6.00541 6.02690 6.05454 6.15250 6.25402 6.30925 6.45260 6.51155 6.53315 6.65479 6.95452 7.31261 7.39216 7.56305 7.59540 7.78209 8.24689 8.28681 9.14886 9.75170 10.39180 11.31007 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.002366 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.662060 B =11829.023439 C =11966.778805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.584 5.584 3 C 0.554 3.446 4 O -0.542 6.542 5 C -0.117 4.117 6 C -0.078 4.078 7 C -0.121 4.121 8 C -0.076 4.076 9 C -0.029 4.029 10 C 0.006 3.994 11 C -0.026 4.026 12 N -0.487 5.487 13 C 0.173 3.827 14 O -0.196 6.196 15 C -0.046 4.046 16 C 0.125 3.875 17 H 0.101 0.899 18 C -0.154 4.154 19 C 0.144 3.856 20 N -0.603 5.603 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.126 3.874 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.187 0.813 37 H 0.252 0.748 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.022 0.978 43 H 0.252 0.748 44 H 0.034 0.966 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 21.140 -0.172 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.315 5.315 3 C 0.342 3.658 4 O -0.421 6.421 5 C -0.120 4.120 6 C -0.096 4.096 7 C -0.138 4.138 8 C -0.095 4.095 9 C -0.030 4.030 10 C -0.047 4.047 11 C -0.166 4.166 12 N -0.215 5.215 13 C -0.052 4.052 14 O -0.082 6.082 15 C -0.065 4.065 16 C 0.022 3.978 17 H 0.119 0.881 18 C -0.193 4.193 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.000 4.000 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.204 0.796 37 H 0.268 0.732 38 H 0.154 0.846 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.810 21.511 0.025 21.694 hybrid contribution -0.376 -1.229 0.428 1.355 sum 2.434 20.282 0.453 20.433 Atomic orbital electron populations 1.22434 0.79134 1.04716 1.01795 1.47719 1.07446 1.05342 1.70987 1.18283 0.87019 0.83511 0.76973 1.90761 1.13520 1.87214 1.50618 1.19884 0.96440 0.94944 1.00704 1.21850 0.92688 0.97962 0.97125 1.21031 1.00681 0.92648 0.99490 1.21171 0.93747 0.99559 0.94992 1.17465 0.96123 0.91045 0.98364 1.21422 0.87619 0.97237 0.98432 1.23286 1.02067 0.90707 1.00533 1.70354 1.04148 1.33044 1.13939 1.28167 0.99753 0.78706 0.98609 1.84517 1.38184 1.37430 1.48105 1.21259 0.98664 0.90581 0.95989 1.22202 0.96460 0.81825 0.97338 0.88100 1.23352 1.01616 0.98224 0.96148 1.22134 0.90473 1.00752 0.84690 1.44549 1.42707 1.37684 1.07988 1.19115 1.14746 1.08315 0.92821 0.90455 1.24770 0.99389 0.99866 0.96520 1.69800 1.34094 1.41072 1.12070 0.86008 0.78953 0.81275 0.79311 1.20558 1.21761 1.21735 1.21651 0.92888 0.91446 0.94056 0.92404 0.87771 0.91441 0.83994 0.84374 0.84924 0.79621 0.73244 0.84574 0.92000 0.90893 0.87602 0.96055 0.93758 0.94793 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 7.00 59.85 0.42 1.33 16 2 N -0.58 -9.55 2.82 -172.95 -0.49 -10.04 16 3 C 0.55 9.04 7.33 -12.32 -0.09 8.95 16 4 O -0.54 -10.46 16.31 5.32 0.09 -10.38 16 5 C -0.12 -1.54 5.18 -105.02 -0.54 -2.08 16 6 C -0.08 -0.81 7.49 -39.11 -0.29 -1.10 16 7 C -0.12 -0.98 10.02 -39.70 -0.40 -1.38 16 8 C -0.08 -0.63 9.57 -39.11 -0.37 -1.00 16 9 C -0.03 -0.31 5.87 -105.03 -0.62 -0.93 16 10 C 0.01 0.06 7.07 -36.54 -0.26 -0.19 16 11 C -0.03 -0.25 11.29 -17.43 -0.20 -0.45 16 12 N -0.49 -4.96 11.27 -14.68 -0.17 -5.13 16 13 C 0.17 1.41 13.22 52.14 0.69 2.10 16 14 O -0.20 -2.07 10.59 4.22 0.04 -2.03 16 15 C -0.05 -0.58 9.32 -38.77 -0.36 -0.94 16 16 C 0.12 2.27 3.58 -66.10 -0.24 2.03 16 17 H 0.10 1.85 7.00 -51.93 -0.36 1.48 16 18 C -0.15 -2.85 6.53 -24.58 -0.16 -3.01 16 19 C 0.14 3.23 5.00 -2.53 -0.01 3.22 16 20 N -0.60 -14.54 2.97 -170.07 -0.50 -15.05 16 21 C -0.22 -5.92 10.27 -15.06 -0.15 -6.07 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -25.58 10.09 55.49 0.56 -25.02 16 25 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.13 2.60 6.24 -3.06 -0.02 2.59 16 30 H 0.06 0.76 7.03 -51.93 -0.36 0.39 16 31 H 0.10 1.91 5.19 -51.93 -0.27 1.64 16 32 H 0.07 0.85 5.54 -51.93 -0.29 0.56 16 33 H 0.14 1.36 5.59 -52.48 -0.29 1.07 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.70 7.02 -52.49 -0.37 0.33 16 36 H 0.19 1.20 7.29 -52.48 -0.38 0.82 16 37 H 0.25 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.14 1.80 7.94 -52.48 -0.42 1.39 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.11 2.75 5.87 -51.93 -0.30 2.44 16 42 H 0.02 0.49 5.54 -51.93 -0.29 0.20 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -32.87 364.14 -8.12 -41.00 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.42 Total: 2.06 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.70 Total: 2.69 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.60 Total: -55.23 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.13 Total: -12.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.87 -8.12 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033551055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.950 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds